AT2G42280 : -
Query Information
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AGICode AT2G42280
Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G42280 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 1 0.32 -0.31
2 AT2G41230 unknown protein; Has 75 Blast hits to 75 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 ORGAN SIZE RELATED 1 0.8 0.3 -0.32
3 AT3G48990 AMP-dependent synthetase and ligase family protein 0.77 0.33 -0.3
4 AT5G01210 HXXXD-type acyl-transferase family protein 0.77 0.33 -0.32
5 AT4G02380 senescence-associated gene 21 Arabidopsis thaliana late
embryogenensis abundant like 5,
senescence-associated gene 21		 0.75 0.32 -0.3
6 AT4G12470 azelaic acid induced 1 azelaic acid induced 1 0.75 0.32 -0.32
7 AT4G26790 GDSL-like Lipase/Acylhydrolase superfamily protein -0.75 0.3 -0.32
8 AT3G22425 imidazoleglycerol-phosphate dehydratase HISN5A,
imidazoleglycerol-phosphate
dehydratase		 -0.75 0.33 -0.3
9 AT2G45210 SAUR-like auxin-responsive protein family 0.74 0.3 -0.33
10 AT5G14000 NAC domain containing protein 84 NAC domain containing protein 84,
NAC domain containing protein 84		 0.73 0.3 -0.3
11 AT5G09220 amino acid permease 2 amino acid permease 2 -0.71 0.32 -0.32
12 AT1G77380 amino acid permease 3 amino acid permease 3, ATAAP3 0.71 0.31 -0.32
13 AT3G59900 auxin-regulated gene involved in organ size AUXIN-REGULATED GENE INVOLVED IN
ORGAN SIZE		 0.71 0.33 -0.29
14 AT4G05390 root FNR 1 root FNR 1, root FNR 1 0.71 0.34 -0.32
15 AT4G18780 cellulose synthase family protein CELLULOSE SYNTHASE 8, CELLULOSE
SYNTHASE 8, IRREGULAR XYLEM 1,
LEAF WILTING 2		 -0.7 0.32 -0.32
16 AT5G44390 FAD-binding Berberine family protein 0.69 0.33 -0.34
17 AT5G17420 Cellulose synthase family protein ATCESA7, CELLULOSE SYNTHASE
CATALYTIC SUBUNIT 7, IRREGULAR
XYLEM 3, MURUS 10		 -0.68 0.33 -0.32
18 AT4G17070 peptidyl-prolyl cis-trans isomerases 0.68 0.3 -0.32
19 AT1G15040 Class I glutamine amidotransferase-like superfamily protein 0.68 0.31 -0.32
20 AT1G62790 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.68 0.31 -0.28
21 AT2G34080 Cysteine proteinases superfamily protein 0.68 0.31 -0.29
22 AT1G22160 Protein of unknown function (DUF581) -0.67 0.33 -0.31
23 AT2G40940 ethylene response sensor 1 ETHYLENE RESPONSE SENSOR, ethylene
response sensor 1		 0.67 0.33 -0.31
24 AT1G07390 receptor like protein 1 receptor like protein 1, receptor
like protein 1		 0.67 0.32 -0.29
25 AT2G44080 ARGOS-like ARGOS-like 0.67 0.3 -0.31
26 AT3G29810 COBRA-like protein 2 precursor COBRA-like protein 2 precursor 0.66 0.33 -0.31
27 AT1G18810 phytochrome kinase substrate-related -0.66 0.32 -0.33
28 AT5G62130 Per1-like family protein -0.66 0.3 -0.3
29 AT3G14610 cytochrome P450, family 72, subfamily A, polypeptide 7 cytochrome P450, family 72,
subfamily A, polypeptide 7		 0.66 0.32 -0.32
30 AT5G64120 Peroxidase superfamily protein 0.65 0.32 -0.32
31 AT1G21910 Integrase-type DNA-binding superfamily protein dehydration response
element-binding protein 26		 0.65 0.29 -0.32
32 AT5G03730 Protein kinase superfamily protein AtCTR1, CONSTITUTIVE TRIPLE
RESPONSE 1, SUGAR-INSENSITIVE 1		 0.65 0.34 -0.32
33 AT4G18270 translocase 11 ARABIDOPSIS THALIANA TRANSLOCASE
11, translocase 11		 -0.65 0.32 -0.31
34 AT1G77840 Translation initiation factor IF2/IF5 0.64 0.31 -0.31
35 AT3G02240 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 7 0.64 0.32 -0.3
