C0194 : Phenylalanine
Query Information
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ID C0194
Compound name Phenylalanine
External link   http://pmn.plantcyc.org/ARA/NEW-IMAGE?type=COMPOUND&object=PHE
Pathway Information suberin biosynthesis,
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
indole-3-acetyl-amino acid biosynthesis,
phenylalanine degradation III,
jasmonoyl-amino acid conjugates biosynthesis I,
trans-cinnamoyl-CoA biosynthesis,
phenylethanol biosynthesis,
phenylalanine biosynthesis II,
tRNA charging,
IAA degradation V,
glucosinolate biosynthesis from phenylalanine,
phenylpropanoid biosynthesis, initial reactions
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G13330 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.72 0.3 -0.3
2 AT2G23330 transposable element gene 0.69 0.31 -0.32
3 AT1G68430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G66890.1); Has 35 Blast
hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.3 -0.33
4 AT1G80520 Sterile alpha motif (SAM) domain-containing protein -0.65 0.3 -0.32
5 AT3G10870 methyl esterase 17 ARABIDOPSIS THALIANA METHYL
ESTERASE 17, methyl esterase 17		 -0.62 0.31 -0.32
6 AT5G22400 Rho GTPase activating protein with PAK-box/P21-Rho-binding
domain		 -0.61 0.31 -0.32
7 AT5G05840 Protein of unknown function (DUF620) -0.61 0.31 -0.31
8 AT3G32940 RNA-binding KH domain-containing protein 0.6 0.31 -0.32
9 AT5G06610 Protein of unknown function (DUF620) -0.59 0.33 -0.3
10 AT3G49150 F-box/RNI-like superfamily protein 0.59 0.31 -0.32
11 AT5G63510 gamma carbonic anhydrase like 1 gamma carbonic anhydrase like 1 -0.59 0.32 -0.31
12 AT4G31770 debranching enzyme 1 ARABIDOPSIS THALIANA DEBRANCHING
ENZYME 1, debranching enzyme 1		 -0.59 0.29 -0.33
13 AT5G15600 SPIRAL1-like4 SPIRAL1-like4 -0.59 0.3 -0.33
14 AT5G24580 Heavy metal transport/detoxification superfamily protein -0.59 0.31 -0.33
15 ATMG00060 NADH dehydrogenase subunit 5C NADH DEHYDROGENASE SUBUNIT 5, NADH
DEHYDROGENASE SUBUNIT 5.3, NADH
dehydrogenase subunit 5C		 0.58 0.31 -0.31
16 AT1G58170 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.58 0.33 -0.3
17 AT1G67320 DNA primase, large subunit family EMBRYO DEFECTIVE 2813 -0.57 0.33 -0.32
18 AT5G23010 methylthioalkylmalate synthase 1 2-ISOPROPYLMALATE SYNTHASE 3,
methylthioalkylmalate synthase 1		 -0.56 0.3 -0.34
19 AT1G58160 Mannose-binding lectin superfamily protein -0.56 0.32 -0.29
20 AT5G49510 prefoldin 3 prefoldin 3 -0.56 0.32 -0.33
21 AT5G08170 porphyromonas-type peptidyl-arginine deiminase family
protein		 AGMATINE IMINOHYDROLASE, EMBRYO
DEFECTIVE 1873		 -0.56 0.3 -0.32
22 AT3G29370 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits
to 16 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 P1R3 -0.56 0.32 -0.32
23 AT5G48720 x-ray induced transcript 1 X-RAY INDUCED TRANSCRIPT, X-RAY
INDUCED TRANSCRIPT 1		 -0.54 0.32 -0.35
24 AT5G05890 UDP-Glycosyltransferase superfamily protein -0.54 0.32 -0.31
25 AT2G35540 DNAJ heat shock N-terminal domain-containing protein 0.54 0.32 -0.35
26 AT5G20370 serine-rich protein-related -0.53 0.34 -0.3
27 AT3G11600 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.53 0.3 -0.3
28 AT4G35540 zinc ion binding;transcription regulators 0.52 0.32 -0.31
29 AT5G38195 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.52 0.32 -0.3
30 AT3G46920 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 0.52 0.32 -0.31
31 ATMG01130 hypothetical protein ORF106F 0.52 0.31 -0.32
32 AT3G14670 unknown protein; Has 70811 Blast hits to 32163 proteins in
1591 species: Archae - 181; Bacteria - 15342; Metazoa -
24728; Fungi - 6779; Plants - 2998; Viruses - 578; Other
Eukaryotes - 20205 (source: NCBI BLink).		 0.51 0.31 -0.32
33 AT1G32480 isocitrate dehydrogenase IV isocitrate dehydrogenase IV 0.51 0.31 -0.3
34 AT2G18970 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.51 0.31 -0.31
