AT2G39670 : -
Query Information
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AGICode AT2G39670
Description Radical SAM superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G39670 Radical SAM superfamily protein 1 0.3 -0.31
2 AT1G06190 Rho termination factor 0.95 0.31 -0.31
3 AT4G37510 Ribonuclease III family protein 0.94 0.32 -0.33
4 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.93 0.3 -0.31
5 AT4G26370 antitermination NusB domain-containing protein 0.93 0.31 -0.31
6 AT4G02990 Mitochondrial transcription termination factor family
protein		 BELAYA SMERT, RUGOSA 2 0.92 0.31 -0.33
7 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.92 0.3 -0.3
8 AT4G16390 pentatricopeptide (PPR) repeat-containing protein suppressor of variegation 7 0.92 0.31 -0.34
9 AT5G38290 Peptidyl-tRNA hydrolase family protein 0.92 0.31 -0.32
10 AT2G03420 unknown protein; Has 38 Blast hits to 38 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.91 0.31 -0.33
11 AT1G08540 RNApolymerase sigma subunit 2 ABC1, SIGMA FACTOR 1, SIGMA FACTOR
2, RNA POLYMERASE SIGMA SUBUNIT 1,
RNApolymerase sigma subunit 2,
SIGA, SIGMA FACTOR B		 0.91 0.32 -0.29
12 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.91 0.31 -0.32
13 AT1G56050 GTP-binding protein-related 0.9 0.34 -0.33
14 AT4G34290 SWIB/MDM2 domain superfamily protein 0.9 0.3 -0.3
15 AT2G35500 shikimate kinase like 2 shikimate kinase-like 2 0.9 0.32 -0.33
16 AT3G12930 Lojap-related protein 0.9 0.33 -0.3
17 AT3G53460 chloroplast RNA-binding protein 29 chloroplast RNA-binding protein 29 0.9 0.33 -0.32
18 AT3G48730 glutamate-1-semialdehyde 2,1-aminomutase 2 glutamate-1-semialdehyde
2,1-aminomutase 2		 0.9 0.32 -0.34
19 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.9 0.32 -0.33
20 AT1G79850 ribosomal protein S17 CS17, PIGMENT DEFECTIVE 347,
PLASTID RIBOSOMAL SMALL SUBUNIT
PROTEIN 17, ribosomal protein S17		 0.9 0.36 -0.31
21 AT5G11480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.89 0.29 -0.31
22 AT2G30200 catalytics;transferases;[acyl-carrier-protein]
S-malonyltransferases;binding		 EMBRYO DEFECTIVE 3147 0.89 0.31 -0.34
23 AT2G41950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 53
Blast hits to 53 proteins in 24 species: Archae - 0;
Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.89 0.31 -0.31
24 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.89 0.33 -0.32
25 AT5G48630 Cyclin family protein 0.89 0.31 -0.31
26 AT5G08280 hydroxymethylbilane synthase hydroxymethylbilane synthase 0.89 0.29 -0.32
27 AT3G04650 FAD/NAD(P)-binding oxidoreductase family protein 0.89 0.32 -0.3
28 AT2G43030 Ribosomal protein L3 family protein 0.89 0.32 -0.29
29 AT5G54180 plastid transcriptionally active 15 plastid transcriptionally active
15		 0.89 0.29 -0.3
30 AT4G39620 Tetratricopeptide repeat (TPR)-like superfamily protein A. THALIANA PENTATRICOPEPTIDE
REPEAT 5, EMBRYO DEFECTIVE 2453		 0.89 0.31 -0.31
31 AT1G14410 ssDNA-binding transcriptional regulator A. THALIANA WHIRLY 1, PTAC1,
WHIRLY 1		 0.89 0.32 -0.31
32 AT3G04790 Ribose 5-phosphate isomerase, type A protein EMBRYO DEFECTIVE 3119 0.88 0.29 -0.3
33 AT2G33450 Ribosomal L28 family 0.88 0.32 -0.29
