C0254 : Threonine
Query Information
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ID C0254
Compound name Threonine
External link   http://pmn.plantcyc.org/ARA/NEW-IMAGE?type=COMPOUND&object=THR
Pathway Information isoleucine biosynthesis I (from threonine),
glycine biosynthesis,
threonine biosynthesis from homoserine,
tRNA charging
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G43710 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 embryo defective 1075 -0.77 0.32 -0.31
2 AT3G55380 ubiquitin-conjugating enzyme 14 ubiquitin-conjugating enzyme 14 -0.75 0.29 -0.31
3 AT3G48750 cell division control 2 cell division control 2, CDC2A,
CDC2AAT, CDK2, CDKA1, CDKA;1		 -0.73 0.31 -0.31
4 AT5G05780 RP non-ATPase subunit 8A ASYMMETRIC LEAVES ENHANCER 3,
ATHMOV34, RP non-ATPase subunit 8A		 -0.69 0.33 -0.32
5 AT3G19760 eukaryotic initiation factor 4A-III eukaryotic initiation factor
4A-III		 -0.69 0.3 -0.29
6 AT3G61140 26S proteasome, regulatory subunit Rpn7;Proteasome
component (PCI) domain		 ARABIDOPSIS THALIANA FUSCA 6,
SHAGGY-LIKE KINASE 31,
CONSTITUTIVE PHOTOMORPHOGENIC 11,
COP9 SIGNALOSOME SUBUNIT 1, EMBRYO
DEFECTIVE 78, FUSCA 6, SHAGGY-LIKE
KINASE 31		 -0.69 0.3 -0.29
7 AT1G22790 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G34010.1); Has 67 Blast
hits to 67 proteins in 12 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.33 -0.3
8 AT3G12180 Cornichon family protein -0.67 0.3 -0.31
9 AT2G39900 GATA type zinc finger transcription factor family protein WLIM2a -0.67 0.3 -0.34
10 AT5G23290 prefoldin 5 prefoldin 5 -0.66 0.34 -0.34
11 AT3G43810 calmodulin 7 calmodulin 7 -0.66 0.32 -0.31
12 AT5G11280 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.66 0.31 -0.32
13 AT2G42310 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits
to 115 proteins in 48 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.66 0.32 -0.27
14 AT4G13210 Pectin lyase-like superfamily protein -0.66 0.3 -0.32
15 AT4G29830 Transducin/WD40 repeat-like superfamily protein vernalization independence 3 -0.65 0.31 -0.31
16 AT1G66390 myb domain protein 90 ATMYB90, myb domain protein 90,
PRODUCTION OF ANTHOCYANIN PIGMENT
2		 0.65 0.31 -0.3
17 AT2G23070 Protein kinase superfamily protein -0.65 0.34 -0.32
18 AT5G49170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G06840.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.65 0.3 -0.33
19 AT1G71430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 64
Blast hits to 64 proteins in 28 species: Archae - 0;
Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 -0.64 0.31 -0.3
20 AT1G18580 galacturonosyltransferase 11 galacturonosyltransferase 11 -0.64 0.3 -0.31
21 AT2G44770 ELMO/CED-12 family protein -0.64 0.3 -0.3
22 AT2G20810 galacturonosyltransferase 10 galacturonosyltransferase 10, LGT4 -0.63 0.32 -0.31
23 AT2G41350 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G21980.1); Has 188 Blast hits
to 188 proteins in 66 species: Archae - 0; Bacteria - 12;
Metazoa - 90; Fungi - 15; Plants - 54; Viruses - 0; Other
Eukaryotes - 17 (source: NCBI BLink).		 AtAUG1, augmin 1, EMBRYO DEFECTIVE
2819		 -0.63 0.32 -0.31
24 AT3G60660 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1395 (InterPro:IPR009829); Has 131
