C0058 : Arginine
Query Information
Cytoscape Web will replace the contents of this div with your graph.
ID C0058
Compound name Arginine
External link   http://pmn.plantcyc.org/ARA/NEW-IMAGE?type=COMPOUND&object=ARG
Pathway Information arginine degradation VI (arginase 2 pathway),
arginine degradation I (arginase pathway),
arginine biosynthesis I,
putrescine biosynthesis II,
nitric oxide biosynthesis I (in plants),
citrulline biosynthesis,
putrescine biosynthesis I,
tRNA charging,
arginine biosynthesis II (acetyl cycle),
citrulline-nitric oxide cycle,
urea cycle,
L-Ndelta-acetylornithine biosynthesis
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G68110 ENTH/ANTH/VHS superfamily protein 0.73 0.35 -0.32
2 AT2G21630 Sec23/Sec24 protein transport family protein 0.68 0.33 -0.33
3 AT1G71770 poly(A)-binding protein 5 poly(A)-binding protein 5 -0.67 0.31 -0.33
4 AT5G18600 Thioredoxin superfamily protein 0.65 0.31 -0.31
5 AT3G07610 Transcription factor jumonji (jmjC) domain-containing
protein		 increase in bonsai methylation 1 -0.63 0.32 -0.32
6 AT1G27790 transposable element gene 0.62 0.31 -0.31
7 AT1G77680 Ribonuclease II/R family protein 0.61 0.31 -0.33
8 AT4G26680 Tetratricopeptide repeat (TPR)-like superfamily protein 0.61 0.32 -0.35
9 AT5G11940 Subtilase family protein -0.6 0.34 -0.34
10 AT4G10750 Phosphoenolpyruvate carboxylase family protein -0.6 0.3 -0.32
11 AT3G27570 Sucrase/ferredoxin-like family protein -0.59 0.32 -0.33
12 AT2G36750 UDP-glucosyl transferase 73C1 UDP-glucosyl transferase 73C1 -0.59 0.32 -0.32
13 AT4G21800 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 quatre-quart2 -0.59 0.33 -0.29
14 AT1G15950 cinnamoyl coa reductase 1 ATCCR1, cinnamoyl coa reductase 1,
IRREGULAR XYLEM 4		 -0.59 0.34 -0.32
15 AT2G42940 Predicted AT-hook DNA-binding family protein -0.59 0.31 -0.31
16 AT3G49130 SWAP (Suppressor-of-White-APricot)/surp RNA-binding
domain-containing protein		 -0.58 0.33 -0.32
17 AT1G67360 Rubber elongation factor protein (REF) -0.58 0.32 -0.34
18 AT2G16690 transposable element gene 0.58 0.31 -0.32
19 AT1G78810 unknown protein; Has 75 Blast hits to 52 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2;
Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 0.58 0.33 -0.31
20 AT5G11740 arabinogalactan protein 15 arabinogalactan protein 15,
ATAGP15		 -0.57 0.31 -0.34
21 AT1G18180 Protein of unknown function (DUF1295) -0.57 0.33 -0.33
22 AT1G16040 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI
anchor biosynthetic process; LOCATED IN: integral to
membrane, endoplasmic reticulum membrane; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F
(InterPro:IPR009580); Has 280 Blast hits to 280 proteins in
133 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi
- 111; Plants - 44; Viruses - 0; Other Eukaryotes - 12
(source: NCBI BLink).		 -0.56 0.31 -0.32
23 AT5G05700 arginine-tRNA protein transferase 1 ATATE1, arginine-tRNA protein
transferase 1, DELAYED LEAF
SENESCENCE 1		 0.56 0.32 -0.34
24 AT2G21110 Disease resistance-responsive (dirigent-like protein)
family protein		 0.56 0.32 -0.33
25 AT1G02070 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits
to 98 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.56 0.32 -0.32
26 AT1G32900 UDP-Glycosyltransferase superfamily protein granule bound starch synthase 1 -0.56 0.3 -0.32
27 AT3G12950 Trypsin family protein 0.55 0.31 -0.31
28 AT5G27080 Transducin family protein / WD-40 repeat family protein AtCDC20.3, cell division cycle
20.3		 0.55 0.32 -0.33
29 AT2G28440 proline-rich family protein 0.55 0.32 -0.31
30 AT1G06450 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.55 0.31 -0.32
31 AT4G22030 F-box family protein with a domain of unknown function
(DUF295)		 0.54 0.32 -0.31
32 AT3G53450 Putative lysine decarboxylase family protein LONELY GUY 4 -0.54 0.32 -0.32
33 AT3G02330 Pentatricopeptide repeat (PPR) superfamily protein 0.54 0.35 -0.32
34 AT3G02630 Plant stearoyl-acyl-carrier-protein desaturase family
protein		 -0.53 0.31 -0.31
35 AT5G56160 Sec14p-like phosphatidylinositol transfer family protein 0.53 0.31 -0.31
36 AT3G58060 Cation efflux family protein -0.53 0.31 -0.31
37 AT5G33390 glycine-rich protein 0.53 0.31 -0.34
