Muatnts or Experiments tir1-1
Treatment No treatment
Control WT
Parental line Col-0
Growth condition 1/2 MS plate
Tissue Aerial part
Mutant description Knockout of auxin receptor
Growth protocol After sterilization of seeds treated with hypochlorous acid (10%) for 10 min, seeds were kept in distilled water for 3 days under dark condition at 4 ˚C to enhance germination. All plants were grown for 7 days on 1/2 MS agar plate (0.8% agar, pH 5.7) at 22 ˚C, 24 h continuous light condition.
Reference Ruegger, M., Dewey, E., Gray, W.M., Hobbie, L., Turner, J., and Estelle, M. (1998). The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast Grr1p. Genes & Development 12, 198-207.
Genes statistics
AGI code p-value Ex value cnt value Signal ratio Annotation Link
AT1G66470 0.0036 0.024 0.166 -2.82 ROOT HAIR DEFECTIVE6
 tair
AT4G08030 0.0193 0.015 0.084 -2.49 transposable element gene
 tair
AT3G55840 0.0301 0.053 0.269 -2.35 Hs1pro-1 protein
 tair
AT5G42380 0.0253 0.025 0.116 -2.24 calmodulin like 37
 tair
AT2G04675 0.0460 0.016 0.073 -2.16 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).
 tair
AT3G02480 0.0139 0.475 2.088 -2.14 Late embryogenesis abundant protein (LEA) family protein
 tair
AT5G63450 0.0456 0.07 0.286 -2.03 cytochrome P450
 tair
AT5G01150 0.0066 0.048 0.189 -1.99 Protein of unknown function (DUF674)
 tair
AT5G45340 0.0155 0.624 2.42 -1.95 cytochrome P450
 tair
AT2G34830 0.0039 0.036 0.138 -1.94 WRKY DNA-binding protein 35
 tair
AT1G61800 0.0442 1.776 0.463 1.94 glucose-6-phosphate/phosphate translocator 2
 tair
AT4G36700 0.0102 0.413 1.567 -1.92 RmlC-like cupins superfamily protein
 tair
AT1G69990 0.0069 0.163 0.045 1.85 Leucine-rich repeat protein kinase family protein
 tair
AT1G16150 0.0450 0.037 0.133 -1.84 wall associated kinase-like 4
 tair
AT2G39030 0.0320 0.333 0.1 1.74 Acyl-CoA N-acyltransferases (NAT) superfamily protein
 tair
AT1G21100 0.0058 0.149 0.446 -1.58 O-methyltransferase family protein
 tair
AT5G45630 0.0483 0.148 0.418 -1.49 Protein of unknown function
 tair
AT1G24210 0.0060 0.131 0.357 -1.44 Paired amphipathic helix (PAH2) superfamily protein
 tair
AT1G05575 0.0259 0.449 1.212 -1.43 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: anaerobic respiration; LOCATED IN:
endomembrane system; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
 tair
AT2G22620 0.0287 0.078 0.21 -1.42 Rhamnogalacturonate lyase family protein
 tair
AT4G17490 0.0492 0.917 2.44 -1.41 ethylene responsive element binding factor 6
AT1G66090 0.0003 0.434 1.145 -1.4 Disease resistance protein (TIR-NBS class)
AT5G04150 0.0322 1.709 4.522 -1.4 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein
AT1G61340 0.0064 0.514 1.271 -1.31 F-box family protein
AT3G53480 0.0355 0.099 0.245 -1.31 pleiotropic drug resistance 9
AT4G27657 0.0225 1.144 2.815 -1.3 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G54145.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).
AT5G45080 0.0230 0.269 0.11 1.29 phloem protein 2-A6
AT1G11070 0.0321 0.174 0.072 1.27 BEST Arabidopsis thaliana protein match is:
Hydroxyproline-rich glycoprotein family protein
(TAIR:AT1G61080.1); Has 579 Blast hits to 567 proteins in
152 species: Archae - 0; Bacteria - 68; Metazoa - 159;
Fungi - 113; Plants - 172; Viruses - 0; Other Eukaryotes -
67 (source: NCBI BLink).
AT1G80840 0.0155 1.362 3.26 -1.26 WRKY DNA-binding protein 40
AT3G56980 0.0269 4.083 9.756 -1.26 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein
AT5G17350 0.0368 0.649 1.527 -1.24 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G03280.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).