Blast hits to 131 proteins in 44 species: Archae - 0;
Bacteria - 0; Metazoa - 83; Fungi - 0; Plants - 45; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink).		 -0.63 0.32 -0.32
25 AT5G23030 tetraspanin12 tetraspanin12 -0.63 0.33 -0.32
26 AT3G18165 modifier of snc1,4 Modifier of snc1,4 -0.63 0.32 -0.32
27 AT1G66740 ASF1 like histone chaperone ANTI- SILENCING FUNCTION 1A,
AtSP7, SGA2, SP7		 -0.63 0.33 -0.3
28 AT3G58120 Basic-leucine zipper (bZIP) transcription factor family
protein		 ATBZIP61, BZIP61 -0.63 0.32 -0.31
29 AT1G12070 Immunoglobulin E-set superfamily protein -0.63 0.32 -0.32
30 AT1G27390 translocase outer membrane 20-2 translocase outer membrane 20-2 -0.62 0.33 -0.32
31 AT1G10020 Protein of unknown function (DUF1005) -0.62 0.3 -0.31
32 AT5G51400 PLAC8 family protein -0.62 0.32 -0.32
33 AT1G74770 zinc ion binding -0.62 0.34 -0.31
34 AT5G41950 Tetratricopeptide repeat (TPR)-like superfamily protein -0.62 0.32 -0.33
35 AT1G26630 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1)
protein		 EUKARYOTIC ELONGATION FACTOR 5A-2,
EUKARYOTIC ELONGATION FACTOR 5A-2,
FUMONISIN B1-RESISTANT12		 -0.62 0.31 -0.32
36 AT2G32270 zinc transporter 3 precursor zinc transporter 3 precursor -0.62 0.32 -0.31
37 AT5G59160 type one serine/threonine protein phosphatase 2 PROTOPORPHYRINOGEN OXIDASE, type
one serine/threonine protein
phosphatase 2		 -0.62 0.3 -0.31
38 AT3G15410 Leucine-rich repeat (LRR) family protein -0.62 0.31 -0.3
39 AT5G57370 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1777 (InterPro:IPR013957); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.62 0.33 -0.34
40 AT1G49210 RING/U-box superfamily protein -0.62 0.32 -0.31
41 AT4G22300 carboxylesterases SUPPRESSOR OF AVRBST-ELICITED
RESISTANCE 1		 -0.61 0.32 -0.29
42 AT4G13940 S-adenosyl-L-homocysteine hydrolase S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE
1, EMBRYO DEFECTIVE 1395,
HOMOLOGY-DEPENDENT GENE SILENCING
1, MATERNAL EFFECT EMBRYO ARREST
58, S-ADENOSYL-L-HOMOCYSTEIN
HYDROLASE 1		 -0.61 0.33 -0.34
43 AT2G43260 F-box and associated interaction domains-containing protein -0.61 0.33 -0.3
44 AT1G12150 Plant protein of unknown function (DUF827) -0.61 0.33 -0.29
45 AT5G59460 scarecrow-like transcription factor 11 (SCL11) -0.61 0.3 -0.33
46 AT2G47320 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 -0.61 0.32 -0.31
47 AT4G28540 casein kinase I-like 6 casein kinase I-like 6, PAPK1 -0.61 0.3 -0.32
48 AT4G29870 Oligosaccharyltransferase complex/magnesium transporter
family protein		 -0.61 0.35 -0.33
49 AT3G08870 Concanavalin A-like lectin protein kinase family protein 0.61 0.3 -0.31
50 AT4G04750 Major facilitator superfamily protein 0.6 0.31 -0.29
51 AT1G65650 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 UCH2 -0.6 0.3 -0.31
52 AT2G34590 Transketolase family protein -0.6 0.3 -0.31
53 AT3G08930 LMBR1-like membrane protein -0.6 0.31 -0.34
54 AT3G22110 20S proteasome alpha subunit C1 20S proteasome alpha subunit C1 -0.6 0.31 -0.32
55 AT1G02310 Glycosyl hydrolase superfamily protein endo-beta-mannanase 1 0.6 0.3 -0.34
56 AT1G04690 potassium channel beta subunit 1 potassium channel beta subunit 1,