36 AT3G01550 phosphoenolpyruvate (pep)/phosphate translocator 2 PHOSPHOENOLPYRUVATE
(PEP)/PHOSPHATE TRANSLOCATOR 2,
phosphoenolpyruvate
(pep)/phosphate translocator 2		 -0.64 0.31 -0.31
37 AT5G44670 Domain of unknown function (DUF23) -0.63 0.34 -0.3
38 AT1G49820 S-methyl-5-thioribose kinase S-methyl-5-thioribose kinase,
S-methyl-5-thioribose kinase,
5-methylthioribose kinase 1		 0.63 0.34 -0.31
39 AT5G12170 CRT (chloroquine-resistance transporter)-like transporter 3 CRT (chloroquine-resistance
transporter)-like transporter 3		 0.62 0.31 -0.34
40 AT2G34290 Protein kinase superfamily protein -0.62 0.32 -0.3
41 AT2G28760 UDP-XYL synthase 6 UDP-XYL synthase 6 -0.62 0.3 -0.3
42 AT3G46690 UDP-Glycosyltransferase superfamily protein 0.62 0.34 -0.32
43 AT2G43350 glutathione peroxidase 3 glutathione peroxidase 3,
glutathione peroxidase 3		 0.62 0.32 -0.34
44 AT1G06700 Protein kinase superfamily protein 0.62 0.33 -0.31
45 AT5G67060 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 HECATE 1 0.62 0.32 -0.33
46 AT2G39980 HXXXD-type acyl-transferase family protein 0.61 0.33 -0.31
47 AT5G37180 sucrose synthase 5 ARABIDOPSIS THALIANA SUCROSE
SYNTHASE 5, sucrose synthase 5		 -0.61 0.32 -0.31
48 AT2G29340 NAD-dependent epimerase/dehydratase family protein 0.61 0.3 -0.33
49 AT5G03130 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.61 0.34 -0.31
50 AT1G30000 alpha-mannosidase 3 alpha-mannosidase 3 0.61 0.32 -0.35
51 AT4G21400 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 cysteine-rich RLK (RECEPTOR-like
protein kinase) 28		 0.61 0.32 -0.31
52 AT2G39660 botrytis-induced kinase1 botrytis-induced kinase1 0.61 0.35 -0.31
53 AT5G53980 homeobox protein 52 homeobox protein 52, homeobox
protein 52		 0.61 0.32 -0.34
54 AT4G15260 UDP-Glycosyltransferase superfamily protein 0.61 0.31 -0.31
55 AT5G49690 UDP-Glycosyltransferase superfamily protein 0.6 0.31 -0.31
56 AT5G20930 Protein kinase superfamily protein TOUSLED -0.6 0.32 -0.31
57 AT5G04390 C2H2-type zinc finger family protein 0.6 0.31 -0.31
58 AT1G51860 Leucine-rich repeat protein kinase family protein 0.6 0.32 -0.32
59 AT5G25350 EIN3-binding F box protein 2 EIN3-binding F box protein 2 0.6 0.31 -0.29
60 AT5G19950 Domain of unknown function (DUF1767) 0.6 0.32 -0.32
61 AT1G32250 Calcium-binding EF-hand family protein 0.6 0.32 -0.31
62 AT5G39610 NAC domain containing protein 6 Arabidopsis NAC domain containing
protein 92, NAC domain containing
protein 2, NAC domain containing
protein 6, NAC domain containing
protein 2, NAC domain containing
protein 6, ORESARA 1		 0.6 0.35 -0.32
63 AT5G07400 forkhead-associated domain-containing protein / FHA
domain-containing protein		 0.59 0.32 -0.31
64 AT2G46530 auxin response factor 11 auxin response factor 11 -0.59 0.32 -0.31
65 AT3G19370 Plant protein of unknown function (DUF869) -0.59 0.3 -0.33
66 AT1G67865 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G67860.1); Has 13 Blast hits
to 13 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.31 -0.32
67 AT5G05710 Pleckstrin homology (PH) domain superfamily protein 0.59 0.33 -0.3
68 AT2G32860 beta glucosidase 33 beta glucosidase 33 -0.59 0.31 -0.31
69 AT5G54690 galacturonosyltransferase 12 galacturonosyltransferase 12,
IRREGULAR XYLEM 8, LGT6		 -0.59 0.32 -0.31
70 AT3G14410 Nucleotide/sugar transporter family protein 0.59 0.32 -0.3
