AT2G30520 : ROOT PHOTOTROPISM 2
Query Information
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AGICode AT2G30520
Description Phototropic-responsive NPH3 family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G30520 Phototropic-responsive NPH3 family protein ROOT PHOTOTROPISM 2 1 0.3 -0.31
2 AT2G30520 Phototropic-responsive NPH3 family protein ROOT PHOTOTROPISM 2 0.87 0.32 -0.31
3 AT3G07270 GTP cyclohydrolase I 0.82 0.31 -0.33
4 AT4G21870 HSP20-like chaperones superfamily protein 0.82 0.33 -0.31
5 AT5G11110 sucrose phosphate synthase 2F sucrose phosphate synthase 2F,
KAONASHI 2, SUCROSE PHOSPHATE
SYNTHASE 1, sucrose phosphate
synthase 2F, sucrose-phosphate
synthase A2		 -0.81 0.32 -0.31
6 AT2G04350 AMP-dependent synthetase and ligase family protein long-chain acyl-CoA synthetase 8 -0.81 0.33 -0.3
7 AT1G23480 cellulose synthase-like A3 cellulose synthase-like A3,
ATCSLA3, CSLA03, cellulose
synthase-like A3, CELLULOSE
SYNTHASE-LIKE A3		 0.8 0.31 -0.32
8 AT2G18910 hydroxyproline-rich glycoprotein family protein 0.8 0.33 -0.33
9 AT4G28570 Long-chain fatty alcohol dehydrogenase family protein -0.79 0.31 -0.34
10 AT3G02180 SPIRAL1-like3 SPIRAL1-like3 0.78 0.32 -0.32
11 AT2G42900 Plant basic secretory protein (BSP) family protein 0.78 0.33 -0.31
12 AT4G11460 cysteine-rich RLK (RECEPTOR-like protein kinase) 30 cysteine-rich RLK (RECEPTOR-like
protein kinase) 30		 0.78 0.33 -0.32
13 AT2G38465 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 11 growth stages; Has 16 Blast hits to 16 proteins
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.78 0.32 -0.32
14 AT4G17870 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 PYRABACTIN RESISTANCE 1,
regulatory component of ABA
receptor 11		 0.78 0.3 -0.32
15 AT3G27210 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
plasma membrane; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G40860.1); Has 133 Blast hits to 98 proteins in 25
species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7;
Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source:
NCBI BLink).		 -0.78 0.29 -0.32
16 AT3G04240 Tetratricopeptide repeat (TPR)-like superfamily protein secret agent -0.78 0.33 -0.31
17 AT5G44020 HAD superfamily, subfamily IIIB acid phosphatase 0.78 0.32 -0.33
18 AT1G58360 amino acid permease 1 amino acid permease 1, NEUTRAL
AMINO ACID TRANSPORTER 2		 -0.77 0.35 -0.31
19 AT3G23880 F-box and associated interaction domains-containing protein 0.77 0.33 -0.31
20 AT4G17540 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.77 0.31 -0.31
21 AT3G06070 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits
to 33 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.76 0.31 -0.32
22 AT5G37500 gated outwardly-rectifying K+ channel gated outwardly-rectifying K+
channel		 -0.76 0.29 -0.29
23 AT5G23850 Arabidopsis thaliana protein of unknown function (DUF821) -0.76 0.29 -0.31
24 AT1G62570 flavin-monooxygenase glucosinolate S-oxygenase 4 flavin-monooxygenase glucosinolate
