C0148 : Methionine
Query Information
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ID C0148
Compound name Methionine
External link   http://pmn.plantcyc.org/ARA/NEW-IMAGE?type=COMPOUND&object=MET
Pathway Information thiamine biosynthesis II,
S-adenosyl-L-methionine biosynthesis,
S-adenosyl-L-methionine cycle II,
tRNA charging,
methionine degradation II,
ethylene biosynthesis I (plants),
methionine degradation I (to homocysteine),
S-methylmethionine cycle,
methionine salvage pathway,
methionine biosynthesis II,
folate transformations II,
homomethionine biosynthesis,
lipoate biosynthesis and incorporation I,
S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G20060 Ribosomal protein L4/L1 family -0.67 0.31 -0.32
2 ATMG00450 hypothetical protein ORF106B -0.62 0.32 -0.32
3 AT5G20390 Glycosyl hydrolase superfamily protein 0.61 0.31 -0.33
4 AT5G49010 DNA replication protein-related EMBRYO DEFECTIVE 2812, SYNTHETIC
LETHALITY WITH DPB11-1 5		 -0.6 0.31 -0.3
5 AT2G45640 SIN3 associated polypeptide P18 SIN3 ASSOCIATED POLYPEPTIDE 18,
SIN3 associated polypeptide P18		 -0.59 0.32 -0.31
6 AT4G37970 cinnamyl alcohol dehydrogenase 6 ATCAD6, cinnamyl alcohol
dehydrogenase 6		 0.59 0.31 -0.3
7 AT1G27450 adenine phosphoribosyl transferase 1 adenine phosphoribosyl transferase
1, ARABIDOPSIS THALIANA ADENINE
PHOSPHORIBOSYLTRANSFERASE 1		 -0.59 0.33 -0.32
8 AT1G22970 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G71150.1); Has 134 Blast hits
to 132 proteins in 48 species: Archae - 0; Bacteria - 0;
Metazoa - 66; Fungi - 10; Plants - 48; Viruses - 0; Other
Eukaryotes - 10 (source: NCBI BLink).		 -0.58 0.3 -0.33
9 AT2G39550 Prenyltransferase family protein GERANYLGERANYLTRANSFERASE-I BETA
SUBUNIT, GGB, PGGT-I		 -0.58 0.32 -0.32
10 AT5G51400 PLAC8 family protein -0.58 0.33 -0.31
11 AT1G17640 RNA-binding (RRM/RBD/RNP motifs) family protein -0.58 0.31 -0.32
12 AT3G47840 Tetratricopeptide repeat (TPR)-like superfamily protein -0.58 0.34 -0.33
13 AT2G45240 methionine aminopeptidase 1A methionine aminopeptidase 1A -0.58 0.32 -0.32
14 AT4G37670 N-acetyl-l-glutamate synthase 2 N-acetyl-l-glutamate synthase 2 -0.58 0.29 -0.3
15 AT3G28780 Protein of unknown function (DUF1216) 0.57 0.32 -0.31
16 AT5G02740 Ribosomal protein S24e family protein -0.57 0.3 -0.33
17 AT1G73290 serine carboxypeptidase-like 5 serine carboxypeptidase-like 5 -0.57 0.33 -0.33
18 AT3G28830 Protein of unknown function (DUF1216) 0.56 0.3 -0.32
19 AT1G17590 nuclear factor Y, subunit A8 nuclear factor Y, subunit A8 0.56 0.31 -0.3
20 AT5G67000 Integrase-type DNA-binding superfamily protein -0.56 0.33 -0.3
21 AT3G61900 SAUR-like auxin-responsive protein family 0.56 0.33 -0.34
22 AT5G39370 Curculin-like (mannose-binding) lectin family protein -0.56 0.3 -0.32
23 AT2G18450 succinate dehydrogenase 1-2 succinate dehydrogenase 1-2 -0.54 0.3 -0.32
24 AT4G08190 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.54 0.32 -0.33
25 AT2G27220 BEL1-like homeodomain 5 BEL1-like homeodomain 5 0.54 0.32 -0.3
26 AT5G51880 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.54 0.31 -0.32
27 AT1G31080 F-box family protein -0.54 0.33 -0.31
28 AT2G44050 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase /
lumazine synthase / riboflavin synthase		 COI1 SUPPRESSOR1, coronatine
insensitive1 suppressor		 -0.54 0.3 -0.31
29 AT3G11200 alfin-like 2 alfin-like 2 -0.53 0.32 -0.31
30 AT3G21210 zinc ion binding 0.53 0.33 -0.3
31 AT1G11250 syntaxin of plants 125 ATSYP125, syntaxin of plants 125 -0.53 0.33 -0.3
32 AT5G04380 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.53 0.33 -0.3
33 AT1G65340 cytochrome P450, family 96, subfamily A, polypeptide 3 cytochrome P450, family 96,
subfamily A, polypeptide 3		 -0.52 0.3 -0.32
34 AT4G20910 double-stranded RNA binding protein-related / DsRBD
protein-related		 CORYMBOSA 2, HUA ENHANCER 1 0.52 0.32 -0.31
35 AT4G26410 Uncharacterised conserved protein UCP022280 -0.52 0.35 -0.32
36 AT4G17510 ubiquitin C-terminal hydrolase 3 ubiquitin C-terminal hydrolase 3 -0.51 0.31 -0.28
37 AT3G58390 Eukaryotic release factor 1 (eRF1) family protein -0.51 0.32 -0.31
38 AT5G47340 alpha/beta-Hydrolases superfamily protein 0.51 0.32 -0.33
39 AT1G19580 gamma carbonic anhydrase 1 gamma carbonic anhydrase 1 -0.51 0.31 -0.32
40 AT4G00970 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 cysteine-rich RLK (RECEPTOR-like
protein kinase) 41		 0.5 0.31 -0.32
