C0231 : Serine
Query Information
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ID C0231
Compound name Serine
External link   http://pmn.plantcyc.org/ARA/NEW-IMAGE?type=COMPOUND&object=SER
Pathway Information sphingolipid biosynthesis (plants),
folate polyglutamylation,
tryptophan biosynthesis,
phospholipid biosynthesis II,
homocysteine and cysteine interconversion,
photorespiration,
seleno-amino acid biosynthesis,
glycine biosynthesis,
tRNA charging,
serine racemization,
phosphatidylethanolamine biosynthesis I,
serine biosynthesis,
choline biosynthesis I,
cysteine biosynthesis I,
folate transformations II
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G52290 IQ-domain 3 IQ-domain 3 -0.66 0.32 -0.29
2 AT3G46270 receptor protein kinase-related -0.65 0.33 -0.31
3 AT3G10470 C2H2-type zinc finger family protein -0.65 0.32 -0.31
4 AT3G54690 Sugar isomerase (SIS) family protein SETH3 -0.64 0.32 -0.33
5 AT4G32840 phosphofructokinase 6 phosphofructokinase 6 -0.64 0.31 -0.32
6 AT3G06060 NAD(P)-binding Rossmann-fold superfamily protein TSC10A -0.64 0.31 -0.31
7 AT5G04190 phytochrome kinase substrate 4 phytochrome kinase substrate 4 -0.64 0.31 -0.3
8 AT5G15600 SPIRAL1-like4 SPIRAL1-like4 -0.63 0.3 -0.32
9 AT3G16030 lectin protein kinase family protein CALLUS EXPRESSION OF RBCS 101 0.62 0.3 -0.32
10 AT4G18640 Leucine-rich repeat protein kinase family protein morphogenesis of root hair 1 -0.62 0.33 -0.3
11 AT4G10840 Tetratricopeptide repeat (TPR)-like superfamily protein -0.61 0.3 -0.32
12 AT5G10700 Peptidyl-tRNA hydrolase II (PTH2) family protein -0.61 0.31 -0.32
13 AT5G12930 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.6 0.32 -0.32
14 AT5G17580 Phototropic-responsive NPH3 family protein 0.6 0.32 -0.31
15 AT1G56590 Clathrin adaptor complexes medium subunit family protein ZIG SUPPRESSOR 4 -0.6 0.31 -0.32
16 AT4G28040 nodulin MtN21 /EamA-like transporter family protein 0.6 0.31 -0.3
17 AT2G45050 GATA transcription factor 2 GATA transcription factor 2 -0.6 0.31 -0.32
18 AT3G24670 Pectin lyase-like superfamily protein -0.59 0.31 -0.29
19 AT4G28140 Integrase-type DNA-binding superfamily protein -0.59 0.3 -0.32
20 AT2G42990 GDSL-like Lipase/Acylhydrolase superfamily protein -0.59 0.3 -0.31
21 AT3G11700 FASCICLIN-like arabinogalactan protein 18 precursor FASCICLIN-like arabinogalactan
protein 18 precursor		 -0.59 0.32 -0.31
22 AT5G59700 Protein kinase superfamily protein 0.58 0.32 -0.29
23 AT2G39710 Eukaryotic aspartyl protease family protein 0.58 0.32 -0.31
24 AT4G19810 Glycosyl hydrolase family protein with chitinase insertion
domain		 class V chitinase 0.58 0.32 -0.32
25 AT1G74770 zinc ion binding -0.57 0.33 -0.3
26 AT1G19250 flavin-dependent monooxygenase 1 flavin-dependent monooxygenase 1 0.57 0.31 -0.3
27 AT4G33530 K+ uptake permease 5 K+ uptake permease 5 -0.56 0.29 -0.31
28 AT3G01730 unknown protein; Has 8 Blast hits to 8 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.56 0.32 -0.31
29 AT2G47880 Glutaredoxin family protein -0.56 0.33 -0.33
30 AT1G03890 RmlC-like cupins superfamily protein -0.56 0.29 -0.33
31 AT1G12850 Phosphoglycerate mutase family protein -0.55 0.31 -0.3
32 AT4G22680 myb domain protein 85 myb domain protein 85, myb domain
protein 85		 0.55 0.32 -0.35
33 AT1G26650 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G69430.1); Has 205 Blast hits
to 204 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.55 0.31 -0.31
34 AT2G41770 Protein of unknown function (DUF288) -0.55 0.3 -0.3
35 AT5G49520 WRKY DNA-binding protein 48 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 48, WRKY
DNA-binding protein 48		 0.55 0.29 -0.33
36 AT3G60640 Ubiquitin-like superfamily protein AUTOPHAGY 8G 0.55 0.32 -0.3
37 AT4G21050 Dof-type zinc finger domain-containing protein 0.54 0.31 -0.31
38 AT5G14560 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.54 0.3 -0.31
39 AT3G15410 Leucine-rich repeat (LRR) family protein -0.54 0.32 -0.32
40 AT4G04840 methionine sulfoxide reductase B6 methionine sulfoxide reductase B6,
methionine sulfoxide reductase B6		 -0.54 0.32 -0.3
41 AT1G17120 cationic amino acid transporter 8 cationic amino acid transporter 8 -0.53 0.35 -0.31
42 AT4G03330 syntaxin of plants 123 ATSYP123, syntaxin of plants 123 -0.53 0.31 -0.31
43 AT1G50890 ARM repeat superfamily protein -0.53 0.31 -0.31
44 AT1G18050 SWAP (Suppressor-of-White-APricot)/surp RNA-binding