35 AT3G03450 RGA-like 2 RGA-like 2 -0.51 0.31 -0.32
36 AT1G67730 beta-ketoacyl reductase 1 ATKCR1, beta-ketoacyl reductase 1,
YBR159		 -0.51 0.33 -0.3
37 AT4G01650 Polyketide cyclase / dehydrase and lipid transport protein -0.5 0.31 -0.3
38 AT2G04845 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.5 0.32 -0.32
39 AT5G52350 exocyst subunit exo70 family protein A3 exocyst subunit exo70 family
protein A3, exocyst subunit exo70
family protein A3		 -0.5 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
40 C0194 Phenylalanine D,L-Phenylalanine L-Phenylalanine suberin biosynthesis,
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
indole-3-acetyl-amino acid biosynthesis,
phenylalanine degradation III,
jasmonoyl-amino acid conjugates biosynthesis I,
trans-cinnamoyl-CoA biosynthesis,
phenylethanol biosynthesis,
phenylalanine biosynthesis II,
tRNA charging,
IAA degradation V,
glucosinolate biosynthesis from phenylalanine,
phenylpropanoid biosynthesis, initial reactions 		1 0.3 -0.3 C0194
41 C0163 MST_1589.2 - - - 0.98 0.43 -0.45
42 C0160 MST_1509.5 - - - 0.97 0.45 -0.48
43 C0161 MST_1566.3 - - - 0.96 0.43 -0.45
44 C0165 MST_1688.6 - - - 0.93 0.46 -0.46
45 C0023 1,6-Anhydro-β-glucose 1,6-Anhydro-β-D-glucose Levoglucosan - 0.9 0.45 -0.44 C0023
46 C0164 MST_1596.8 - - - 0.9 0.45 -0.48
47 C0074 Cystine L-Cystine L-Cystine protein precursor 0.79 0.46 -0.46 C0074
48 C0233 Sinapinic acid - cis-Sinapinate; Sinapate ferulate and sinapate biosynthesis,
sinapate ester biosynthesis,
free phenylpropanoid acid biosynthesis 		0.79 0.47 -0.45 C0233
49 C0060 Asparagine D,L-Asparagine L-Asparagine asparagine degradation I,
asparagine biosynthesis III (tRNA-dependent),
asparagine biosynthesis I,
tRNA charging,
cyanide detoxification II 		0.76 0.33 -0.31 C0060
50 C0258 Tryptophan amide (NH3+) D,L-Tryptophan amide (NH3+) - - 0.74 0.43 -0.45
51 C0089 Fortunellin - - - 0.72 0.51 -0.44
52 C0174 MST_2370.2 - - - 0.7 0.45 -0.44
53 C0116 Hydroxylamine - Hydroxylamine - -0.67 0.45 -0.48 C0116
54 C0102 Glutamine D,L-Glutamine L-Glutamine ammonia assimilation cycle II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
purine nucleotides de novo biosynthesis II,
tetrahydrofolate biosynthesis II,
NAD biosynthesis I (from aspartate),
nitrate reduction II (assimilatory),
5-aminoimidazole ribonucleotide biosynthesis I,
citrulline biosynthesis,
pyrimidine ribonucleotides interconversion,
histidine biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
pyridoxal 5'-phosphate biosynthesis II,
arginine biosynthesis I,
UDP-N-acetyl-D-glucosamine biosynthesis II,
pyridine nucleotide cycling (plants),
glutamate biosynthesis IV,
glutamine biosynthesis III,
glutamate biosynthesis V,
asparagine biosynthesis III (tRNA-dependent),
tryptophan biosynthesis,
L-glutamine biosynthesis II (tRNA-dependent),
uridine-5'-phosphate biosynthesis,
tRNA charging,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
asparagine biosynthesis I 		0.66 0.35 -0.32 C0102
55 C0212 PR_MST_2336.8 - - - 0.62 0.42 -0.42
56 C0055 Alanine D,L-Alanine D-Alanine; L-Alanine alanine degradation III,
beta-alanine biosynthesis II,
biotin biosynthesis II,
IAA biosynthesis II,
molybdenum cofactor biosynthesis II (eukaryotes),
phenylalanine degradation III,
alanine biosynthesis III,
IAA biosynthesis I,
alanine biosynthesis II,
tRNA charging,
molybdenum cofactor biosynthesis,
4-aminobutyrate degradation IV,
alanine degradation II (to D-lactate),
indole-3-acetyl-amino acid biosynthesis,
glutamate degradation IV 		0.59 0.32 -0.31 C0055
57 C0264 Valine D,L-Valine L-Valine jasmonoyl-amino acid conjugates biosynthesis I,
pantothenate biosynthesis,
IAA degradation V,
valine degradation I,
valine biosynthesis,
tRNA charging,
indole-3-acetyl-amino acid biosynthesis 		0.59 0.28 -0.33 C0264
