4.0:Information of module
Brassinolide 3 h (det2)
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 3.568e-13
GO:0009719 response to endogenous stimulus BP 3.368e-12
GO:0042221 response to chemical BP 6.893e-11
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 1.586e-06
GO:0042221 response to chemical BP 1.476e-05
GO:0006066 alcohol metabolic process BP 1.859e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Brassinolide 3 h (det2)		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 1.011 -0.592
2 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 0.858 0.605
3 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.765 -0.886
4 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.745 0.466
5 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 0.699 0.302
6 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 0.663 1.084
7 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 0.642 0.027
8 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 0.616 -1.057
9 263207_at AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 0.612 0.830
10 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 0.611 0.300
11 249071_at AT5G44050 [MATE efflux family protein] 0.592 -0.845
12 248912_at AT5G45670 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.580 0.950
13 255028_at AT4G09890 unknown 0.573 -1.023
14 249011_at AT5G44670 GALS2, galactan synthase 2 0.570 0.479
15 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 0.557 0.684
16 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 0.552 0.535
17 252624_at AT3G44735 ATPSK3, PHYTOSULFOKINE 3 PRECURSOR, PSK1, PSK3, PHYTOSULFOKINE 3 PRECURSOR 0.504 0.836
18 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 0.502 -0.584
19 252970_at AT4G38850 ATSAUR15, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-AC1, ARABIDOPSIS COLUMBIA SAUR GENE 1, SAUR15, SMALL AUXIN UPREGULATED 15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA 0.486 0.477
20 249306_at AT5G41400 [RING/U-box superfamily protein] 0.485 -0.748
21 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 0.477 -0.270
22 254606_at AT4G19030 AT-NLM1, ATNLM1, NOD26-LIKE MAJOR INTRINSIC PROTEIN 1, NIP1;1, NOD26-LIKE INTRINSIC PROTEIN 1;1, NLM1, NOD26-like major intrinsic protein 1 0.471 1.418
23 253736_at AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.465 -0.549
24 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 0.449 0.078
25 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 0.449 -0.872
26 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 0.446 1.118
27 247255_at AT5G64780 [Uncharacterised conserved protein UCP009193] 0.430 -0.760
28 252997_at AT4G38400 ATEXLA2, expansin-like A2, ATEXPL2, ATHEXP BETA 2.2, EXLA2, expansin-like A2, EXPL2, EXPANSIN L2 0.423 0.980
29 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 0.418 0.416
30 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 0.417 0.813
31 245262_at AT4G16563 [Eukaryotic aspartyl protease family protein] 0.417 -0.046
32 263467_at AT2G31730 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.389 -0.346
33 266873_at AT2G44740 CYCP4;1, cyclin p4;1 0.378 -0.036
34 248921_at AT5G45950 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.374 1.163
35 256627_at AT3G19970 [alpha/beta-Hydrolases superfamily protein] 0.368 0.442
36 258468_at AT3G06070 unknown 0.367 -0.722
37 251922_at AT3G54030 BSK6, brassinosteroid-signaling kinase 6 0.358 0.282
38 264016_at AT2G21220 SAUR12, SMALL AUXIN UPREGULATED RNA 12 0.358 -1.405
39 249750_at AT5G24570 unknown 0.356 0.735
40 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 0.341 -0.152
41 245574_at AT4G14750 IQD19, IQ-domain 19 0.336 0.948
42 251861_at AT3G54810 BME3, BLUE MICROPYLAR END 3, BME3-ZF, BLUE MICROPYLAR END 3-ZINC FINGER, GATA8, GATA TRANSCRIPTION FACTOR 8 0.332 -0.035
43 248819_at AT5G47050 [SBP (S-ribonuclease binding protein) family protein] 0.328 0.551
44 258528_at AT3G06770 [Pectin lyase-like superfamily protein] 0.308 -0.032
45 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 0.305 0.799
46 266956_at AT2G34510 unknown 0.305 -0.428
47 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 0.305 -0.872
48 256633_at AT3G28340 GATL10, galacturonosyltransferase-like 10, GolS8, galactinol synthase 8 0.303 -0.162
49 266749_at AT2G47060 PTI1-4, Pto-interacting 1-4 0.299 -0.532
50 251584_at AT3G58620 TTL4, tetratricopetide-repeat thioredoxin-like 4 0.296 0.283
51 260840_at AT1G29050 TBL38, TRICHOME BIREFRINGENCE-LIKE 38 0.293 0.161
52 254608_at AT4G18910 ATNLM2, NOD26-LIKE INTRINSIC PROTEIN 2, NIP1;2, NOD26-like intrinsic protein 1;2, NLM2, NOD26-LIKE INTRINSIC PROTEIN 2 0.287 0.230
