C0101 : Glutamic acid
Query Information
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ID C0101
Compound name Glutamic acid
External link   http://pmn.plantcyc.org/ARA/NEW-IMAGE?type=COMPOUND&object=GLT
Pathway Information tyrosine biosynthesis I,
serine biosynthesis,
tyrosine degradation I,
uridine-5'-phosphate biosynthesis,
proline biosynthesis III,
glutamate biosynthesis V,
glycine biosynthesis,
lysine biosynthesis VI,
leucine biosynthesis,
UDP-N-acetyl-D-glucosamine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle (plant pathway),
L-Ndelta-acetylornithine biosynthesis,
tryptophan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
4-hydroxyphenylpyruvate biosynthesis,
proline degradation II,
photorespiration,
5-aminoimidazole ribonucleotide biosynthesis I,
folate polyglutamylation,
ammonia assimilation cycle II,
arginine degradation VI (arginase 2 pathway),
asparagine biosynthesis III (tRNA-dependent),
tetrahydrofolate biosynthesis II,
glutamine biosynthesis III,
valine degradation I,
glucosinolate biosynthesis from dihomomethionine,
phenylalanine biosynthesis II,
citrulline biosynthesis,
gamma-glutamyl cycle,
indole-3-acetyl-amino acid biosynthesis,
purine nucleotides de novo biosynthesis II,
IAA biosynthesis I,
NAD biosynthesis I (from aspartate),
alanine biosynthesis II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
glucosinolate biosynthesis from homomethionine,
phenylalanine degradation III,
ornithine biosynthesis,
glutathione-mediated detoxification II,
pyrimidine ribonucleotides interconversion,
indole glucosinolate breakdown (active in intact plant cell),
aspartate degradation II,
glucosinolate biosynthesis from trihomomethionine,
glucosinolate biosynthesis from tetrahomomethionine,
L-glutamine biosynthesis II (tRNA-dependent),
camalexin biosynthesis,
glutathione biosynthesis,
aspartate biosynthesis,
leucine degradation I,
glutathione degradation,
pyridine nucleotide cycling (plants),
glutamate degradation I,
valine biosynthesis,
glucosinolate biosynthesis from tryptophan,
arginine biosynthesis II (acetyl cycle),
isoleucine biosynthesis I (from threonine),
arginine biosynthesis I,
arginine degradation I (arginase pathway),
glucosinolate biosynthesis from hexahomomethionine,
tetrapyrrole biosynthesis I,
alanine degradation III,
pyridoxal 5'-phosphate biosynthesis II,
glutamate biosynthesis IV,
glutamate degradation IV,
asparagine biosynthesis I,
histidine biosynthesis,
lysine degradation II,
pantothenate biosynthesis,
isoleucine degradation I,
folate polyglutamylation II,
glutamine biosynthesis I,
glucosinolate biosynthesis from phenylalanine,
tyrosine biosynthesis II,
nitrate reduction II (assimilatory),
alanine degradation II (to D-lactate)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G44970 Protein with RNI-like/FBD-like domains 0.66 0.31 -0.31
2 AT5G04200 metacaspase 9 metacaspase 9, metacaspase 2f,
metacaspase 9, metacaspase 2f		 -0.66 0.3 -0.31
3 AT4G21500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G05018.1); Has 20 Blast
hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 -0.66 0.35 -0.3
4 AT4G07780 transposable element gene -0.63 0.31 -0.35
5 AT5G16570 glutamine synthetase 1;4 glutamine synthetase 1;4 -0.61 0.31 -0.31
6 AT1G53440 Leucine-rich repeat transmembrane protein kinase 0.61 0.31 -0.3
7 AT4G13190 Protein kinase superfamily protein -0.61 0.33 -0.32
8 AT2G14910 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G14970.1); Has 605 Blast hits to 425 proteins in
102 species: Archae - 0; Bacteria - 300; Metazoa - 25;
Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 191
(source: NCBI BLink).		 0.59 0.33 -0.3
9 AT1G53490 RING/U-box superfamily protein -0.59 0.34 -0.31
10 AT2G19580 tetraspanin2 tetraspanin2 -0.58 0.32 -0.32
11 AT1G27590 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana
protein match is: phosphatidylinositol 3- and 4-kinase
family protein (TAIR:AT1G27570.1); Has 109 Blast hits to
109 proteins in 38 species: Archae - 0; Bacteria - 0;
Metazoa - 65; Fungi - 4; Plants - 38; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 0.58 0.31 -0.31
