C0232 : Shikimic acid
Query Information
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ID C0232
Compound name Shikimic acid
External link   http://pmn.plantcyc.org/ARA/NEW-IMAGE?type=COMPOUND&object=SHIKIMATE
Pathway Information phenylpropanoid biosynthesis,
chorismate biosynthesis,
simple coumarins biosynthesis
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G05880 UDP-Glycosyltransferase superfamily protein -0.75 0.3 -0.32
2 AT5G24620 Pathogenesis-related thaumatin superfamily protein 0.74 0.32 -0.32
3 AT5G63660 Scorpion toxin-like knottin superfamily protein LOW-MOLECULAR-WEIGHT CYSTEINE-RICH
74, PDF2.5		 -0.72 0.33 -0.31
4 AT4G04750 Major facilitator superfamily protein 0.71 0.34 -0.31
5 AT5G35190 proline-rich extensin-like family protein extensin 13 -0.71 0.31 -0.31
6 AT3G62680 proline-rich protein 3 ARABIDOPSIS THALIANA PROLINE-RICH
PROTEIN 3, proline-rich protein 3		 -0.7 0.32 -0.31
7 AT2G21340 MATE efflux family protein 0.69 0.31 -0.32
8 AT1G04610 YUCCA 3 YUCCA 3 -0.69 0.32 -0.32
9 AT2G32270 zinc transporter 3 precursor zinc transporter 3 precursor -0.69 0.31 -0.31
10 AT1G33800 Protein of unknown function (DUF579) -0.68 0.32 -0.33
11 AT5G67400 root hair specific 19 root hair specific 19 -0.68 0.32 -0.33
12 AT3G17090 Protein phosphatase 2C family protein -0.68 0.31 -0.3
13 AT4G02270 root hair specific 13 root hair specific 13 -0.66 0.34 -0.32
14 AT1G30870 Peroxidase superfamily protein -0.66 0.32 -0.32
15 AT5G04470 cyclin-dependent protein kinase inhibitors SIAMESE -0.66 0.3 -0.33
16 AT5G04960 Plant invertase/pectin methylesterase inhibitor superfamily -0.65 0.32 -0.32
17 AT5G19800 hydroxyproline-rich glycoprotein family protein -0.65 0.31 -0.33
18 AT4G18130 phytochrome E phytochrome E 0.65 0.31 -0.32
19 AT3G26770 NAD(P)-binding Rossmann-fold superfamily protein -0.65 0.3 -0.32
20 AT5G15230 GAST1 protein homolog 4 GAST1 protein homolog 4 -0.65 0.31 -0.33
21 AT3G43430 RING/U-box superfamily protein -0.65 0.3 -0.31
22 AT5G20240 K-box region and MADS-box transcription factor family
protein 		PISTILLATA -0.64 0.31 -0.32
23 AT4G27000 RNA-binding (RRM/RBD/RNP motifs) family protein ATRBP45C -0.64 0.3 -0.34
24 AT1G20900 Predicted AT-hook DNA-binding family protein AT-hook motif nuclear-localized
protein 27, ESCAROLA, ORESARA 7		 -0.64 0.33 -0.32
25 AT5G40200 DegP protease 9 DegP protease 9 -0.64 0.32 -0.34
26 AT1G05200 glutamate receptor 3.4 glutamate receptor 3.4, glutamate
receptor 3.4, GLUR3		 0.64 0.33 -0.32
27 AT4G14090 UDP-Glycosyltransferase superfamily protein 0.64 0.3 -0.31
28 AT5G08210 MIR834a; miRNA microRNA834A 0.64 0.36 -0.31
29 AT4G39675 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.64 0.31 -0.3
30 AT1G21580 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.64 0.33 -0.33
31 AT3G01730 unknown protein; Has 8 Blast hits to 8 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.63 0.34 -0.32