AT5G11920 0.0119 0.417 0.176 1.24 6-&1-fructan exohydrolase
AT2G38470 0.0177 1.996 4.69 -1.23 WRKY DNA-binding protein 33
AT1G12030 0.0095 1.343 3.128 -1.22 Protein of unknown function (DUF506)
AT3G04200 0.0437 0.253 0.109 1.21 RmlC-like cupins superfamily protein
AT1G51800 0.0461 1.155 0.506 1.19 Leucine-rich repeat protein kinase family protein
AT3G28220 0.0081 7.608 16.556 -1.12 TRAF-like family protein
AT1G76600 0.0045 4.119 8.959 -1.12 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
nucleolus
AT2G46400 0.0466 0.499 1.081 -1.11 WRKY DNA-binding protein 46
AT5G36910 0.0162 2.841 6.056 -1.09 thionin 2.2
AT1G59590 0.0147 0.555 1.183 -1.09 ZCF37
AT3G43840 0.0359 0.193 0.091 1.09 3-oxo-5-alpha-steroid 4-dehydrogenase family protein
AT4G00940 0.0186 0.21 0.44 -1.06 Dof-type zinc finger DNA-binding family protein
AT1G58070 0.0134 0.521 1.079 -1.05 unknown protein; Has 286 Blast hits to 266 proteins in 81
species: Archae - 2; Bacteria - 25; Metazoa - 90; Fungi -
19; Plants - 78; Viruses - 4; Other Eukaryotes - 68
(source: NCBI BLink).
AT3G15310 0.0242 0.332 0.164 1.02 transposable element gene
AT3G06160 0.0434 0.269 0.544 -1.01 AP2/B3-like transcriptional factor family protein
AT2G25735 0.0096 1.34 2.682 -1 unknown protein; Has 31 Blast hits to 31 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
AT5G47230 0.0336 0.79 1.579 -1 ethylene responsive element binding factor 5
AT2G44170 0.0441 0.208 0.104 1 pseudogene
AT5G06640 0.0157 0.507 0.256 0.99 Proline-rich extensin-like family protein
AT2G39650 0.0148 0.838 1.659 -0.99 Protein of unknown function (DUF506)
AT1G23710 0.0153 0.843 1.666 -0.98 Protein of unknown function (DUF1645)
AT3G49070 0.0307 0.196 0.385 -0.97 Protein of unknown function (DUF677)
AT1G02310 0.0187 0.35 0.18 0.96 Glycosyl hydrolase superfamily protein
AT2G41100 0.0459 13.721 26.727 -0.96 Calcium-binding EF hand family protein
AT5G57560 0.0265 5.73 11.087 -0.95 Xyloglucan endotransglucosylase/hydrolase family protein
AT1G57570 0.0449 0.114 0.06 0.93 Mannose-binding lectin superfamily protein
AT1G33960 0.0278 0.129 0.069 0.9 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
AT2G04420 0.0143 0.172 0.092 0.9 Polynucleotidyl transferase
AT5G62730 0.0391 0.381 0.204 0.9 Major facilitator superfamily protein
AT5G43580 0.0356 0.428 0.798 -0.9 Serine protease inhibitor
AT1G51790 0.0377 0.842 0.451 0.9 Leucine-rich repeat protein kinase family protein
AT1G10050 0.0111 0.489 0.264 0.89 glycosyl hydrolase family 10 protein / carbohydrate-binding
domain-containing protein
AT5G39860 0.0167 0.524 0.972 -0.89 basic helix-loop-helix (bHLH) DNA-binding family protein
AT1G15010 0.0158 0.617 1.138 -0.88 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G01300.1); Has 71 Blast hits
to 71 proteins in 13 species: Archae - 0; Bacteria - 2;
Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
AT2G38320 0.0132 0.358 0.658 -0.88 TRICHOME BIREFRINGENCE-LIKE 34
AT1G47400 0.0348 14.38 26.371 -0.87 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G47395.1); Has 11 Blast hits
to 11 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
AT1G28330 0.0363 2.619 4.757 -0.86 dormancy-associated protein-like 1
AT3G55710 0.0202 0.535 0.971 -0.86 UDP-Glycosyltransferase superfamily protein
AT1G19230 0.0145 0.228 0.409 -0.85 Riboflavin synthase-like superfamily protein
AT1G18710 0.0476 0.589 1.058 -0.85 myb domain protein 47
AT1G04600 0.0329 0.221 0.124 0.83 myosin XI A
AT2G18700 0.0490 2.901 5.147 -0.83 trehalose phosphatase/synthase 11
AT1G09500 0.0283 0.406 0.72 -0.83 NAD(P)-binding Rossmann-fold superfamily protein
AT4G26260 0.0193 0.206 0.362 -0.82 myo-inositol oxygenase 4
AT3G15210 0.0266 3.953 6.993 -0.82 ethylene responsive element binding factor 4
AT1G70290 0.0232 3.872 6.786 -0.81 trehalose-6-phosphatase synthase S8
AT5G56250 0.0134 1.133 0.646 0.81 hapless 8
AT1G67865 0.0126 3.779 6.63 -0.81 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G67860.1); Has 13 Blast hits
to 13 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
AT5G44740 0.0006 0.359 0.632 -0.81 Y-family DNA polymerase H
AT1G33350 0.0229 0.413 0.237 0.8 Pentatricopeptide repeat (PPR) superfamily protein
AT5G22310 0.0326 0.406 0.707 -0.8 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G11590.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).