34 AT5G20040 isopentenyltransferase 9 ARABIDOPSIS THALIANA
ISOPENTENYLTRANSFERASE 9,
isopentenyltransferase 9		 0.88 0.34 -0.33
35 AT1G55490 chaperonin 60 beta chaperonin 60 beta,
chaperonin-60beta1, LESION
INITIATION 1		 0.88 0.31 -0.32
36 AT1G80480 plastid transcriptionally active 17 plastid transcriptionally active
17		 0.88 0.32 -0.32
37 AT5G63570 glutamate-1-semialdehyde-2,1-aminomutase glutamate-1-semialdehyde-2,1-amino
mutase		 0.88 0.31 -0.32
38 AT1G48460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.88 0.31 -0.32
39 AT1G22700 Tetratricopeptide repeat (TPR)-like superfamily protein 0.88 0.3 -0.32
40 AT1G11430 plastid developmental protein DAG, putative 0.88 0.32 -0.34
41 AT5G07900 Mitochondrial transcription termination factor family
protein		 0.88 0.28 -0.3
42 AT5G55220 trigger factor type chaperone family protein 0.88 0.32 -0.31
43 AT1G16790 ribosomal protein-related 0.88 0.31 -0.31
44 AT2G14880 SWIB/MDM2 domain superfamily protein 0.88 0.3 -0.34
45 AT1G21600 plastid transcriptionally active 6 plastid transcriptionally active 6 0.88 0.34 -0.32
46 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.88 0.32 -0.31
47 AT2G31840 Thioredoxin superfamily protein Mesophyll-cell RNAi Library line
7-like		 0.87 0.33 -0.34
48 AT2G36990 RNApolymerase sigma-subunit F SIGMA FACTOR 6, SIGMA FACTOR 6,
RNApolymerase sigma-subunit F,
SOLDAT8		 0.87 0.3 -0.34
49 AT2G44640 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
chloroplast, plasma membrane, plastid, chloroplast
envelope; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3769 (InterPro:IPR022244);
BEST Arabidopsis thaliana protein match is: pigment
defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.87 0.32 -0.32
50 AT4G28660 photosystem II reaction center PSB28 protein photosystem II reaction center
PSB28 protein		 0.87 0.3 -0.3
51 AT5G01590 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 60
Blast hits to 59 proteins in 31 species: Archae - 0;
Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 0.87 0.31 -0.31
52 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 0.87 0.33 -0.3
53 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.87 0.32 -0.33
54 AT1G13270 methionine aminopeptidase 1B METHIONINE AMINOPEPTIDASE 1B,
methionine aminopeptidase 1B		 0.87 0.32 -0.32
55 AT1G33040 nascent polypeptide-associated complex subunit alpha-like
protein 5		 nascent polypeptide-associated
complex subunit alpha-like protein
5		 0.87 0.32 -0.3
56 AT1G60230 Radical SAM superfamily protein 0.87 0.32 -0.31
57 AT1G09900 Pentatricopeptide repeat (PPR-like) superfamily protein 0.87 0.32 -0.31
58 AT2G47840 Uncharacterised conserved protein ycf60 translocon at the inner envelope
membrane of chloroplasts 20-II,
translocon at the inner envelope
membrane of chloroplasts 20-II		 0.87 0.33 -0.3
59 AT1G51570 Calcium-dependent lipid-binding (CaLB domain) plant
phosphoribosyltransferase family protein		 0.87 0.34 -0.3
60 AT4G25990 CCT motif family protein CIL 0.87 0.33 -0.31
61 AT2G04530 Metallo-hydrolase/oxidoreductase superfamily protein CPZ, TRNASE Z 2 0.86 0.33 -0.3
62 AT2G39140 pseudouridine synthase family protein PIGMENT DEFECTIVE 328, SUPPRESSOR
OF VARIEGATION 1		 0.86 0.33 -0.33