32 AT5G05500 Pollen Ole e 1 allergen and extensin family protein MOP10 -0.63 0.3 -0.35
33 AT1G52070 Mannose-binding lectin superfamily protein -0.62 0.32 -0.33
34 AT2G24980 Proline-rich extensin-like family protein extensin 6 -0.62 0.32 -0.3
35 AT1G80800 pseudogene, 40S ribosomal protein S12 (RPS12B), similar to
ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum
vulgare); blastp match of 65% identity and 4.7e-12 P-value
to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S
ribosomal protein S12 {Oryza sativa (japonica
cultivar-group)}		 0.62 0.34 -0.29
36 AT1G02300 Cysteine proteinases superfamily protein 0.62 0.31 -0.31
37 AT3G49960 Peroxidase superfamily protein -0.62 0.31 -0.32
38 AT2G46860 pyrophosphorylase 3 pyrophosphorylase 3,
pyrophosphorylase 3		 -0.62 0.29 -0.3
39 AT5G48560 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.62 0.3 -0.3
40 AT1G74500 activation-tagged BRI1(brassinosteroid-insensitive
1)-suppressor 1		 activation-tagged
BRI1(brassinosteroid-insensitive
1)-suppressor 1, activation-tagged
BRI1(brassinosteroid-insensitive
1)-suppressor 1, TARGET OF
MONOPTEROS 7		 -0.62 0.3 -0.31
41 AT5G66985 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.61 0.3 -0.31
42 AT1G73700 MATE efflux family protein 0.61 0.31 -0.31
43 AT4G27590 Heavy metal transport/detoxification superfamily protein -0.61 0.34 -0.33
44 AT3G43190 sucrose synthase 4 ARABIDOPSIS THALIANA SUCROSE
SYNTHASE 4, sucrose synthase 4		 -0.61 0.31 -0.31
45 AT3G55850 Amidohydrolase family LONG AFTER FAR-RED 3, LONG AFTER
FAR-RED 3 ISOFORM 1, LAF3 ISOFORM
2		 0.61 0.33 -0.3
46 AT3G12030 Protein of unknown function DUF106, transmembrane -0.6 0.3 -0.33
47 AT4G21326 subtilase 3.12 subtilase 3.12, subtilase 3.12 0.6 0.31 -0.34
48 AT4G26010 Peroxidase superfamily protein -0.6 0.31 -0.3
49 AT2G25980 Mannose-binding lectin superfamily protein -0.6 0.31 -0.33
50 AT1G11720 starch synthase 3 starch synthase 3, starch synthase
3		 0.6 0.32 -0.33
51 AT1G13670 unknown protein; Has 22 Blast hits to 22 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.6 0.33 -0.31
52 AT2G36320 A20/AN1-like zinc finger family protein -0.59 0.31 -0.33
53 AT5G59380 methyl-CPG-binding domain 6 ATMBD6, methyl-CPG-binding domain
6		 -0.59 0.29 -0.31
54 AT3G26760 NAD(P)-binding Rossmann-fold superfamily protein -0.59 0.32 -0.32
55 AT3G23030 indole-3-acetic acid inducible 2 indole-3-acetic acid inducible 2 -0.59 0.33 -0.32
56 AT1G14660 Na+/H+ exchanger 8 Na+/H+ exchanger 8, Na+/H+
exchanger 8, SODIUM HYDROGEN
EXCHANGER 8		 0.59 0.33 -0.33
57 AT1G66680 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 AR401 -0.59 0.33 -0.31
58 AT4G38410 Dehydrin family protein -0.59 0.32 -0.34
59 AT4G30640 RNI-like superfamily protein -0.59 0.33 -0.32
60 AT5G57530 xyloglucan endotransglucosylase/hydrolase 12 AtXTH12, xyloglucan
endotransglucosylase/hydrolase 12		 -0.59 0.31 -0.3
61 AT1G12950 root hair specific 2 root hair specific 2 -0.59 0.32 -0.3