S-oxygenase 4		 -0.76 0.32 -0.32
25 AT2G33330 plasmodesmata-located protein 3 plasmodesmata-located protein 3 0.76 0.33 -0.28
26 AT2G41600 Mitochondrial glycoprotein family protein 0.76 0.3 -0.31
27 AT5G06770 KH domain-containing protein / zinc finger (CCCH type)
family protein		 0.76 0.32 -0.29
28 AT2G32720 cytochrome B5 isoform B ARABIDOPSIS CYTOCHROME B5 ISOFORM
B, B5 #4, cytochrome B5 isoform B		 0.75 0.34 -0.33
29 AT5G67340 ARM repeat superfamily protein -0.75 0.3 -0.29
30 AT1G67300 Major facilitator superfamily protein -0.75 0.33 -0.33
31 AT1G62710 beta vacuolar processing enzyme beta vacuolar processing enzyme,
BETAVPE		 -0.75 0.33 -0.34
32 AT3G06750 hydroxyproline-rich glycoprotein family protein 0.75 0.33 -0.31
33 AT5G63670 SPT4 homolog 2 SPT4 homolog 2 0.75 0.33 -0.31
34 AT5G23670 long chain base2 long chain base2 0.75 0.32 -0.3
35 AT3G14770 Nodulin MtN3 family protein AtSWEET2, SWEET2 0.75 0.32 -0.31
36 AT2G44210 Protein of Unknown Function (DUF239) 0.75 0.32 -0.32
37 AT5G57050 Protein phosphatase 2C family protein ABA INSENSITIVE 2, AtABI2 -0.75 0.29 -0.29
38 AT5G14120 Major facilitator superfamily protein 0.74 0.31 -0.31
39 AT1G20450 Dehydrin family protein EARLY RESPONSIVE TO DEHYDRATION
10, LOW TEMPERATURE INDUCED 29,
LOW TEMPERATURE INDUCED 45		 -0.74 0.33 -0.3
40 AT1G12020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G62422.1); Has 89 Blast hits
to 88 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 0.74 0.3 -0.29
41 AT5G52190 Sugar isomerase (SIS) family protein 0.74 0.31 -0.31
42 AT1G48370 YELLOW STRIPE like 8 YELLOW STRIPE like 8 -0.73 0.3 -0.32
43 AT1G22330 RNA-binding (RRM/RBD/RNP motifs) family protein 0.73 0.31 -0.31
44 AT1G54730 Major facilitator superfamily protein 0.73 0.31 -0.32
45 AT1G72430 SAUR-like auxin-responsive protein family 0.73 0.36 -0.32
46 AT5G58700 phosphatidylinositol-speciwc phospholipase C4 ATPLC4,
phosphatidylinositol-speciwc
phospholipase C4		 -0.72 0.32 -0.32
47 AT4G35410 Clathrin adaptor complex small chain family protein 0.72 0.29 -0.3
48 AT5G20250 Raffinose synthase family protein DARK INDUCIBLE 10, raffinose
synthase 6		 0.72 0.32 -0.31
49 AT3G05880 Low temperature and salt responsive protein family RARE-COLD-INDUCIBLE 2A -0.72 0.32 -0.32
50 AT1G78610 mechanosensitive channel of small conductance-like 6 mechanosensitive channel of small
conductance-like 6		 -0.72 0.32 -0.34
51 AT1G74910 ADP-glucose pyrophosphorylase family protein 0.72 0.31 -0.33
52 AT2G18170 MAP kinase 7 MAP kinase 7, MAP kinase 7 -0.72 0.34 -0.32
53 AT1G76990 ACT domain repeat 3 ACT domain repeat 3 0.72 0.32 -0.31
54 AT2G22260 oxidoreductase, 2OG-Fe(II) oxygenase family protein 0.72 0.32 -0.31
55 AT2G02590 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Putative small
multi-drug export (InterPro:IPR009577); Has 405 Blast hits
to 405 proteins in 185 species: Archae - 65; Bacteria -
295; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0;
Other Eukaryotes - 22 (source: NCBI BLink).		 0.72 0.31 -0.29