12 AT1G55410 pseudogene, CHP-rich zinc finger protein, putative, similar
to putative CHP-rich zinc finger protein GB:CAB77744
GI:7268217 from (Arabidopsis thaliana)		 0.58 0.32 -0.32
13 AT5G28490 Protein of unknown function (DUF640) LIGHT-DEPENDENT SHORT HYPOCOTYLS
1, ORGAN BOUNDARY 2		 -0.58 0.33 -0.32
14 AT4G19350 embryo defective 3006 embryo defective 3006 0.58 0.3 -0.3
15 AT2G22960 alpha/beta-Hydrolases superfamily protein -0.57 0.31 -0.33
16 AT5G46010 Homeodomain-like superfamily protein -0.57 0.3 -0.3
17 AT1G52770 Phototropic-responsive NPH3 family protein 0.56 0.33 -0.32
18 AT1G73120 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to oxidative stress; EXPRESSED IN:
root, cultured cell; Has 36 Blast hits to 36 proteins in 8
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.56 0.32 -0.31
19 AT5G40560 DegP protease 13 DegP protease 13 -0.56 0.33 -0.31
20 AT5G28040 DNA-binding storekeeper protein-related transcriptional
regulator		 -0.56 0.33 -0.31
21 AT3G31300 transposable element gene 0.56 0.33 -0.29
22 AT3G24540 Protein kinase superfamily protein proline-rich extensin-like
receptor kinase 3, proline-rich
extensin-like receptor kinase 3		 0.55 0.3 -0.3
23 AT5G20770 transposable element gene 0.55 0.31 -0.32
24 AT4G03810 transposable element gene -0.55 0.3 -0.31
25 AT1G10990 unknown protein; Has 4 Blast hits to 4 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.55 0.32 -0.33
26 AT2G37730 Protein of unknown function (DUF604) 0.55 0.33 -0.32
27 AT1G51450 TRAUCO ARABIDOPSIS Ash2 RELATIVE, TRAUCO -0.55 0.31 -0.3
28 AT4G22030 F-box family protein with a domain of unknown function
(DUF295)		 0.54 0.31 -0.3
29 AT4G20370 PEBP (phosphatidylethanolamine-binding protein) family
protein		 TWIN SISTER OF FT 0.54 0.31 -0.3
30 AT1G58170 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.54 0.3 -0.31
31 AT3G47740 ABC2 homolog 2 ATP-binding cassette A3, A.
THALIANA ABC2 HOMOLOG 2, ABC2
homolog 2		 0.54 0.31 -0.31
32 AT2G18880 vernalization5/VIN3-like vernalization5/VIN3-like 2,
VIN3-like 3		 -0.53 0.32 -0.32
33 AT5G03200 RING/U-box superfamily protein -0.53 0.31 -0.33
34 AT1G70500 Pectin lyase-like superfamily protein -0.53 0.32 -0.33
35 AT2G07300 transposable element gene -0.52 0.3 -0.32
36 AT5G64210 alternative oxidase 2 alternative oxidase 2 -0.52 0.31 -0.31
37 AT5G10140 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 25, FLC, FLOWERING
LOCUS C, FLOWERING LOCUS F		 -0.51 0.3 -0.33
38 AT3G50730 Protein kinase superfamily protein 0.51 0.3 -0.33
39 AT2G23830 PapD-like superfamily protein 0.51 0.33 -0.34
40 AT2G17870 cold shock domain protein 3 ARABIDOPSIS COLD SHOCK DOMAIN
PROTEIN 3, cold shock domain
protein 3		 -0.51 0.32 -0.31
41 AT2G32750 Exostosin family protein -0.51 0.33 -0.31
42 AT3G10180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.51 0.33 -0.31
43 AT4G31060 Integrase-type DNA-binding superfamily protein 0.5 0.31 -0.32
44 AT3G29080 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.5 0.31 -0.31
45 AT3G12730 Homeodomain-like superfamily protein 0.49 0.3 -0.32
46 AT4G03940 unknown protein; Has 8 Blast hits to 8 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink).		 0.49 0.31 -0.32