62 AT2G47540 Pollen Ole e 1 allergen and extensin family protein -0.59 0.31 -0.31
63 AT3G50870 GATA type zinc finger transcription factor family protein GATA TRANSCRIPTION FACTOR 18,
HANABA TANARU, MONOPOLE		 -0.58 0.32 -0.31
64 AT2G19590 ACC oxidase 1 ACC oxidase 1, ATACO1 -0.58 0.32 -0.3
65 AT1G17260 autoinhibited H(+)-ATPase isoform 10 autoinhibited H(+)-ATPase isoform
10		 0.58 0.32 -0.31
66 AT1G75540 salt tolerance homolog2 B BOX 21, B-box domain protein 21,
long hypocotyl under shade, salt
tolerance homolog2		 -0.58 0.33 -0.32
67 AT3G54040 PAR1 protein -0.58 0.32 -0.32
68 AT1G56680 Chitinase family protein -0.58 0.32 -0.34
69 AT1G74660 mini zinc finger 1 mini zinc finger 1 -0.57 0.33 -0.3
70 AT5G60980 Nuclear transport factor 2 (NTF2) family protein with RNA
binding (RRM-RBD-RNP motifs) domain		 -0.57 0.29 -0.32
71 AT3G03670 Peroxidase superfamily protein -0.57 0.32 -0.31
72 AT2G41780 unknown protein; Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.57 0.36 -0.33
73 AT1G78150 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G35780.1); Has 152 Blast hits
to 146 proteins in 18 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 2; Plants - 149; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.31 -0.33
74 AT4G03190 GRR1-like protein 1 AUXIN SIGNALING F BOX PROTEIN 1,
ATGRH1, GRR1-like protein 1		 -0.57 0.3 -0.29
75 AT1G12740 cytochrome P450, family 87, subfamily A, polypeptide 2 cytochrome P450, family 87,
subfamily A, polypeptide 2		 -0.57 0.3 -0.32
76 AT3G55720 Protein of unknown function (DUF620) -0.57 0.33 -0.3
77 AT1G30160 Protein of unknown function (DUF295) 0.56 0.33 -0.31
78 AT3G18030 HAL3-like protein A ATHAL3, ARABIDOPSIS THALIANA
HAL3-LIKE PROTEIN A, HALOTOLERANCE
DETERMINANT 3, HAL3-like protein A		 -0.56 0.31 -0.31
79 AT1G28610 GDSL-like Lipase/Acylhydrolase superfamily protein 0.56 0.3 -0.33
80 AT1G62980 expansin A18 ATEXP18, expansin A18, ATHEXP
ALPHA 1.25, EXPANSIN 18, expansin
A18		 -0.56 0.33 -0.3
81 AT4G18510 CLAVATA3/ESR-related 2 CLAVATA3/ESR-related 2 -0.56 0.32 -0.32
82 AT1G48930 glycosyl hydrolase 9C1 glycosyl hydrolase 9C1, glycosyl
hydrolase 9C1		 -0.56 0.3 -0.33
83 AT5G07280 Leucine-rich repeat transmembrane protein kinase EXCESS MICROSPOROCYTES1, EXTRA
SPOROGENOUS CELLS		 0.56 0.32 -0.29
84 AT1G50060 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 -0.56 0.32 -0.32
85 AT5G17800 myb domain protein 56 myb domain protein 56, myb domain
protein 56		 -0.56 0.3 -0.3
86 AT4G15370 baruol synthase 1 baruol synthase 1, PENTACYCLIC
TRITERPENE SYNTHASE 2		 -0.56 0.3 -0.32
87 AT2G45050 GATA transcription factor 2 GATA transcription factor 2 -0.56 0.31 -0.31
88 AT2G24300 Calmodulin-binding protein -0.55 0.32 -0.3
89 AT4G24630 DHHC-type zinc finger family protein 0.55 0.3 -0.32
90 AT5G62760 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.55 0.33 -0.31
91 AT3G27770 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G62960.1); Has 158 Blast hits to 157 proteins in