63 AT3G22960 Pyruvate kinase family protein PKP-ALPHA, PLASTIDIAL PYRUVATE
KINASE 1		 0.86 0.33 -0.32
64 AT2G26580 plant-specific transcription factor YABBY family protein YABBY5 0.86 0.32 -0.32
65 AT2G43360 Radical SAM superfamily protein BIOTIN AUXOTROPH 2, BIOTIN
AUXOTROPH B		 0.86 0.32 -0.33
66 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.86 0.31 -0.31
67 AT2G31170 Cysteinyl-tRNA synthetase, class Ia family protein FIONA, cysteinyl t-RNA synthetase 0.86 0.31 -0.31
68 AT2G43630 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
thylakoid membrane, chloroplast, nucleus, chloroplast
envelope; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67
Blast hits to 67 proteins in 20 species: Archae - 0;
Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses
- 2; Other Eukaryotes - 2 (source: NCBI BLink).		 0.86 0.32 -0.32
69 AT2G22230 Thioesterase superfamily protein 0.86 0.33 -0.32
70 AT1G53800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits
to 882 proteins in 242 species: Archae - 2; Bacteria - 216;
Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other
Eukaryotes - 493 (source: NCBI BLink).		 0.86 0.33 -0.3
71 AT4G24770 31-kDa RNA binding protein ARABIDOPSIS THALIANA RNA BINDING
PROTEIN, APPROXIMATELY 31 KD,
ATRBP33, CP31, 31-kDa RNA binding
protein		 0.86 0.3 -0.33
72 AT3G06980 DEA(D/H)-box RNA helicase family protein 0.86 0.31 -0.31
73 AT5G55580 Mitochondrial transcription termination factor family
protein		 0.86 0.33 -0.31
74 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.86 0.32 -0.3
75 AT5G55280 homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 ARABIDOPSIS THALIANA HOMOLOG OF
BACTERIAL CYTOKINESIS Z-RING
PROTEIN FTSZ 1-1, CHLOROPLAST
FTSZ, homolog of bacterial
cytokinesis Z-ring protein FTSZ
1-1		 0.86 0.32 -0.3
76 AT4G34730 ribosome-binding factor A family protein 0.85 0.3 -0.3
77 AT5G19750 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 0.85 0.3 -0.29
78 AT3G08740 elongation factor P (EF-P) family protein 0.85 0.31 -0.32
79 AT5G59500 protein C-terminal S-isoprenylcysteine carboxyl
O-methyltransferases		 0.85 0.31 -0.31
80 AT3G13470 TCP-1/cpn60 chaperonin family protein chaperonin-60beta2 0.85 0.32 -0.31
81 AT4G30580 Phospholipid/glycerol acyltransferase family protein ATS2, EMBRYO DEFECTIVE 1995,
lysophosphatidic acid
acyltransferase 1		 0.85 0.31 -0.32
82 AT5G23310 Fe superoxide dismutase 3 Fe superoxide dismutase 3 0.85 0.3 -0.31
83 AT5G66530 Galactose mutarotase-like superfamily protein 0.85 0.32 -0.3
84 AT4G39960 Molecular chaperone Hsp40/DnaJ family protein 0.85 0.32 -0.3
85 AT4G28210 embryo defective 1923 embryo defective 1923 0.85 0.31 -0.3
86 AT3G19220 protein disulfide isomerases SHI-YO-U MEANS COTYLEDON IN
JAPANESE, SNOWY COTYLEDON 2		 0.85 0.32 -0.32
87 AT5G63050 embryo defective 2759 embryo defective 2759 0.85 0.28 -0.33
88 AT3G53900 uracil phosphoribosyltransferase PYRIMIDINE R, uracil
phosphoribosyltransferase		 0.85 0.3 -0.33
89 AT1G74850 plastid transcriptionally active 2 PIGMENT DEFECTIVE 343, plastid
transcriptionally active 2		 0.85 0.32 -0.33
90 AT5G51100 Fe superoxide dismutase 2 Fe superoxide dismutase 2 0.85 0.31 -0.34