38 AT4G29100 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.53 0.33 -0.3
39 AT5G62120 response regulator 23 response regulator 23, response
regulator 23		 0.52 0.31 -0.29
40 AT5G48750 Cytochrome b561/ferric reductase transmembrane with DOMON
related domain		 -0.51 0.34 -0.3
41 AT3G05860 MADS-box transcription factor family protein -0.51 0.31 -0.3
42 AT3G42900 transposable element gene -0.51 0.31 -0.32
43 AT2G16750 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 0.51 0.31 -0.32
44 AT5G62070 IQ-domain 23 IQ-domain 23 -0.51 0.32 -0.33
45 AT1G77080 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 27, FLOWERING LOCUS
M, MADS AFFECTING FLOWERING 1		 -0.51 0.33 -0.32
46 AT1G67820 Protein phosphatase 2C family protein -0.51 0.32 -0.31
47 AT2G25380 pseudogene of zinc finger protein-related 0.51 0.33 -0.32
48 AT2G26490 Transducin/WD40 repeat-like superfamily protein -0.5 0.33 -0.33
49 AT1G74420 fucosyltransferase 3 ATFUT3, fucosyltransferase 3 -0.5 0.34 -0.31
50 AT3G54810 Plant-specific GATA-type zinc finger transcription factor
family protein		 BLUE MICROPYLAR END 3, BLUE
MICROPYLAR END 3-ZINC FINGER, GATA
TRANSCRIPTION FACTOR 8		 -0.5 0.31 -0.32
51 AT4G24890 purple acid phosphatase 24 ARABIDOPSIS THALIANA PURPLE ACID
PHOSPHATASE 24, purple acid
phosphatase 24		 -0.5 0.29 -0.31
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
52 C0058 Arginine D,L-Arginine L-Arginine arginine degradation VI (arginase 2 pathway),
arginine degradation I (arginase pathway),
arginine biosynthesis I,
putrescine biosynthesis II,
nitric oxide biosynthesis I (in plants),
citrulline biosynthesis,
putrescine biosynthesis I,
tRNA charging,
arginine biosynthesis II (acetyl cycle),
citrulline-nitric oxide cycle,
urea cycle,
L-Ndelta-acetylornithine biosynthesis 		1 0.3 -0.33 C0058
53 C0069 Citrulline - Citrulline citrulline-nitric oxide cycle,
citrulline biosynthesis,
nitric oxide biosynthesis I (in plants),
urea cycle,
citrulline degradation,
arginine biosynthesis II (acetyl cycle),
arginine biosynthesis I 		0.89 0.32 -0.33 C0069
54 C0006 β-Homothreonine L-β-Homothreonine - - 0.88 0.43 -0.45
55 C0162 MST_1588.3 - - - 0.81 0.46 -0.41
56 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.78 0.44 -0.45 C0262
57 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		0.78 0.46 -0.43 C0088
58 C0159 MST_1505.6 - - - 0.77 0.43 -0.45
59 C0066 Choline - Choline choline biosynthesis III,
phosphatidylcholine biosynthesis I,
choline biosynthesis I,
glycine betaine biosynthesis III (plants),
choline biosynthesis II,
sinapate ester biosynthesis,
phospholipases 		0.77 0.32 -0.3 C0066
60 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		0.77 0.46 -0.44 C0261
61 C0113 Histidinol - Histidinol histidine biosynthesis 0.76 0.32 -0.31 C0113
62 C0059 Arginine amide - - - 0.74 0.49 -0.43
63 C0028 3-Aminopiperidin-2-one (R,S)-3-Aminopiperidin-2-one - - 0.72 0.3 -0.3
64 C0140 Lysine L-Lysine L-Lysine lysine degradation II,
tRNA charging,
lysine biosynthesis VI,
lysine degradation I 		0.72 0.3 -0.31 C0140
65 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) 0.71 0.41 -0.41 C0075
66 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.7 0.43 -0.42 C0234
67 C0218 Pyridoxamine phosphate Pyridoxamine-5'-phosphate Pyridoxamine-5'-phosphate pyridoxal 5'-phosphate salvage pathway 0.7 0.31 -0.33 C0218
68 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		0.69 0.42 -0.43 C0091
69 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.67 0.44 -0.45 C0030
70 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		0.67 0.49 -0.46 C0087
71 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis 0.67 0.46 -0.44
72 C0015 p-Coumaric acid - 4-Coumarate scopoletin biosynthesis,
free phenylpropanoid acid biosynthesis,
phenylpropanoid biosynthesis,
simple coumarins biosynthesis,
4-hydroxybenzoate biosynthesis V,
suberin biosynthesis,
phenylpropanoid biosynthesis, initial reactions,
flavonoid biosynthesis 		0.65 0.41 -0.44 C0015
73 C0112 Histidine L-Histidine L-Histidine tRNA charging,
histidine biosynthesis 		0.65 0.29 -0.32 C0112
74 C0213 PR_MST_2410.2 - - - -0.64 0.42 -0.46
75 C0144 Maltose D-Maltose α-Maltose starch degradation II -0.64 0.44 -0.45 C0144
76 C0168 MST_2023.2 - - - -0.63 0.42 -0.48
