C0055 : Alanine
Query Information
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ID C0055
Compound name Alanine
External link   http://pmn.plantcyc.org/ARA/NEW-IMAGE?type=COMPOUND&object=L-ALPHA-ALANINE
Pathway Information alanine degradation III,
beta-alanine biosynthesis II,
biotin biosynthesis II,
IAA biosynthesis II,
molybdenum cofactor biosynthesis II (eukaryotes),
phenylalanine degradation III,
alanine biosynthesis III,
IAA biosynthesis I,
alanine biosynthesis II,
tRNA charging,
molybdenum cofactor biosynthesis,
4-aminobutyrate degradation IV,
alanine degradation II (to D-lactate),
indole-3-acetyl-amino acid biosynthesis,
glutamate degradation IV
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G42360 RING/U-box superfamily protein 0.73 0.3 -0.32
2 AT2G41730 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G24640.1); Has 25 Blast hits
to 25 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.69 0.3 -0.31
3 AT5G01390 DNAJ heat shock family protein -0.68 0.32 -0.31
4 AT5G43700 AUX/IAA transcriptional regulator family protein AUXIN INDUCIBLE 2-11,
indole-3-acetic acid inducible 4		 -0.67 0.33 -0.31
5 AT3G50770 calmodulin-like 41 calmodulin-like 41 0.66 0.31 -0.31
6 AT1G77250 RING/FYVE/PHD-type zinc finger family protein -0.66 0.32 -0.31
7 AT3G11340 UDP-Glycosyltransferase superfamily protein UDP-dependent glycosyltransferase
76B1		 0.66 0.33 -0.3
8 AT4G23260 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 cysteine-rich RLK (RECEPTOR-like
protein kinase) 18		 0.65 0.33 -0.29
9 AT3G29370 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits
to 16 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 P1R3 -0.64 0.34 -0.33
10 AT2G40540 potassium transporter 2 ATKT2, ATKUP2, potassium
transporter 2, KUP2, SHY3, TRK2		 -0.63 0.3 -0.34
11 AT2G23330 transposable element gene 0.63 0.34 -0.3
12 AT1G29500 SAUR-like auxin-responsive protein family -0.63 0.3 -0.3
13 AT5G44570 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: leaf whorl, hypocotyl,
sepal, flower, leaf; EXPRESSED DURING: petal
differentiation and expansion stage, LP.08 eight leaves
visible; Has 7 Blast hits to 7 proteins in 2 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.62 0.32 -0.3
14 AT4G23700 cation/H+ exchanger 17 cation/H+ exchanger 17, cation/H+
exchanger 17		 0.61 0.32 -0.31
15 AT5G02630 Lung seven transmembrane receptor family protein 0.61 0.32 -0.31
16 AT4G38620 myb domain protein 4 myb domain protein 4, myb domain
protein 4		 0.6 0.33 -0.32
17 AT3G43210 ATP binding microtubule motor family protein ARABIDOPSIS NPK1-ACTIVATING
KINESIN 2, NPK1-ACTIVATING KINESIN
2, TETRASPORE		 -0.6 0.31 -0.31
18 AT5G60230 splicing endonuclease 2 SPLICING ENDONUCLEASE 2, splicing
endonuclease 2		 -0.6 0.31 -0.31
19 AT2G01980 sodium proton exchanger, putative (NHX7) (SOS1) ARABIDOPSIS NA+/H+ ANTIPORTER 7,
ARABIDOPSIS SALT OVERLY SENSITIVE
1, SALT OVERLY SENSITIVE 1		 0.6 0.3 -0.32
20 AT3G02240 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 7 0.59 0.33 -0.31
21 AT2G20800 NAD(P)H dehydrogenase B4 NAD(P)H dehydrogenase B4 0.59 0.31 -0.3
22 AT5G02780 glutathione transferase lambda 1 glutathione transferase lambda 1 0.59 0.32 -0.31
23 AT5G04190 phytochrome kinase substrate 4 phytochrome kinase substrate 4 -0.57 0.31 -0.31
24 AT2G19980 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 -0.56 0.29 -0.33
25 AT4G03560 two-pore channel 1 CALCIUM CHANNEL 1, two-pore
channel 1, FATTY ACID OXYGENATION