91 AT3G63410 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ALBINO OR PALE GREEN MUTANT 1,
E37, INNER ENVELOPE PROTEIN 37,
VITAMIN E DEFECTIVE 3		 0.85 0.3 -0.32
92 AT1G74970 ribosomal protein S9 ribosomal protein S9, TWN3 0.85 0.32 -0.31
93 AT3G25290 Auxin-responsive family protein -0.82 0.32 -0.31
94 AT1G20490 AMP-dependent synthetase and ligase family protein -0.8 0.31 -0.3
95 AT1G63440 heavy metal atpase 5 heavy metal atpase 5 -0.8 0.32 -0.3
96 AT5G63970 Copine (Calcium-dependent phospholipid-binding protein)
family		 -0.8 0.3 -0.3
97 AT2G41220 glutamate synthase 2 glutamate synthase 2 -0.8 0.32 -0.32
98 AT1G26730 EXS (ERD1/XPR1/SYG1) family protein -0.79 0.29 -0.32
99 AT2G38800 Plant calmodulin-binding protein-related -0.79 0.3 -0.32
100 AT3G14060 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G54120.1); Has 30 Blast hits
to 30 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.78 0.32 -0.31
101 AT3G03310 lecithin:cholesterol acyltransferase 3 ARABIDOPSIS LECITHIN:CHOLESTEROL
ACYLTRANSFERASE 3,
lecithin:cholesterol
acyltransferase 3		 -0.78 0.34 -0.33
102 AT5G18780 F-box/RNI-like superfamily protein -0.78 0.32 -0.31
103 AT3G16340 pleiotropic drug resistance 1 ATP-binding cassette G29,
PLEIOTROPIC DRUG RESISTANCE 1,
pleiotropic drug resistance 1		 -0.76 0.3 -0.32
104 AT2G30360 SOS3-interacting protein 4 CBL-INTERACTING PROTEIN KINASE 11,
PROTEIN KINASE SOS2-LIKE 5,
SOS3-interacting protein 4,
SNF1-RELATED PROTEIN KINASE 3.22		 -0.75 0.32 -0.3
105 AT5G02230 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.75 0.32 -0.33
106 AT5G59490 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.75 0.31 -0.3
107 AT5G37540 Eukaryotic aspartyl protease family protein -0.74 0.31 -0.32
108 AT1G78280 transferases, transferring glycosyl groups -0.73 0.31 -0.32
109 AT1G30270 CBL-interacting protein kinase 23 ATCIPK23, CBL-interacting protein
kinase 23, LOW-K+-SENSITIVE 1,
SOS2-like protein kinase 17,
SNF1-RELATED PROTEIN KINASE 3.23		 -0.72 0.33 -0.32
110 AT3G12760 CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation
protein (InterPro:IPR014764), Protein of unknown function
DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast
hits to 855 proteins in 202 species: Archae - 0; Bacteria -
0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0;
Other Eukaryotes - 82 (source: NCBI BLink).		 -0.71 0.34 -0.32
111 AT2G39310 jacalin-related lectin 22 jacalin-related lectin 22 -0.71 0.31 -0.32
112 AT3G61850 Dof-type zinc finger DNA-binding family protein dof affecting germination 1 -0.71 0.3 -0.32
113 AT1G70300 K+ uptake permease 6 K+ uptake permease 6 -0.7 0.32 -0.3
114 AT2G34500 cytochrome P450, family 710, subfamily A, polypeptide 1 cytochrome P450, family 710,
subfamily A, polypeptide 1		 -0.7 0.31 -0.34
115 AT3G20660 organic cation/carnitine transporter4 organic cation/carnitine
transporter4, organic
cation/carnitine transporter4		 -0.69 0.3 -0.32
116 AT5G60890 myb domain protein 34 ATMYB34, ALTERED TRYPTOPHAN
REGULATION 1, myb domain protein
34		 -0.69 0.32 -0.31
117 AT1G04440 casein kinase like 13 casein kinase like 13 -0.68 0.31 -0.31
118 AT2G25790 Leucine-rich receptor-like protein kinase family protein -0.68 0.31 -0.32