56 AT3G26630 Tetratricopeptide repeat (TPR)-like superfamily protein 0.72 0.31 -0.3
57 AT2G15680 Calcium-binding EF-hand family protein AtCML30, calmodulin-like 30 0.72 0.31 -0.31
58 AT4G18700 CBL-interacting protein kinase 12 WPL4-LIKE 4, CBL-interacting
protein kinase 12, SNF1-RELATED
PROTEIN KINASE 3.9, WPL4-LIKE 4		 -0.71 0.3 -0.31
59 AT4G34770 SAUR-like auxin-responsive protein family 0.71 0.32 -0.32
60 AT5G05610 alfin-like 1 alfin-like 1 0.71 0.32 -0.31
61 AT1G18640 3-phosphoserine phosphatase 3-phosphoserine phosphatase 0.71 0.32 -0.31
62 AT1G12100 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.71 0.31 -0.32
63 AT2G31790 UDP-Glycosyltransferase superfamily protein 0.71 0.3 -0.31
64 AT2G21220 SAUR-like auxin-responsive protein family 0.71 0.3 -0.3
65 AT1G69530 expansin A1 AT-EXP1, ATEXP1, expansin A1,
ATHEXP ALPHA 1.2, EXPANSIN 1,
expansin A1		 0.71 0.33 -0.31
66 AT5G12270 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.71 0.31 -0.33
67 AT4G03110 RNA-binding protein-defense related 1 RNA-binding protein-defense
related 1, RNA-binding
protein-defense related 1		 0.71 0.31 -0.31
68 AT1G21670 LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller
(InterPro:IPR011659), Six-bladed beta-propeller, TolB-like
(InterPro:IPR011042); BEST Arabidopsis thaliana protein
match is: DPP6 N-terminal domain-like protein
(TAIR:AT1G21680.1); Has 8461 Blast hits to 5060 proteins in
1257 species: Archae - 79; Bacteria - 5567; Metazoa - 37;
Fungi - 70; Plants - 117; Viruses - 0; Other Eukaryotes -
2591 (source: NCBI BLink).		 -0.7 0.32 -0.3
69 AT1G33970 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.7 0.31 -0.3
70 AT5G13090 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G24270.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.7 0.32 -0.34
71 AT5G20640 Protein of unknown function (DUF567) 0.7 0.3 -0.3
72 AT2G45890 RHO guanyl-nucleotide exchange factor 4 RHO GUANYL-NUCLEOTIDE EXCHANGE
FACTOR 4, ROOT HAIR SPECIFIC 11,
RHO guanyl-nucleotide exchange
factor 4		 0.7 0.33 -0.31
73 AT3G01120 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 AtCGS1, A. thaliana cystathionine
gamma-synthetase 1, CYSTATHIONINE
GAMMA-SYNTHASE, CYSTATHIONINE
GAMMA-SYNTHASE 1, METHIONINE
OVERACCUMULATION 1		 0.7 0.33 -0.32
74 AT1G67480 Galactose oxidase/kelch repeat superfamily protein 0.7 0.32 -0.33
75 AT5G26770 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G05830.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.7 0.32 -0.32
76 AT1G14140 Mitochondrial substrate carrier family protein 0.7 0.33 -0.33
77 AT4G14100 transferases, transferring glycosyl groups 0.69 0.29 -0.32
78 AT1G73480 alpha/beta-Hydrolases superfamily protein -0.69 0.31 -0.33
79 AT3G06060 NAD(P)-binding Rossmann-fold superfamily protein TSC10A 0.69 0.3 -0.29
80 AT1G79270 evolutionarily conserved C-terminal region 8 evolutionarily conserved
C-terminal region 8		 -0.69 0.31 -0.32
81 AT3G12580 heat shock protein 70 ARABIDOPSIS HEAT SHOCK PROTEIN 70,
heat shock protein 70		 -0.69 0.3 -0.34