77 C0061 Aspartic acid L-Aspartic acid L-Aspartate purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging,
indole-3-acetyl-amino acid biosynthesis,
citrulline-nitric oxide cycle,
asparagine degradation I,
cyanide detoxification II,
asparagine biosynthesis I,
asparagine biosynthesis III (tRNA-dependent),
arginine biosynthesis I,
inosine-5'-phosphate biosynthesis II,
uridine-5'-phosphate biosynthesis,
aspartate biosynthesis,
homoserine biosynthesis,
lysine biosynthesis VI,
aspartate degradation II,
urea cycle,
purine nucleotides de novo biosynthesis II,
NAD biosynthesis I (from aspartate),
IAA degradation IV,
arginine biosynthesis II (acetyl cycle) 		0.62 0.34 -0.32 C0061
78 C0013 N2-Acetyl-Ornithine N2-Acetyl-L-ornithine N-acetyl-L-ornithine arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		0.59 0.32 -0.29 C0013
79 C0191 Ornithine D,L-Ornithine L-Ornithine arginine degradation I (arginase pathway),
urea cycle,
ornithine biosynthesis,
proline biosynthesis III,
arginine degradation VI (arginase 2 pathway),
arginine biosynthesis II (acetyl cycle),
citrulline biosynthesis,
L-Ndelta-acetylornithine biosynthesis,
arginine biosynthesis I,
citrulline degradation 		0.58 0.31 -0.31 C0191
80 C0139 Linoleic acid n-cis,cis-9,12-Octadecadienoic acid Linoleate poly-hydroxy fatty acids biosynthesis,
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
crepenynic acid biosynthesis 		-0.55 0.31 -0.31 C0139
81 C0060 Asparagine D,L-Asparagine L-Asparagine asparagine degradation I,
asparagine biosynthesis III (tRNA-dependent),
asparagine biosynthesis I,
tRNA charging,
cyanide detoxification II 		0.55 0.31 -0.32 C0060
82 C0062 Betain - - - 0.54 0.31 -0.3
83 C0101 Glutamic acid D,L-Glutamic acid L-Glutamate; D-Glutamate tyrosine biosynthesis I,
serine biosynthesis,
tyrosine degradation I,
uridine-5'-phosphate biosynthesis,
proline biosynthesis III,
glutamate biosynthesis V,
glycine biosynthesis,
lysine biosynthesis VI,
leucine biosynthesis,
UDP-N-acetyl-D-glucosamine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle (plant pathway),
L-Ndelta-acetylornithine biosynthesis,
tryptophan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
4-hydroxyphenylpyruvate biosynthesis,
proline degradation II,
photorespiration,
5-aminoimidazole ribonucleotide biosynthesis I,
folate polyglutamylation,
ammonia assimilation cycle II,
arginine degradation VI (arginase 2 pathway),
asparagine biosynthesis III (tRNA-dependent),
tetrahydrofolate biosynthesis II,
glutamine biosynthesis III,
valine degradation I,
glucosinolate biosynthesis from dihomomethionine,
phenylalanine biosynthesis II,
citrulline biosynthesis,
gamma-glutamyl cycle,
indole-3-acetyl-amino acid biosynthesis,
purine nucleotides de novo biosynthesis II,
IAA biosynthesis I,
NAD biosynthesis I (from aspartate),
alanine biosynthesis II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
glucosinolate biosynthesis from homomethionine,
phenylalanine degradation III,
ornithine biosynthesis,
glutathione-mediated detoxification II,
pyrimidine ribonucleotides interconversion,
indole glucosinolate breakdown (active in intact plant cell),
aspartate degradation II,
glucosinolate biosynthesis from trihomomethionine,
glucosinolate biosynthesis from tetrahomomethionine,
L-glutamine biosynthesis II (tRNA-dependent),
camalexin biosynthesis,
glutathione biosynthesis,
aspartate biosynthesis,
leucine degradation I,
glutathione degradation,
pyridine nucleotide cycling (plants),
glutamate degradation I,
valine biosynthesis,
glucosinolate biosynthesis from tryptophan,
arginine biosynthesis II (acetyl cycle),
isoleucine biosynthesis I (from threonine),
arginine biosynthesis I,
arginine degradation I (arginase pathway),
glucosinolate biosynthesis from hexahomomethionine,
tetrapyrrole biosynthesis I,
alanine degradation III,
pyridoxal 5'-phosphate biosynthesis II,
glutamate biosynthesis IV,
glutamate degradation IV,
asparagine biosynthesis I,
histidine biosynthesis,
lysine degradation II,
pantothenate biosynthesis,
isoleucine degradation I,
folate polyglutamylation II,
glutamine biosynthesis I,
glucosinolate biosynthesis from phenylalanine,
tyrosine biosynthesis II,
nitrate reduction II (assimilatory),
alanine degradation II (to D-lactate) 		0.52 0.32 -0.31 C0101