41 AT1G44414 unknown protein; Has 29 Blast hits to 29 proteins in 12
species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.5 0.32 -0.31
42 AT1G07690 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s:
Orthoreovirus membrane fusion p10 (InterPro:IPR009854);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G54950.1); Has 11 Blast hits to 11 proteins in 4
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink).		 -0.5 0.3 -0.3
43 AT1G44090 gibberellin 20-oxidase 5 ARABIDOPSIS THALIANA GIBBERELLIN
20-OXIDASE 5, gibberellin
20-oxidase 5		 0.49 0.31 -0.32
44 AT1G21320 nucleotide binding;nucleic acid binding -0.49 0.33 -0.31
45 AT1G70400 CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976);
BEST Arabidopsis thaliana protein match is: pre-mRNA
processing ribonucleoprotein binding region-containing
protein (TAIR:AT1G60170.1); Has 479 Blast hits to 479
proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa
- 125; Fungi - 138; Plants - 124; Viruses - 0; Other
Eukaryotes - 92 (source: NCBI BLink).		 -0.49 0.32 -0.32
46 AT2G17210 Tetratricopeptide repeat (TPR)-like superfamily protein 0.49 0.31 -0.31
47 AT2G38490 CBL-interacting protein kinase 22 CBL-interacting protein kinase 22,
SNF1-RELATED PROTEIN KINASE 3.19		 0.48 0.3 -0.32
48 AT5G40130 60S ribosomal protein L5 (RPL5C), pseudogene, 60S RIBOSOMAL
PROTEIN L5, Arabidopsis thaliana, SWISSPROT:RL5_ARATH;
blastp match of 70% identity and 7.9e-26 P-value to
GP|13359453|dbj|BAB33422.1||AB049724 putative
senescence-associated protein {Pisum sativum}		 0.48 0.31 -0.3
49 AT2G02140 low-molecular-weight cysteine-rich 72 low-molecular-weight cysteine-rich
72, PDF2.6		 0.48 0.33 -0.32
50 AT5G38330 low-molecular-weight cysteine-rich 80 low-molecular-weight cysteine-rich
80		 0.48 0.33 -0.31
51 AT1G64620 Dof-type zinc finger DNA-binding family protein 0.47 0.31 -0.31
52 AT5G52480 RNI-like superfamily protein 0.46 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
53 C0148 Methionine D,L-Methionine L-Methionine thiamine biosynthesis II,
S-adenosyl-L-methionine biosynthesis,
S-adenosyl-L-methionine cycle II,
tRNA charging,
methionine degradation II,
ethylene biosynthesis I (plants),
methionine degradation I (to homocysteine),
S-methylmethionine cycle,
methionine salvage pathway,
methionine biosynthesis II,
folate transformations II,
homomethionine biosynthesis,
lipoate biosynthesis and incorporation I,
S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation 		1 0.3 -0.33 C0148
54 C0016 S-Adenosylmethionine S-Adenosyl-L-methionine S-Adenosyl-L-methionine ethylene biosynthesis I (plants),
scopoletin biosynthesis,
quercetinsulphates biosynthesis,
siroheme biosynthesis,
gibberellin inactivation II (methylation),
suberin biosynthesis,
volatile benzenoid biosynthesis I (ester formation),
S-adenosyl-L-methionine cycle II,
methylhalides biosynthesis (plants),
S-methylmethionine cycle,
ubiquinol-9 biosynthesis (eukaryotic),
nicotianamine biosynthesis,
methionine biosynthesis II,
spermine biosynthesis,
choline biosynthesis II,
diphthamide biosynthesis,
homogalacturonan biosynthesis,
phosphatidylcholine biosynthesis II,
methylquercetin biosynthesis,
plastoquinol biosynthesis,
chlorophyllide a biosynthesis I,
ferulate and sinapate biosynthesis,
ubiquinol-10 biosynthesis (eukaryotic),
phenylpropanoid biosynthesis,
free phenylpropanoid acid biosynthesis,
seleno-amino acid detoxification and volatilization I,
plant sterol biosynthesis,
lipoate biosynthesis and incorporation I,
methyl indole-3-acetate interconversion,
cyclopropane and cyclopropene fatty acid biosynthesis,
spermidine biosynthesis I,
thiamine biosynthesis II,
methionine salvage pathway,
spermidine hydroxycinnamic acid conjugates biosynthesis,
simple coumarins biosynthesis,
phosphatidylcholine biosynthesis IV,
glutathione-mediated detoxification II,
S-adenosyl-L-methionine biosynthesis,
methionine degradation I (to homocysteine),
phosphatidylcholine biosynthesis III,
phylloquinol biosynthesis,
choline biosynthesis I,
biotin biosynthesis II,
vitamin E biosynthesis 		0.72 0.48 -0.46 C0016
55 C0160 MST_1509.5 - - - -0.66 0.46 -0.44
56 C0138 Linarin - - - -0.64 0.48 -0.45
57 C0023 1,6-Anhydro-β-glucose 1,6-Anhydro-β-D-glucose Levoglucosan - -0.63 0.46 -0.47 C0023
58 C0143 Maltitol - - starch degradation II 0.62 0.45 -0.47
59 C0116 Hydroxylamine - Hydroxylamine - 0.54 0.43 -0.47 C0116