AGICode | AT2G42240 |
Description | RNA-binding (RRM/RBD/RNP motifs) family protein |
Gene Code | Description / Information | Gene name | Correlation | link | ||||
---|---|---|---|---|---|---|---|---|
pcc | 2.5% | 97.5% | PPI | |||||
1 | AT2G42240 | RNA-binding (RRM/RBD/RNP motifs) family protein | 1 | 0.32 | -0.31 | |||
2 | AT3G62610 | myb domain protein 11 | myb domain protein 11, myb domain protein 11, PRODUCTION OF FLAVONOL GLYCOSIDES 2 |
-0.7 | 0.31 | -0.31 | ||
3 | AT5G37680 | ADP-ribosylation factor-like A1A | ADP-ribosylation factor-like A1A, ADP-ribosylation factor-like A1A |
0.7 | 0.31 | -0.31 | ||
4 | AT2G43480 | Peroxidase superfamily protein | -0.69 | 0.33 | -0.31 | |||
5 | AT2G27290 | Protein of unknown function (DUF1279) | 0.67 | 0.32 | -0.32 | |||
6 | AT1G59760 | RNA helicase, ATP-dependent, SK12/DOB1 protein | AtMTR4, homolog of yeast MTR4 | -0.65 | 0.3 | -0.29 | ||
7 | AT5G02310 | proteolysis 6 | proteolysis 6 | 0.65 | 0.3 | -0.31 | ||
8 | AT2G23410 | cis-prenyltransferase | cis-prenyltransferase, cis-prenyltransferase |
-0.65 | 0.32 | -0.29 | ||
9 | AT2G44530 | Phosphoribosyltransferase family protein | 0.64 | 0.33 | -0.31 | |||
10 | AT3G62800 | double-stranded-RNA-binding protein 4 | double-stranded-RNA-binding protein 4 |
0.63 | 0.3 | -0.31 | ||
11 | AT4G04470 | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | PMP22 | 0.63 | 0.32 | -0.31 | ||
12 | AT5G03430 | phosphoadenosine phosphosulfate (PAPS) reductase family protein |
0.63 | 0.33 | -0.31 | |||
13 | AT1G74550 | cytochrome P450, family 98, subfamily A, polypeptide 9 | cytochrome P450, family 98, subfamily A, polypeptide 9 |
-0.63 | 0.3 | -0.31 | ||
14 | AT4G15300 | cytochrome P450, family 702, subfamily A, polypeptide 2 | cytochrome P450, family 702, subfamily A, polypeptide 2 |
-0.62 | 0.31 | -0.31 | ||
15 | AT3G43420 | unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
0.62 | 0.3 | -0.33 | |||
16 | AT3G49190 | O-acyltransferase (WSD1-like) family protein | -0.62 | 0.31 | -0.32 | |||
17 | AT4G02670 | indeterminate(ID)-domain 12 | indeterminate(ID)-domain 12, indeterminate(ID)-domain 12 |
0.62 | 0.3 | -0.3 | ||
18 | AT5G66390 | Peroxidase superfamily protein | -0.61 | 0.31 | -0.31 | |||
19 | AT5G45070 | phloem protein 2-A8 | phloem protein 2-A8, phloem protein 2-A8 |
-0.61 | 0.3 | -0.3 | ||
20 | AT5G41960 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
0.61 | 0.32 | -0.3 | |||
21 | AT1G51360 | dimeric A/B barrel domainS-protein 1 | DIMERIC A/B BARREL DOMAINS-PROTEIN 1, dimeric A/B barrel domainS-protein 1 |
0.61 | 0.3 | -0.33 | ||
22 | AT1G55820 | Kinase-related protein of unknown function (DUF1296) | -0.61 | 0.31 | -0.3 | |||
23 | AT4G33310 | unknown protein; Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
-0.6 | 0.31 | -0.31 | |||
24 | AT5G43040 | Cysteine/Histidine-rich C1 domain family protein | -0.6 | 0.34 | -0.31 | |||
25 | AT1G01160 | GRF1-interacting factor 2 | GRF1-interacting factor 2 | 0.6 | 0.34 | -0.34 | ||
26 | AT5G08305 | Pentatricopeptide repeat (PPR) superfamily protein | -0.6 | 0.31 | -0.32 | |||
27 | AT1G53270 | ABC-2 type transporter family protein | ATP-binding cassette G10 | -0.59 | 0.33 | -0.31 | ||
28 | AT3G03980 | NAD(P)-binding Rossmann-fold superfamily protein | 0.59 | 0.33 | -0.32 | |||
29 | AT3G30585 | transposable element gene | 0.59 | 0.32 | -0.29 | |||
30 | AT3G18770 | Autophagy-related protein 13 | -0.58 | 0.33 | -0.32 | |||
31 | AT3G13965 | pseudogene, hypothetical protein | -0.58 | 0.32 | -0.32 | |||
32 | AT3G60760 | unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
-0.58 | 0.33 | -0.33 | |||
33 | AT2G40815 | Calcium-dependent lipid-binding (CaLB domain) family protein |
0.58 | 0.33 | -0.31 | |||
34 | AT5G61960 | MEI2-like protein 1 | MEI2-like protein 1, MEI2-like protein 1 |