domain-containing protein		 -0.53 0.28 -0.31
45 AT1G01360 regulatory component of ABA receptor 1 PYRABACTIN RESISTANCE 1-LIKE 9,
regulatory component of ABA
receptor 1		 -0.53 0.3 -0.31
46 AT2G43220 Cysteine/Histidine-rich C1 domain family protein -0.53 0.31 -0.32
47 AT3G42910 transposable element gene -0.52 0.32 -0.32
48 AT5G06630 proline-rich extensin-like family protein -0.52 0.32 -0.32
49 AT2G14540 serpin 2 ATSRP2, serpin 2 -0.52 0.33 -0.3
50 AT5G06950 bZIP transcription factor family protein AHBP-1B, TGA2 -0.52 0.31 -0.29
51 AT4G19580 DNAJ heat shock N-terminal domain-containing protein -0.52 0.31 -0.3
52 AT1G75600 Histone superfamily protein 0.52 0.3 -0.32
53 AT5G45840 Leucine-rich repeat protein kinase family protein -0.52 0.32 -0.3
54 AT4G31250 Leucine-rich repeat protein kinase family protein -0.52 0.3 -0.31
55 AT1G53540 HSP20-like chaperones superfamily protein 0.51 0.31 -0.3
56 AT3G21780 UDP-glucosyl transferase 71B6 UDP-glucosyl transferase 71B6 0.51 0.29 -0.31
57 AT1G35230 arabinogalactan protein 5 arabinogalactan protein 5 0.51 0.3 -0.28
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
58 C0231 Serine D,L-Serine D-Serine; L-Serine sphingolipid biosynthesis (plants),
folate polyglutamylation,
tryptophan biosynthesis,
phospholipid biosynthesis II,
homocysteine and cysteine interconversion,
photorespiration,
seleno-amino acid biosynthesis,
glycine biosynthesis,
tRNA charging,
serine racemization,
phosphatidylethanolamine biosynthesis I,
serine biosynthesis,
choline biosynthesis I,
cysteine biosynthesis I,
folate transformations II 		1 0.3 -0.29 C0231
59 C0165 MST_1688.6 - - - 0.89 0.44 -0.45
60 C0160 MST_1509.5 - - - 0.89 0.46 -0.44
61 C0164 MST_1596.8 - - - 0.88 0.44 -0.44
62 C0163 MST_1589.2 - - - 0.86 0.47 -0.45
63 C0023 1,6-Anhydro-β-glucose 1,6-Anhydro-β-D-glucose Levoglucosan - 0.84 0.46 -0.43 C0023
64 C0161 MST_1566.3 - - - 0.8 0.46 -0.47
65 C0055 Alanine D,L-Alanine D-Alanine; L-Alanine alanine degradation III,
beta-alanine biosynthesis II,
biotin biosynthesis II,
IAA biosynthesis II,
molybdenum cofactor biosynthesis II (eukaryotes),
phenylalanine degradation III,
alanine biosynthesis III,
IAA biosynthesis I,
alanine biosynthesis II,
tRNA charging,
molybdenum cofactor biosynthesis,
4-aminobutyrate degradation IV,
alanine degradation II (to D-lactate),
indole-3-acetyl-amino acid biosynthesis,
glutamate degradation IV 		0.71 0.32 -0.33 C0055
66 C0254 Threonine D,L-Threonine L-Threonine isoleucine biosynthesis I (from threonine),
glycine biosynthesis,
threonine biosynthesis from homoserine,
tRNA charging 		0.71 0.33 -0.29 C0254
67 C0116 Hydroxylamine - Hydroxylamine - -0.65 0.46 -0.45 C0116
68 C0127 Isorhamnetin-hexosyl-rhamnoside - - - -0.63 0.43 -0.45
69 C0211 PR_MST_2158.8 - - - 0.6 0.46 -0.44
70 C0102 Glutamine D,L-Glutamine L-Glutamine ammonia assimilation cycle II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
purine nucleotides de novo biosynthesis II,
tetrahydrofolate biosynthesis II,
NAD biosynthesis I (from aspartate),
nitrate reduction II (assimilatory),
5-aminoimidazole ribonucleotide biosynthesis I,
citrulline biosynthesis,
pyrimidine ribonucleotides interconversion,
histidine biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
pyridoxal 5'-phosphate biosynthesis II,
arginine biosynthesis I,
UDP-N-acetyl-D-glucosamine biosynthesis II,
pyridine nucleotide cycling (plants),
glutamate biosynthesis IV,
glutamine biosynthesis III,
glutamate biosynthesis V,
asparagine biosynthesis III (tRNA-dependent),
tryptophan biosynthesis,
L-glutamine biosynthesis II (tRNA-dependent),
uridine-5'-phosphate biosynthesis,
tRNA charging,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
asparagine biosynthesis I 		0.56 0.33 -0.32 C0102
71 C0115 Homoserine D,L-Homoserine Homoserine homoserine biosynthesis,
threonine biosynthesis from homoserine,
methionine biosynthesis II 		0.53 0.32 -0.31 C0115
72 C0194 Phenylalanine D,L-Phenylalanine L-Phenylalanine suberin biosynthesis,
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
indole-3-acetyl-amino acid biosynthesis,
phenylalanine degradation III,
jasmonoyl-amino acid conjugates biosynthesis I,
trans-cinnamoyl-CoA biosynthesis,
phenylethanol biosynthesis,
phenylalanine biosynthesis II,
tRNA charging,
IAA degradation V,
glucosinolate biosynthesis from phenylalanine,
phenylpropanoid biosynthesis, initial reactions 		0.53 0.31 -0.3 C0194