UPREGULATED 2, TPC1, two-pore
channel 1		 -0.55 0.32 -0.29
26 AT3G15410 Leucine-rich repeat (LRR) family protein -0.55 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
27 C0055 Alanine D,L-Alanine D-Alanine; L-Alanine alanine degradation III,
beta-alanine biosynthesis II,
biotin biosynthesis II,
IAA biosynthesis II,
molybdenum cofactor biosynthesis II (eukaryotes),
phenylalanine degradation III,
alanine biosynthesis III,
IAA biosynthesis I,
alanine biosynthesis II,
tRNA charging,
molybdenum cofactor biosynthesis,
4-aminobutyrate degradation IV,
alanine degradation II (to D-lactate),
indole-3-acetyl-amino acid biosynthesis,
glutamate degradation IV 		1 0.31 -0.31 C0055
28 C0164 MST_1596.8 - - - 0.87 0.47 -0.43
29 C0165 MST_1688.6 - - - 0.85 0.46 -0.44
30 C0160 MST_1509.5 - - - 0.8 0.48 -0.46
31 C0023 1,6-Anhydro-β-glucose 1,6-Anhydro-β-D-glucose Levoglucosan - 0.76 0.46 -0.46 C0023
32 C0163 MST_1589.2 - - - 0.75 0.46 -0.45
33 C0118 Hyperoside - Quercetin-3-glucoside quercetin glucoside biosynthesis (Arabidopsis),
rutin biosynthesis 		-0.71 0.46 -0.44 C0118
34 C0231 Serine D,L-Serine D-Serine; L-Serine sphingolipid biosynthesis (plants),
folate polyglutamylation,
tryptophan biosynthesis,
phospholipid biosynthesis II,
homocysteine and cysteine interconversion,
photorespiration,
seleno-amino acid biosynthesis,
glycine biosynthesis,
tRNA charging,
serine racemization,
phosphatidylethanolamine biosynthesis I,
serine biosynthesis,
choline biosynthesis I,
cysteine biosynthesis I,
folate transformations II 		0.71 0.32 -0.33 C0231
35 C0161 MST_1566.3 - - - 0.69 0.47 -0.44
36 C0115 Homoserine D,L-Homoserine Homoserine homoserine biosynthesis,
threonine biosynthesis from homoserine,
methionine biosynthesis II 		0.67 0.31 -0.32 C0115
37 C0116 Hydroxylamine - Hydroxylamine - -0.62 0.48 -0.45 C0116
38 C0254 Threonine D,L-Threonine L-Threonine isoleucine biosynthesis I (from threonine),
glycine biosynthesis,
threonine biosynthesis from homoserine,
tRNA charging 		0.61 0.3 -0.32 C0254
39 C0194 Phenylalanine D,L-Phenylalanine L-Phenylalanine suberin biosynthesis,
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
indole-3-acetyl-amino acid biosynthesis,
phenylalanine degradation III,
jasmonoyl-amino acid conjugates biosynthesis I,
trans-cinnamoyl-CoA biosynthesis,
phenylethanol biosynthesis,
phenylalanine biosynthesis II,
tRNA charging,
IAA degradation V,
glucosinolate biosynthesis from phenylalanine,
phenylpropanoid biosynthesis, initial reactions 		0.59 0.33 -0.31 C0194
40 C0102 Glutamine D,L-Glutamine L-Glutamine ammonia assimilation cycle II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
purine nucleotides de novo biosynthesis II,
tetrahydrofolate biosynthesis II,
NAD biosynthesis I (from aspartate),
nitrate reduction II (assimilatory),
5-aminoimidazole ribonucleotide biosynthesis I,
citrulline biosynthesis,
pyrimidine ribonucleotides interconversion,
histidine biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
pyridoxal 5'-phosphate biosynthesis II,
arginine biosynthesis I,
UDP-N-acetyl-D-glucosamine biosynthesis II,
pyridine nucleotide cycling (plants),
glutamate biosynthesis IV,
glutamine biosynthesis III,
glutamate biosynthesis V,
asparagine biosynthesis III (tRNA-dependent),
tryptophan biosynthesis,
L-glutamine biosynthesis II (tRNA-dependent),
uridine-5'-phosphate biosynthesis,
tRNA charging,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
asparagine biosynthesis I 		0.59 0.32 -0.31 C0102