21 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi -
0; Plants - 141; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 -0.55 0.29 -0.32
92 AT1G23720 Proline-rich extensin-like family protein -0.55 0.31 -0.33
93 AT2G11270 citrate synthase-related 0.55 0.33 -0.31
94 AT2G16910 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 ABORTED MICROSPORES 0.54 0.31 -0.32
95 AT5G60290 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.54 0.3 -0.32
96 AT1G61240 Protein of unknown function (DUF707) 0.54 0.3 -0.31
97 AT1G51520 RNA-binding (RRM/RBD/RNP motifs) family protein 0.53 0.3 -0.33
98 AT1G68630 PLAC8 family protein 0.53 0.33 -0.29
99 AT3G09160 RNA-binding (RRM/RBD/RNP motifs) family protein 0.52 0.31 -0.32
100 AT5G20390 Glycosyl hydrolase superfamily protein 0.52 0.3 -0.3
101 AT4G08480 mitogen-activated protein kinase kinase kinase 9 mitogen-activated protein kinase
kinase kinase 9, MAPK/ERK KINASE
KINASE 2		 0.52 0.32 -0.34
102 AT4G09820 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 BHLH42, TRANSPARENT TESTA 8 0.52 0.33 -0.32
103 AT1G14420 Pectate lyase family protein AT59 0.52 0.34 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
104 C0232 Shikimic acid - Shikimate phenylpropanoid biosynthesis,
chorismate biosynthesis,
simple coumarins biosynthesis 		1 0.32 -0.31 C0232
105 C0182 MST_2996.4 - - - 0.9 0.46 -0.46
106 C0070 Cyanidin 3-O-[2''-O-(2'''-O-(sinapoyl)xylosyl) 6''-O-(p-O-coumaroyl) glucoside] 5-O-[6''''-O-(malonyl) glucoside] - - - 0.84 0.45 -0.44
107 C0071 Cyanidin 3-O-[2''-O-(6'''-O-(sinapoyl) xylosyl) 6''-O-(p-O-(glucosyl)-p-coumaroyl) glucoside] 5-O-(6''''-O-malonyl) glucoside - - - 0.83 0.4 -0.48
108 C0129 Kaempferol-3-(2''-O-α-rhamnosyl)-O-β-glucosyl-7-O-α-rhamnoside Kaempferol-3-(2''-O-α-L-rhamnosyl)-O-β-D-glucosyl-7-O-α-L-rhamnoside - kaempferol glucoside biosynthesis (Arabidopsis) 0.82 0.44 -0.5
109 C0158 MST_1480.5 - - - 0.79 0.47 -0.43
110 C0072 Cyanidin 3-O-[2''-O-(xylosyl) glucoside] 5-O-glucoside - - - 0.79 0.45 -0.5
111 C0009 myo-Inositol - myo-Inositol stachyose biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
D-myo-inositol (1,4,5)-trisphosphate degradation,
galactosylcyclitol biosynthesis,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
phytate degradation I,
myo-inositol biosynthesis,
ajugose biosynthesis I (galactinol-dependent),
phospholipid biosynthesis II 		0.73 0.44 -0.47 C0009
112 C0184 MST_3110.4 - - - 0.7 0.44 -0.48
113 C0127 Isorhamnetin-hexosyl-rhamnoside - - - -0.68 0.44 -0.46
114 C0130 Kaempferol-3-O-α-rhamnopyranosyl(1,2)-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-α-L-rhamnopyranosyl(1,2)-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside - 0.67 0.47 -0.46
115 C0254 Threonine D,L-Threonine L-Threonine isoleucine biosynthesis I (from threonine),
glycine biosynthesis,
threonine biosynthesis from homoserine,
tRNA charging 		0.56 0.32 -0.32 C0254