AT2G23810 0.0409 7.358 12.782 -0.8 tetraspanin8
AT3G10020 0.0113 3.851 6.677 -0.79 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to oxidative stress
AT5G10140 0.0054 0.276 0.476 -0.79 K-box region and MADS-box transcription factor family
protein
AT5G24420 0.0048 1.269 2.198 -0.79 6-phosphogluconolactonase 5
AT3G16380 0.0488 0.441 0.255 0.79 poly(A) binding protein 6
AT2G36220 0.0080 1.395 2.394 -0.78 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G52710.1); Has 74 Blast hits
to 74 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
AT1G14390 0.0244 0.257 0.15 0.78 Leucine-rich repeat protein kinase family protein
AT1G04220 0.0440 0.626 0.366 0.78 3-ketoacyl-CoA synthase 2
AT2G41010 0.0207 1.33 2.272 -0.77 calmodulin (CAM)-binding protein of 25 kDa
AT3G56880 0.0151 14.225 24.177 -0.77 VQ motif-containing protein
AT1G11260 0.0133 6.018 10.175 -0.76 sugar transporter 1
AT4G33985 0.0185 0.538 0.903 -0.75 Protein of unknown function (DUF1685)
AT3G26760 0.0258 0.402 0.67 -0.74 NAD(P)-binding Rossmann-fold superfamily protein
AT4G17500 0.0446 1.223 2.048 -0.74 ethylene responsive element binding factor 1
AT5G66070 0.0019 1.122 1.877 -0.74 RING/U-box superfamily protein
AT5G01310 0.0275 0.529 0.316 0.74 APRATAXIN-like
AT3G14050 0.0223 2.469 4.081 -0.73 RELA/SPOT homolog 2
AT1G15520 0.0363 0.37 0.223 0.73 pleiotropic drug resistance 12
AT2G10070 0.0088 0.32 0.193 0.73 transposable element gene
AT4G33920 0.0144 0.751 1.247 -0.73 Protein phosphatase 2C family protein
AT1G22190 0.0218 2.918 4.853 -0.73 Integrase-type DNA-binding superfamily protein
AT2G29120 0.0139 0.823 0.496 0.73 glutamate receptor 2.7
AT2G21710 0.0062 0.728 0.442 0.72 Mitochondrial transcription termination factor family
protein
AT2G23130 0.0472 2.575 1.562 0.72 arabinogalactan protein 17
AT2G25900 0.0051 7.765 12.832 -0.72 Zinc finger C-x8-C-x5-C-x3-H type family protein
AT1G35513 0.0366 0.191 0.116 0.72 pseudogene of isochorismate synthase-related /
isochorismate mutase-related
AT3G61640 0.0129 1.47 2.42 -0.72 arabinogalactan protein 20
AT5G10280 0.0216 0.22 0.134 0.71 myb domain protein 92
AT1G18740 0.0297 4.715 7.698 -0.71 Protein of unknown function (DUF793)
AT1G19290 0.0177 0.435 0.268 0.7 Pentatricopeptide repeat (PPR) superfamily protein
AT1G07745 0.0479 0.302 0.491 -0.7 homolog of RAD51 D
AT3G57450 0.0304 9.488 15.381 -0.7 unknown protein; Has 65 Blast hits to 65 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
AT1G53170 0.0075 2.794 4.501 -0.69 ethylene response factor 8
AT1G21830 0.0346 2.798 4.522 -0.69 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF740 (InterPro:IPR008004); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G44608.1); Has 49 Blast hits to 49 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
AT5G64530 0.0278 0.318 0.198 0.68 xylem NAC domain 1
AT2G33580 0.0068 0.628 0.997 -0.67 Protein kinase superfamily protein
AT1G69440 0.0178 1.139 0.714 0.67 Argonaute family protein