KV-BETA1		 -0.6 0.3 -0.31
57 AT5G48760 Ribosomal protein L13 family protein -0.6 0.3 -0.33
58 AT5G07990 Cytochrome P450 superfamily protein CYTOCHROME P450 75B1, D501,
TRANSPARENT TESTA 7		 0.6 0.3 -0.32
59 AT4G21050 Dof-type zinc finger domain-containing protein 0.59 0.29 -0.3
60 AT5G04730 Ankyrin-repeat containing protein -0.59 0.3 -0.33
61 AT5G53890 phytosylfokine-alpha receptor 2 AtPSKR2, phytosylfokine-alpha
receptor 2		 0.59 0.3 -0.33
62 AT3G03160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
intracellular protein transport; LOCATED IN: endomembrane
system, integral to membrane, endoplasmic reticulum;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: B-cell
receptor-associated 31-like (InterPro:IPR008417); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G17190.1); Has 102 Blast hits to 102 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.32 -0.32
63 AT3G13420 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G55535.1); Has 66 Blast hits
to 66 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.34 -0.29
64 AT3G50110 PTEN 3 Arabidopsis thaliana phosphatase
and TENsin homolog deleted on
chromosome ten 3, PTEN 3,
phosphatase and TENsin homolog
deleted on chromosome ten 2B		 -0.59 0.3 -0.31
65 AT1G56180 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G27290.1); Has 436 Blast hits to 436 proteins in
83 species: Archae - 0; Bacteria - 153; Metazoa - 0; Fungi
- 0; Plants - 160; Viruses - 0; Other Eukaryotes - 123
(source: NCBI BLink).		 -0.59 0.3 -0.33
66 AT1G65270 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 13 growth stages; Has
149 Blast hits to 149 proteins in 49 species: Archae - 0;
Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink).		 -0.59 0.31 -0.3
67 AT1G22200 Endoplasmic reticulum vesicle transporter protein -0.59 0.32 -0.31
68 AT5G04190 phytochrome kinase substrate 4 phytochrome kinase substrate 4 -0.59 0.32 -0.31
69 AT2G02470 alfin-like 6 alfin-like 6 -0.59 0.32 -0.31
70 AT3G19980 flower-specific, phytochrome-associated protein phosphatase
3		 flower-specific,
phytochrome-associated protein
phosphatase 3, EMBRYO DEFECTIVE
2736, flower-specific,
phytochrome-associated protein
phosphatase 3, SERINE/THREONINE
PROTEIN PHOSPHATASE		 -0.59 0.32 -0.32
71 AT1G13670 unknown protein; Has 22 Blast hits to 22 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.31 -0.34
72 AT2G10880 transposable element gene 0.57 0.33 -0.31
73 AT4G20880 ethylene-responsive nuclear protein / ethylene-regulated
nuclear protein (ERT2)		 0.57 0.34 -0.32
74 AT4G09360 NB-ARC domain-containing disease resistance protein 0.57 0.33 -0.32
75 AT3G16030 lectin protein kinase family protein CALLUS EXPRESSION OF RBCS 101 0.55 0.33 -0.3
76 AT1G53540 HSP20-like chaperones superfamily protein 0.54 0.31 -0.3
77 AT3G50550 unknown protein; Has 75703 Blast hits to 19796 proteins in
1115 species: Archae - 327; Bacteria - 34383; Metazoa -
14453; Fungi - 7466; Plants - 2586; Viruses - 958; Other
Eukaryotes - 15530 (source: NCBI BLink).		 0.53 0.33 -0.31
78 AT2G14390 unknown protein; Has 294 Blast hits to 290 proteins in 73
species: Archae - 2; Bacteria - 20; Metazoa - 212; Fungi -