-0.58 | 0.32 | -0.32 | ||
35 | AT3G10400 | RNA recognition motif and CCHC-type zinc finger domains containing protein |
U11/U12-31K | 0.57 | 0.33 | -0.33 | ||
36 | AT5G22600 | FBD / Leucine Rich Repeat domains containing protein | 0.57 | 0.31 | -0.32 | |||
37 | AT1G43810 | unknown protein; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
-0.57 | 0.3 | -0.3 | |||
38 | AT2G42860 | unknown protein; Has 446 Blast hits to 326 proteins in 94 species: Archae - 0; Bacteria - 32; Metazoa - 113; Fungi - 93; Plants - 21; Viruses - 4; Other Eukaryotes - 183 (source: NCBI BLink). |
0.56 | 0.32 | -0.3 | |||
39 | AT5G57260 | cytochrome P450, family 71, subfamily B, polypeptide 10 | cytochrome P450, family 71, subfamily B, polypeptide 10 |
0.56 | 0.32 | -0.32 | ||
40 | AT5G62600 | ARM repeat superfamily protein | modifier of snc1-1, 14 | -0.56 | 0.31 | -0.31 | ||
41 | AT1G19930 | Galactose oxidase/kelch repeat superfamily protein | -0.56 | 0.32 | -0.31 | |||
42 | AT1G21950 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21940.1); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
-0.56 | 0.3 | -0.32 | |||
43 | AT5G49270 | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family |
COBRA-LIKE 9, DEFORMED ROOT HAIRS 9, MUTANT ROOT HAIR 4, SHAVEN 2 |
-0.56 | 0.32 | -0.32 | ||
44 | AT1G68940 | Armadillo/beta-catenin-like repeat family protein | -0.56 | 0.33 | -0.31 | |||
45 | AT2G13550 | unknown protein; Has 23 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). |
-0.56 | 0.3 | -0.32 | |||
46 | AT5G07190 | seed gene 3 | seed gene 3 | -0.56 | 0.31 | -0.32 | ||
47 | AT5G26960 | Galactose oxidase/kelch repeat superfamily protein | 0.56 | 0.32 | -0.33 | |||
48 | AT3G58970 | magnesium transporter 6 | magnesium transporter 6, MRS2-4 | 0.55 | 0.31 | -0.31 | ||
49 | AT2G41300 | strictosidine synthase-like 1 | strictosidine synthase-like 1 | -0.55 | 0.32 | -0.32 | ||
50 | AT3G13140 | hydroxyproline-rich glycoprotein family protein | 0.55 | 0.32 | -0.32 | |||
51 | AT3G30620 | transposable element gene | -0.55 | 0.31 | -0.28 | |||
52 | AT5G50410 | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
0.55 | 0.32 | -0.3 | |||
53 | AT1G03840 | C2H2 and C2HC zinc fingers superfamily protein | Magpie | -0.55 | 0.31 | -0.31 | ||
54 | AT1G49490 | Leucine-rich repeat (LRR) family protein | -0.54 | 0.32 | -0.3 | |||
55 | AT4G05240 | Ubiquitin-like superfamily protein | -0.54 | 0.32 | -0.33 | |||
56 | AT4G07600 | transposable element gene | -0.54 | 0.3 | -0.32 | |||
57 | AT1G63590 | Receptor-like protein kinase-related family protein | 0.54 | 0.31 | -0.33 | |||
58 | AT3G27510 | Cysteine/Histidine-rich C1 domain family protein | -0.54 | 0.33 | -0.31 | |||
59 | AT4G04530 | transposable element gene | 0.54 | 0.31 | -0.33 | |||
60 | AT2G21940 | shikimate kinase 1 | ATSK1, shikimate kinase 1 | 0.54 | 0.32 | -0.31 | ||
61 | AT4G33925 | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
suppressor of sni1 2 | 0.53 | 0.3 | -0.29 | ||
62 | AT4G30660 | Low temperature and salt responsive protein family | 0.53 | 0.31 | -0.32 | |||
63 | AT2G41060 | RNA-binding (RRM/RBD/RNP motifs) family protein | -0.53 | 0.32 | -0.33 | |||
64 | AT3G45820 | unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
-0.53 | 0.31 | -0.31 |
CID | Metabolite name | Pathway Information | Correlation | link | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Compound name | Stereochemistry | Aracyc name | pcc | 2.5% | 97.5% | PPI | ||||
65 | C0008 | γ-Aminobutyric acid | - | 4-Aminobutyrate | glutamate degradation IV, 4-aminobutyrate degradation IV, putrescine degradation IV |
-0.59 | 0.3 | -0.33 | ||
66 | C0219 | Pyroglutamic acid | (2R,2S)-Pyroglutamic acid | 5-Oxoproline | gamma-glutamyl cycle (plant pathway), gamma-glutamyl cycle |
0.58 | 0.33 | -0.31 |