71 AT3G61630 cytokinin response factor 6 cytokinin response factor 6 0.59 0.32 -0.33
72 AT5G23405 HMG-box (high mobility group) DNA-binding family protein 0.59 0.33 -0.33
73 AT4G13660 pinoresinol reductase 2 ATPRR2, pinoresinol reductase 2 0.59 0.33 -0.32
74 AT5G49700 Predicted AT-hook DNA-binding family protein 0.59 0.32 -0.3
75 AT5G35970 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.59 0.33 -0.29
76 AT1G78950 Terpenoid cyclases family protein -0.59 0.32 -0.32
77 AT2G38080 Laccase/Diphenol oxidase family protein ARABIDOPSIS LACCASE-LIKE
MULTICOPPER OXIDASE 4, IRREGULAR
XYLEM 12, LACCASE 4, LACCASE-LIKE
MULTICOPPER OXIDASE 4		 -0.58 0.32 -0.32
78 AT3G53420 plasma membrane intrinsic protein 2A PLASMA MEMBRANE INTRINSIC PROTEIN
2, PLASMA MEMBRANE INTRINSIC
PROTEIN 2;1, plasma membrane
intrinsic protein 2A		 -0.58 0.31 -0.3
79 AT2G32100 ovate family protein 16 RABIDOPSIS THALIANA OVATE FAMILY
PROTEIN 16, ovate family protein
16		 -0.58 0.3 -0.31
80 AT4G32270 Ubiquitin-like superfamily protein -0.58 0.3 -0.33
81 AT4G25480 dehydration response element B1A ATCBF3, C-REPEAT BINDING FACTOR
3, dehydration response element
B1A		 -0.58 0.29 -0.33
82 AT3G60880 dihydrodipicolinate synthase 1 DIHYDRODIPICOLINATE SYNTHASE,
dihydrodipicolinate synthase 1		 0.58 0.32 -0.32
83 AT5G12170 CRT (chloroquine-resistance transporter)-like transporter 3 CRT (chloroquine-resistance
transporter)-like transporter 3		 0.58 0.31 -0.29
84 AT5G38070 RING/FYVE/PHD zinc finger superfamily protein -0.58 0.32 -0.33
85 AT2G31440 INVOLVED IN: positive regulation of catalytic activity,
protein processing; LOCATED IN: integral to membrane;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: Aph-1
(InterPro:IPR009294); Has 268 Blast hits to 262 proteins in
79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi
- 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22
(source: NCBI BLink).		 -0.57 0.31 -0.32
86 AT4G11080 HMG (high mobility group) box protein 3xHigh Mobility Group-box1 -0.57 0.3 -0.31
87 AT1G27190 Leucine-rich repeat protein kinase family protein -0.57 0.33 -0.3
88 AT4G21760 beta-glucosidase 47 beta-glucosidase 47 -0.57 0.32 -0.33
89 AT1G77310 BEST Arabidopsis thaliana protein match is:
wound-responsive family protein (TAIR:AT1G21610.1); Has 493
Blast hits to 482 proteins in 163 species: Archae - 0;
Bacteria - 100; Metazoa - 172; Fungi - 66; Plants - 65;
Viruses - 7; Other Eukaryotes - 83 (source: NCBI BLink).		 -0.57 0.32 -0.3
90 AT2G20750 expansin B1 expansin B1, ATHEXP BETA 1.5,
expansin B1		 -0.57 0.34 -0.32
91 AT5G26330 Cupredoxin superfamily protein -0.56 0.31 -0.32
92 AT2G29970 Double Clp-N motif-containing P-loop nucleoside
triphosphate hydrolases superfamily protein		 -0.56 0.31 -0.32
93 AT1G07485 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: shoot apex,
embryo, leaf whorl, pedicel; EXPRESSED DURING: 4 anthesis,
D bilateral stage; Has 5 Blast hits to 5 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.56 0.3 -0.33
94 AT5G43150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 -0.56 0.32 -0.3
95 AT2G39850 Subtilisin-like serine endopeptidase family protein -0.55 0.29 -0.31
96 AT3G01670 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G01680.1); Has 121 Blast hits
to 111 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 sieve element occlusion a -0.55 0.31 -0.31