82 AT4G35300 tonoplast monosaccharide transporter2 tonoplast monosaccharide
transporter2		 -0.69 0.31 -0.31
83 AT4G18460 D-Tyr-tRNA(Tyr) deacylase family protein 0.69 0.32 -0.32
84 AT4G32940 gamma vacuolar processing enzyme gamma vacuolar processing enzyme,
GAMMAVPE		 -0.69 0.31 -0.32
85 AT2G23120 Late embryogenesis abundant protein, group 6 -0.69 0.31 -0.32
86 AT4G17550 Major facilitator superfamily protein glycerol-3-phosphate permease 4,
glycerol-3-phosphate permease 4		 -0.69 0.31 -0.33
87 AT5G18670 beta-amylase 3 BETA-AMYLASE 9, beta-amylase 3 0.68 0.3 -0.29
88 AT4G19390 Uncharacterised protein family (UPF0114) -0.68 0.3 -0.32
89 AT1G11210 Protein of unknown function (DUF761) -0.68 0.31 -0.31
90 AT1G49720 abscisic acid responsive element-binding factor 1 abscisic acid responsive
element-binding factor 1		 -0.68 0.33 -0.34
91 AT2G41290 strictosidine synthase-like 2 strictosidine synthase-like 2 0.68 0.32 -0.28
92 AT2G16990 Major facilitator superfamily protein -0.68 0.33 -0.31
93 AT5G64410 oligopeptide transporter 4 ARABIDOPSIS THALIANA OLIGOPEPTIDE
TRANSPORTER 4, oligopeptide
transporter 4		 0.68 0.35 -0.31
94 AT1G22330 RNA-binding (RRM/RBD/RNP motifs) family protein 0.68 0.32 -0.32
95 AT1G75370 Sec14p-like phosphatidylinositol transfer family protein -0.68 0.32 -0.31
96 AT2G46330 arabinogalactan protein 16 arabinogalactan protein 16,
ATAGP16		 0.68 0.31 -0.33
97 AT5G32450 RNA binding (RRM/RBD/RNP motifs) family protein 0.68 0.33 -0.33
98 AT1G65590 beta-hexosaminidase 3 ATHEX1, beta-hexosaminidase 3 0.68 0.31 -0.31
99 AT2G16890 UDP-Glycosyltransferase superfamily protein -0.68 0.3 -0.31
100 AT4G36010 Pathogenesis-related thaumatin superfamily protein -0.67 0.3 -0.31
101 AT4G14000 Putative methyltransferase family protein 0.67 0.3 -0.31
102 AT2G46240 BCL-2-associated athanogene 6 ARABIDOPSIS THALIANA
BCL-2-ASSOCIATED ATHANOGENE 6,
BCL-2-associated athanogene 6		 -0.67 0.3 -0.33
103 AT2G21200 SAUR-like auxin-responsive protein family 0.67 0.31 -0.3
104 AT1G76080 chloroplastic drought-induced stress protein of 32 kD ARABIDOPSIS THALIANA CHLOROPLASTIC
DROUGHT-INDUCED STRESS PROTEIN OF
32 KD, chloroplastic
drought-induced stress protein of
32 kD		 0.67 0.33 -0.3
105 AT5G14550 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.67 0.33 -0.31
106 AT1G47290 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 3beta-hydroxysteroid-dehydrogenase
/decarboxylase isoform 1,
3beta-hydroxysteroid-dehydrogenase
/decarboxylase isoform 1		 0.67 0.32 -0.31
107 AT3G50970 dehydrin family protein LOW TEMPERATURE-INDUCED 30, XERO2 -0.67 0.31 -0.29
108 AT3G46820 type one serine/threonine protein phosphatase 5 type one serine/threonine protein
phosphatase 5		 0.67 0.32 -0.33
109 AT1G67970 heat shock transcription factor A8 AT-HSFA8, heat shock transcription
factor A8		 -0.67 0.32 -0.32
110 AT3G52290 IQ-domain 3 IQ-domain 3 0.67 0.32 -0.33
111 AT4G30830 Protein of unknown function, DUF593 -0.66 0.33 -0.31
112 AT3G15350 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.66 0.31 -0.31