5; Plants - 4; Viruses - 0; Other Eukaryotes - 51 (source:
NCBI BLink).		 0.52 0.28 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
79 C0254 Threonine D,L-Threonine L-Threonine isoleucine biosynthesis I (from threonine),
glycine biosynthesis,
threonine biosynthesis from homoserine,
tRNA charging 		1 0.32 -0.33 C0254
80 C0111 Hexa-2-O-glycerol-β-galactopyranoside Hexa-2-O-gllycerol-β-D-galactopyranoside - - 0.85 0.45 -0.44
81 C0123 Isoleucine D,L-Isoleucine L-Isoleucine tRNA charging,
isoleucine biosynthesis I (from threonine),
jasmonoyl-amino acid conjugates biosynthesis I,
isoleucine degradation I 		0.77 0.46 -0.44 C0123
82 C0231 Serine D,L-Serine D-Serine; L-Serine sphingolipid biosynthesis (plants),
folate polyglutamylation,
tryptophan biosynthesis,
phospholipid biosynthesis II,
homocysteine and cysteine interconversion,
photorespiration,
seleno-amino acid biosynthesis,
glycine biosynthesis,
tRNA charging,
serine racemization,
phosphatidylethanolamine biosynthesis I,
serine biosynthesis,
choline biosynthesis I,
cysteine biosynthesis I,
folate transformations II 		0.71 0.3 -0.31 C0231
83 C0210 Phytol E-Phytol Phytol chlorophyll a degradation II,
chlorophyll a degradation,
phytol salvage pathway 		0.7 0.4 -0.41 C0210
84 C0130 Kaempferol-3-O-α-rhamnopyranosyl(1,2)-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-α-L-rhamnopyranosyl(1,2)-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside - 0.68 0.47 -0.48
85 C0165 MST_1688.6 - - - 0.68 0.46 -0.46
86 C0180 MST_2539.9 - - - 0.67 0.47 -0.47
87 C0146 Mannitol D-Mannitol Mannitol mannitol degradation II 0.67 0.43 -0.46 C0146
88 C0029 3-Indolylacetonitrile - Indole-3-acetonitrile indole glucosinolate breakdown (insect chewing induced),
IAA biosynthesis I,
camalexin biosynthesis 		0.61 0.31 -0.29 C0029
89 C0055 Alanine D,L-Alanine D-Alanine; L-Alanine alanine degradation III,
beta-alanine biosynthesis II,
biotin biosynthesis II,
IAA biosynthesis II,
molybdenum cofactor biosynthesis II (eukaryotes),
phenylalanine degradation III,
alanine biosynthesis III,
IAA biosynthesis I,
alanine biosynthesis II,
tRNA charging,
molybdenum cofactor biosynthesis,
4-aminobutyrate degradation IV,
alanine degradation II (to D-lactate),
indole-3-acetyl-amino acid biosynthesis,
glutamate degradation IV 		0.61 0.32 -0.31 C0055
90 C0264 Valine D,L-Valine L-Valine jasmonoyl-amino acid conjugates biosynthesis I,
pantothenate biosynthesis,
IAA degradation V,
valine degradation I,
valine biosynthesis,
tRNA charging,
indole-3-acetyl-amino acid biosynthesis 		0.58 0.33 -0.32 C0264
91 C0232 Shikimic acid - Shikimate phenylpropanoid biosynthesis,
chorismate biosynthesis,
simple coumarins biosynthesis 		0.56 0.34 -0.31 C0232
92 C0194 Phenylalanine D,L-Phenylalanine L-Phenylalanine suberin biosynthesis,
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
indole-3-acetyl-amino acid biosynthesis,
phenylalanine degradation III,
jasmonoyl-amino acid conjugates biosynthesis I,
trans-cinnamoyl-CoA biosynthesis,
phenylethanol biosynthesis,
phenylalanine biosynthesis II,
tRNA charging,
IAA degradation V,
glucosinolate biosynthesis from phenylalanine,
phenylpropanoid biosynthesis, initial reactions 		0.55 0.31 -0.32 C0194