47 AT5G62160 zinc transporter 12 precursor zinc transporter 12 precursor,
zinc transporter 12 precursor		 0.49 0.33 -0.32
48 AT1G53165 Protein kinase superfamily protein ATMAP4K ALPHA1 0.49 0.32 -0.29
49 AT2G46310 cytokinin response factor 5 cytokinin response factor 5 0.49 0.32 -0.33
50 AT3G29570 unknown protein; Has 271 Blast hits to 164 proteins in 59
species: Archae - 0; Bacteria - 19; Metazoa - 88; Fungi -
42; Plants - 45; Viruses - 9; Other Eukaryotes - 68
(source: NCBI BLink).		 0.49 0.33 -0.31
51 AT4G34660 SH3 domain-containing protein -0.48 0.32 -0.3
52 AT1G37140 MEI2 C-terminal RRM only like 1 MEI2 C-terminal RRM only like 1 -0.48 0.32 -0.3
53 AT3G55670 CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596),
FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana
protein match is: F-box/RNI-like/FBD-like
domains-containing protein (TAIR:AT3G52680.2); Has 400
Blast hits to 249 proteins in 3 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 400; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.48 0.31 -0.31
54 AT1G71230 COP9-signalosome 5B AJH2, CSN5, COP9-signalosome 5B -0.47 0.31 -0.32
55 AT5G43760 3-ketoacyl-CoA synthase 20 3-ketoacyl-CoA synthase 20 -0.46 0.32 -0.31
56 AT5G65850 F-box and associated interaction domains-containing protein -0.46 0.32 -0.31
57 AT5G40180 BEST Arabidopsis thaliana protein match is: TRICHOME
BIREFRINGENCE-LIKE 22 (TAIR:AT3G28150.1); Has 117 Blast
hits to 117 proteins in 14 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.46 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
58 C0101 Glutamic acid D,L-Glutamic acid L-Glutamate; D-Glutamate tyrosine biosynthesis I,
serine biosynthesis,
tyrosine degradation I,
uridine-5'-phosphate biosynthesis,
proline biosynthesis III,
glutamate biosynthesis V,
glycine biosynthesis,
lysine biosynthesis VI,
leucine biosynthesis,
UDP-N-acetyl-D-glucosamine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle (plant pathway),
L-Ndelta-acetylornithine biosynthesis,
tryptophan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
4-hydroxyphenylpyruvate biosynthesis,
proline degradation II,
photorespiration,
5-aminoimidazole ribonucleotide biosynthesis I,
folate polyglutamylation,
ammonia assimilation cycle II,
arginine degradation VI (arginase 2 pathway),
asparagine biosynthesis III (tRNA-dependent),
tetrahydrofolate biosynthesis II,
glutamine biosynthesis III,
valine degradation I,
glucosinolate biosynthesis from dihomomethionine,
phenylalanine biosynthesis II,
citrulline biosynthesis,
gamma-glutamyl cycle,
indole-3-acetyl-amino acid biosynthesis,
purine nucleotides de novo biosynthesis II,
IAA biosynthesis I,
NAD biosynthesis I (from aspartate),
alanine biosynthesis II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
glucosinolate biosynthesis from homomethionine,
phenylalanine degradation III,
ornithine biosynthesis,
glutathione-mediated detoxification II,
pyrimidine ribonucleotides interconversion,
indole glucosinolate breakdown (active in intact plant cell),
aspartate degradation II,
glucosinolate biosynthesis from trihomomethionine,