97 AT4G28150 Protein of unknown function (DUF789) -0.54 0.33 -0.31
98 AT3G13980 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits
to 418 proteins in 98 species: Archae - 0; Bacteria - 6;
Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other
Eukaryotes - 1059 (source: NCBI BLink).		 -0.54 0.32 -0.33
99 AT4G24250 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 13,
MILDEW RESISTANCE LOCUS O 13		 -0.54 0.3 -0.33
100 AT5G65480 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G38060.2); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.54 0.32 -0.32
101 AT1G22210 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 trehalose-6-phosphate phosphatase
C		 -0.54 0.3 -0.35
102 AT1G64780 ammonium transporter 1;2 ammonium transporter 1;2, ammonium
transporter 1;2		 -0.54 0.29 -0.31
103 AT3G27350 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G40700.1); Has 230 Blast
hits to 202 proteins in 35 species: Archae - 0; Bacteria -
3; Metazoa - 77; Fungi - 4; Plants - 130; Viruses - 0;
Other Eukaryotes - 16 (source: NCBI BLink).		 -0.54 0.32 -0.31
104 AT4G01210 glycosyl transferase family 1 protein -0.54 0.31 -0.32
105 AT1G77740 phosphatidylinositol-4-phosphate 5-kinase 2 phosphatidylinositol-4-phosphate
5-kinase 2		 -0.54 0.32 -0.33
106 AT5G13300 ARF GTPase-activating protein ARF-GAP DOMAIN3, SCARFACE, ASCULAR
NETWORK DEFECTIVE 3		 -0.54 0.33 -0.3
107 AT2G37090 Nucleotide-diphospho-sugar transferases superfamily protein IRREGULAR XYLEM 9 -0.54 0.31 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
108 C0016 S-Adenosylmethionine S-Adenosyl-L-methionine S-Adenosyl-L-methionine ethylene biosynthesis I (plants),
scopoletin biosynthesis,
quercetinsulphates biosynthesis,
siroheme biosynthesis,
gibberellin inactivation II (methylation),
suberin biosynthesis,
volatile benzenoid biosynthesis I (ester formation),
S-adenosyl-L-methionine cycle II,
methylhalides biosynthesis (plants),
S-methylmethionine cycle,
ubiquinol-9 biosynthesis (eukaryotic),
nicotianamine biosynthesis,
methionine biosynthesis II,
spermine biosynthesis,
choline biosynthesis II,
diphthamide biosynthesis,
homogalacturonan biosynthesis,
phosphatidylcholine biosynthesis II,
methylquercetin biosynthesis,
plastoquinol biosynthesis,
chlorophyllide a biosynthesis I,
ferulate and sinapate biosynthesis,
ubiquinol-10 biosynthesis (eukaryotic),
phenylpropanoid biosynthesis,
free phenylpropanoid acid biosynthesis,
seleno-amino acid detoxification and volatilization I,
plant sterol biosynthesis,
lipoate biosynthesis and incorporation I,
methyl indole-3-acetate interconversion,
cyclopropane and cyclopropene fatty acid biosynthesis,
spermidine biosynthesis I,
thiamine biosynthesis II,
methionine salvage pathway,
spermidine hydroxycinnamic acid conjugates biosynthesis,
simple coumarins biosynthesis,
phosphatidylcholine biosynthesis IV,
glutathione-mediated detoxification II,
S-adenosyl-L-methionine biosynthesis,
methionine degradation I (to homocysteine),
phosphatidylcholine biosynthesis III,
phylloquinol biosynthesis,
choline biosynthesis I,
biotin biosynthesis II,
vitamin E biosynthesis 		-0.82 0.46 -0.47 C0016
109 C0256 Tryptamine - Tryptamine IAA biosynthesis I -0.68 0.46 -0.45 C0256
110 C0142 Malonic acid - Malonate fatty acid biosynthesis (plant mitochondria) -0.62 0.34 -0.31 C0142