58 C0219 Pyroglutamic acid (2R,2S)-Pyroglutamic acid 5-Oxoproline gamma-glutamyl cycle (plant pathway),
gamma-glutamyl cycle 		-0.56 0.29 -0.31 C0219
59 C0024 2-(Anilinomethyl)pyrrolidine (S)-(+)-2-(anilinomethyl)pyrrolidine - - 0.56 0.45 -0.46
60 C0101 Glutamic acid D,L-Glutamic acid L-Glutamate; D-Glutamate tyrosine biosynthesis I,
serine biosynthesis,
tyrosine degradation I,
uridine-5'-phosphate biosynthesis,
proline biosynthesis III,
glutamate biosynthesis V,
glycine biosynthesis,
lysine biosynthesis VI,
leucine biosynthesis,
UDP-N-acetyl-D-glucosamine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle (plant pathway),
L-Ndelta-acetylornithine biosynthesis,
tryptophan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
4-hydroxyphenylpyruvate biosynthesis,
proline degradation II,
photorespiration,
5-aminoimidazole ribonucleotide biosynthesis I,
folate polyglutamylation,
ammonia assimilation cycle II,
arginine degradation VI (arginase 2 pathway),
asparagine biosynthesis III (tRNA-dependent),
tetrahydrofolate biosynthesis II,
glutamine biosynthesis III,
valine degradation I,
glucosinolate biosynthesis from dihomomethionine,
phenylalanine biosynthesis II,
citrulline biosynthesis,
gamma-glutamyl cycle,
indole-3-acetyl-amino acid biosynthesis,
purine nucleotides de novo biosynthesis II,
IAA biosynthesis I,
NAD biosynthesis I (from aspartate),
alanine biosynthesis II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
glucosinolate biosynthesis from homomethionine,
phenylalanine degradation III,
ornithine biosynthesis,
glutathione-mediated detoxification II,
pyrimidine ribonucleotides interconversion,
indole glucosinolate breakdown (active in intact plant cell),
aspartate degradation II,
glucosinolate biosynthesis from trihomomethionine,
glucosinolate biosynthesis from tetrahomomethionine,
L-glutamine biosynthesis II (tRNA-dependent),
camalexin biosynthesis,
glutathione biosynthesis,
aspartate biosynthesis,
leucine degradation I,
glutathione degradation,
pyridine nucleotide cycling (plants),
glutamate degradation I,
valine biosynthesis,
glucosinolate biosynthesis from tryptophan,
arginine biosynthesis II (acetyl cycle),
isoleucine biosynthesis I (from threonine),
arginine biosynthesis I,
arginine degradation I (arginase pathway),
glucosinolate biosynthesis from hexahomomethionine,
tetrapyrrole biosynthesis I,
alanine degradation III,
pyridoxal 5'-phosphate biosynthesis II,
glutamate biosynthesis IV,
glutamate degradation IV,
asparagine biosynthesis I,
histidine biosynthesis,
lysine degradation II,
pantothenate biosynthesis,
isoleucine degradation I,
folate polyglutamylation II,
glutamine biosynthesis I,
glucosinolate biosynthesis from phenylalanine,
tyrosine biosynthesis II,
nitrate reduction II (assimilatory),
alanine degradation II (to D-lactate) 		0.55 0.31 -0.32 C0101
61 C0254 Threonine D,L-Threonine L-Threonine isoleucine biosynthesis I (from threonine),
glycine biosynthesis,
threonine biosynthesis from homoserine,
tRNA charging 		0.55 0.32 -0.33 C0254
62 C0231 Serine D,L-Serine D-Serine; L-Serine sphingolipid biosynthesis (plants),
folate polyglutamylation,
tryptophan biosynthesis,
phospholipid biosynthesis II,
homocysteine and cysteine interconversion,
photorespiration,
seleno-amino acid biosynthesis,
glycine biosynthesis,
tRNA charging,
serine racemization,
phosphatidylethanolamine biosynthesis I,
serine biosynthesis,
choline biosynthesis I,
cysteine biosynthesis I,
folate transformations II 		0.53 0.33 -0.31 C0231
63 C0191 Ornithine D,L-Ornithine L-Ornithine arginine degradation I (arginase pathway),
urea cycle,
ornithine biosynthesis,
proline biosynthesis III,
arginine degradation VI (arginase 2 pathway),
arginine biosynthesis II (acetyl cycle),
citrulline biosynthesis,
L-Ndelta-acetylornithine biosynthesis,
arginine biosynthesis I,
citrulline degradation 		0.51 0.31 -0.3 C0191