glucosinolate biosynthesis from tetrahomomethionine,
L-glutamine biosynthesis II (tRNA-dependent),
camalexin biosynthesis,
glutathione biosynthesis,
aspartate biosynthesis,
leucine degradation I,
glutathione degradation,
pyridine nucleotide cycling (plants),
glutamate degradation I,
valine biosynthesis,
glucosinolate biosynthesis from tryptophan,
arginine biosynthesis II (acetyl cycle),
isoleucine biosynthesis I (from threonine),
arginine biosynthesis I,
arginine degradation I (arginase pathway),
glucosinolate biosynthesis from hexahomomethionine,
tetrapyrrole biosynthesis I,
alanine degradation III,
pyridoxal 5'-phosphate biosynthesis II,
glutamate biosynthesis IV,
glutamate degradation IV,
asparagine biosynthesis I,
histidine biosynthesis,
lysine degradation II,
pantothenate biosynthesis,
isoleucine degradation I,
folate polyglutamylation II,
glutamine biosynthesis I,
glucosinolate biosynthesis from phenylalanine,
tyrosine biosynthesis II,
nitrate reduction II (assimilatory),
alanine degradation II (to D-lactate) 		1 0.32 -0.31 C0101
59 C0169 MST_2105.7 - - - 0.83 0.44 -0.45
60 C0180 MST_2539.9 - - - 0.82 0.45 -0.44
61 C0060 Asparagine D,L-Asparagine L-Asparagine asparagine degradation I,
asparagine biosynthesis III (tRNA-dependent),
asparagine biosynthesis I,
tRNA charging,
cyanide detoxification II 		0.78 0.31 -0.31 C0060
62 C0176 MST_2406.9 - - - 0.71 0.46 -0.46
63 C0159 MST_1505.6 - - - 0.7 0.45 -0.48
64 C0079 Digalactosyldiacylglycerol-34:5 - Digalactosyldiacylglycerol-34:5 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.68 0.45 -0.43 C0079
65 C0161 MST_1566.3 - - - 0.67 0.45 -0.46
66 C0028 3-Aminopiperidin-2-one (R,S)-3-Aminopiperidin-2-one - - 0.64 0.32 -0.32
67 C0006 β-Homothreonine L-β-Homothreonine - - 0.63 0.45 -0.44
68 C0080 Digalactosyldiacylglycerol-34:6 - Digalactosyldiacylglycerol-34:6 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.62 0.46 -0.46 C0080
69 C0069 Citrulline - Citrulline citrulline-nitric oxide cycle,
citrulline biosynthesis,
nitric oxide biosynthesis I (in plants),
urea cycle,
citrulline degradation,
arginine biosynthesis II (acetyl cycle),
arginine biosynthesis I 		0.56 0.31 -0.3 C0069
70 C0194 Phenylalanine D,L-Phenylalanine L-Phenylalanine suberin biosynthesis,
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
indole-3-acetyl-amino acid biosynthesis,
phenylalanine degradation III,
jasmonoyl-amino acid conjugates biosynthesis I,
trans-cinnamoyl-CoA biosynthesis,
phenylethanol biosynthesis,
phenylalanine biosynthesis II,
tRNA charging,
IAA degradation V,
glucosinolate biosynthesis from phenylalanine,
phenylpropanoid biosynthesis, initial reactions 		0.55 0.31 -0.32 C0194
71 C0058 Arginine D,L-Arginine L-Arginine arginine degradation VI (arginase 2 pathway),
arginine degradation I (arginase pathway),
arginine biosynthesis I,
putrescine biosynthesis II,
nitric oxide biosynthesis I (in plants),
citrulline biosynthesis,
putrescine biosynthesis I,
tRNA charging,
arginine biosynthesis II (acetyl cycle),
citrulline-nitric oxide cycle,
urea cycle,
L-Ndelta-acetylornithine biosynthesis 		0.52 0.3 -0.32 C0058