AT1G25400 0.0460 0.957 1.525 -0.67 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G68440.1); Has 21 Blast hits
to 21 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
AT1G69890 0.0409 1.012 1.607 -0.67 Protein of unknown function (DUF569)
AT5G53820 0.0377 0.468 0.297 0.66 Late embryogenesis abundant protein (LEA) family protein
AT5G16080 0.0051 0.278 0.176 0.66 carboxyesterase 17
AT3G13730 0.0251 0.431 0.272 0.66 cytochrome P450
AT1G62422 0.0249 1.525 2.411 -0.66 unknown protein; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G12020.1); Has 87 Blast hits to 86 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
AT4G16447 0.0138 0.755 1.191 -0.66 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).
AT3G44740 0.0346 0.976 0.616 0.66 Class II aaRS and biotin synthetases superfamily protein
AT5G59780 0.0203 2.414 1.541 0.65 myb domain protein 59
AT2G24600 0.0366 1.868 2.925 -0.65 Ankyrin repeat family protein
AT5G22540 0.0404 0.479 0.305 0.65 Plant protein of unknown function (DUF247)
AT4G23180 0.0297 4.642 7.295 -0.65 cysteine-rich RLK (RECEPTOR-like protein kinase) 10
AT1G24440 0.0248 2.1 3.27 -0.64 RING/U-box superfamily protein
AT1G23100 0.0022 0.655 1.02 -0.64 GroES-like family protein
AT2G39230 0.0167 0.278 0.179 0.64 LATERAL ORGAN JUNCTION
AT5G07040 0.0272 0.307 0.479 -0.64 RING/U-box superfamily protein
AT4G34150 0.0115 4.946 7.72 -0.64 Calcium-dependent lipid-binding (CaLB domain) family
protein
AT3G44990 0.0055 6.091 3.906 0.64 xyloglucan endo-transglycosylase-related 8
AT4G33040 0.0119 2.038 1.312 0.64 Thioredoxin superfamily protein
AT2G42870 0.0240 0.941 1.448 -0.62 phy rapidly regulated 1
AT1G69580 0.0425 0.59 0.907 -0.62 Homeodomain-like superfamily protein
AT4G13560 0.0306 0.766 0.499 0.62 Late embryogenesis abundant protein (LEA) family protein
AT3G01960 0.0450 0.579 0.892 -0.62 unknown protein; Has 13 Blast hits to 13 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
AT4G35500 0.0096 0.838 0.545 0.62 Protein kinase superfamily protein
AT5G45970 0.0446 0.243 0.372 -0.62 RAC-like 2
AT3G18170 0.0253 0.331 0.504 -0.61 Glycosyltransferase family 61 protein
AT4G23930 0.0365 0.5 0.765 -0.61 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family
AT1G74670 0.0044 19.817 30.304 -0.61 Gibberellin-regulated family protein
AT3G17950 0.0196 0.692 1.056 -0.61 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 10 growth stages; Has 63 Blast hits to 63 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).
AT5G50330 0.0141 0.393 0.599 -0.61 Protein kinase superfamily protein

more...

Metabolites statistics
CID p-value Ex value cnt value Signal ratio Annotation Link
C0178 0.0326 1.839 3.814 -1.05 MST_2446.7
C0139 0.0097 54.716 108.089 -0.98 Linoleic acid compound
C0105 0.0148 5548.333 2835.333 0.97 Glutathione disulfide compound
C0145 0.0038 250.667 127.667 0.97 Maltotetraose compound
C0171 0.0313 17.643 28.472 -0.69 MST_2182.9
C0164 0.0083 577.410 363.176 0.67 MST_1596.8