113 AT5G47020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.66 0.3 -0.3
114 AT1G51090 Heavy metal transport/detoxification superfamily protein -0.66 0.28 -0.33
115 AT5G06760 Late Embryogenesis Abundant 4-5 Late Embryogenesis Abundant 4-5,
Late Embryogenesis Abundant 4-5		 -0.66 0.31 -0.33
116 AT3G11910 ubiquitin-specific protease 13 AtUBP13, ubiquitin-specific
protease 13		 -0.66 0.34 -0.31
117 AT1G16850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to salt stress; LOCATED IN:
endomembrane system; EXPRESSED IN: leaf apex, leaf whorl,
male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six
leaves visible, LP.04 four leaves visible, LP.10 ten leaves
visible, petal differentiation and expansion stage, LP.08
eight leaves visible; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast
hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.31 -0.29
118 AT5G50380 exocyst subunit exo70 family protein F1 exocyst subunit exo70 family
protein F1, exocyst subunit exo70
family protein F1		 -0.65 0.32 -0.3
119 AT3G18440 aluminum-activated malate transporter 9 aluminum-activated malate
transporter 9, aluminum-activated
malate transporter 9		 -0.65 0.34 -0.33
120 AT5G07290 MEI2-like 4 MEI2-like 4, MEI2-like 4 -0.65 0.32 -0.33
121 AT3G18830 polyol/monosaccharide transporter 5 POLYOL TRANSPORTER 5, ARABIDOPSIS
THALIANA POLYOL/MONOSACCHARIDE
TRANSPORTER 5,
polyol/monosaccharide transporter
5		 -0.65 0.33 -0.32
122 AT3G51240 flavanone 3-hydroxylase F3'H, flavanone 3-hydroxylase,
TRANSPARENT TESTA 6		 -0.65 0.31 -0.29
123 AT1G69870 nitrate transporter 1.7 nitrate transporter 1.7 -0.64 0.33 -0.31
124 AT3G09850 D111/G-patch domain-containing protein -0.64 0.31 -0.31
125 AT5G64390 RNA-binding KH domain-containing protein HUA ENHANCER 4 -0.64 0.32 -0.32
126 AT3G15730 phospholipase D alpha 1 PLD, phospholipase D alpha 1 -0.64 0.32 -0.33
127 AT5G07990 Cytochrome P450 superfamily protein CYTOCHROME P450 75B1, D501,
TRANSPARENT TESTA 7		 -0.64 0.32 -0.31
128 AT2G26600 Glycosyl hydrolase superfamily protein -0.63 0.28 -0.33
129 AT2G46920 Protein phosphatase 2C family protein poltergeist -0.63 0.33 -0.32
130 AT1G80110 phloem protein 2-B11 phloem protein 2-B11, phloem
protein 2-B11		 -0.63 0.3 -0.33
131 AT2G41900 CCCH-type zinc finger protein with ARM repeat domain OXIDATIVE STRESS 2 -0.63 0.31 -0.31
132 AT1G49450 Transducin/WD40 repeat-like superfamily protein -0.63 0.31 -0.32
133 AT3G62700 multidrug resistance-associated protein 10 ATP-binding cassette C14,
multidrug resistance-associated
protein 10, multidrug
resistance-associated protein 10		 -0.63 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
134 C0017 sn-Glycero-3-phosphocholine sn-Glycero-3-phosphocholine L-1-Glycero-3-phosphocholine - -0.82 0.46 -0.46 C0017
135 C0221 Quercetin-3-(2''-O-α-rhamnosyl)-O-β-glucosyl-7-O-α-rhamnoside Quercetin-3-(2''-O-α-L-rhamnosyl)-O-β-D-glucosyl-7-O-α-L-rhamnoside - quercetin glucoside biosynthesis (Arabidopsis) -0.67 0.45 -0.45