53 256755_at AT3G25600 [Calcium-binding EF-hand family protein] 0.286 0.175
54 248179_at AT5G54380 THE1, THESEUS1 0.280 0.187
55 260494_at AT2G41820 PXC3, PXY/TDR-correlated 3 0.280 0.224
56 263800_at AT2G24600 [Ankyrin repeat family protein] 0.279 0.717
57 254110_at AT4G25260 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.279 -0.208
58 250875_at AT5G04020 [calmodulin binding] 0.276 -0.773
59 245244_at AT1G44350 ILL6, IAA-leucine resistant (ILR)-like gene 6 0.276 -0.340
60 250437_at AT5G10430 AGP4, arabinogalactan protein 4, ATAGP4 0.275 0.988
61 252711_at AT3G43720 LTPG2, glycosylphosphatidylinositol-anchored lipid protein transfer 2 0.273 1.374
62 266805_at AT2G30010 TBL45, TRICHOME BIREFRINGENCE-LIKE 45 0.271 -0.697
63 267592_at AT2G39710 [Eukaryotic aspartyl protease family protein] 0.271 -0.526
64 256598_at AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -1.229 -0.116
65 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] -0.886 -0.416
66 250752_at AT5G05690 CBB3, CABBAGE 3, CPD, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CYP90, CYP90A, CYP90A1, CYTOCHROME P450 90A1, DWF3, DWARF 3 -0.774 0.864
67 267305_at AT2G30070 ATKT1, potassium transporter 1, ATKT1P, ATKUP1, KT1, potassium transporter 1, KUP1, POTASSIUM UPTAKE TRANSPORTER 1 -0.761 0.400
68 255538_at AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -0.655 0.131
69 262635_at AT1G06570 HPD, 4-hydroxyphenylpyruvate dioxygenase, HPPD, 4-hydroxyphenylpyruvate dioxygenase, PDS1, phytoene desaturation 1 -0.644 -0.045
70 246284_at AT4G36780 BEH2, BES1/BZR1 homolog 2 -0.644 0.173
71 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.638 -0.528
72 251785_at AT3G55130 ABCG19, ATP-binding cassette G19, ATWBC19, white-brown complex homolog 19, WBC19, white-brown complex homolog 19 -0.473 -0.015
73 247880_at AT5G57780 P1R1, P1R1 -0.471 -0.969
74 245784_at AT1G32190 [alpha/beta-Hydrolases superfamily protein] -0.422 1.172
75 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 -0.414 -0.320
76 247351_at AT5G63790 ANAC102, NAC domain containing protein 102, NAC102, NAC domain containing protein 102 -0.396 -0.564
77 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 -0.391 0.922
78 248895_at AT5G46330 FLS2, FLAGELLIN-SENSITIVE 2 -0.381 0.190
79 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.371 -0.330
80 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] -0.367 -0.280
81 261191_at AT1G32900 GBSS1, granule bound starch synthase 1 -0.364 -0.140
82 266983_at AT2G39400 [alpha/beta-Hydrolases superfamily protein] -0.350 0.301
83 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 -0.348 -0.631
84 256062_at AT1G07090 LSH6, LIGHT SENSITIVE HYPOCOTYLS 6 -0.332 -0.148
85 248381_at AT5G51830 [pfkB-like carbohydrate kinase family protein] -0.326 0.068
86 251181_at AT3G62820 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.315 -0.769
87 250907_at AT5G03670 TRM28, TON1 Recruiting Motif 28 -0.310 -0.136
88 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 -0.309 -0.546
89 253042_at AT4G37550 [Acetamidase/Formamidase family protein] -0.294 0.469
90 257232_at AT3G16500 IAA26, indole-3-acetic acid inducible 26, PAP1, phytochrome-associated protein 1 -0.290 1.253
91 253999_at AT4G26200 ACCS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ACS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ATACS7 -0.289 0.002
92 261292_at AT1G36940 unknown -0.286 -0.910
93 260230_at AT1G74500 ATBS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, bHLH135, basic helix-loop-helix protein 135, BS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, PRE3, PACLOBUTRAZOL RESISTANCE 3, TMO7, TARGET OF MONOPTEROS 7 -0.286 0.370
94 260979_at AT1G53510 ATMPK18, ARABIDOPSIS THALIANA MAP KINASE 18, MPK18, mitogen-activated protein kinase 18 -0.281 0.803
95 264510_at AT1G09530 PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, phytochrome interacting factor 3, POC1, PHOTOCURRENT 1 -0.269 0.907
96 261456_at AT1G21050 unknown -0.266 0.620
97 264037_at AT2G03750 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.245 0.741
98 261224_at AT1G20160 ATSBT5.2 -0.244 -1.388
99 252661_at AT3G44450 unknown -0.244 1.058
100 247191_at AT5G65310 ATHB-5, ATHB5, homeobox protein 5, HB5, homeobox protein 5 -0.236 0.349
101 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 -0.236 1.750
102 261070_at AT1G07390 AtRLP1, receptor like protein 1, RLP1, receptor like protein 1 -0.232 -0.135
103 253425_at AT4G32190 [Myosin heavy chain-related protein] -0.229 -0.819
104 265245_at AT2G43060 AtIBH1, IBH1, ILI1 binding bHLH 1 -0.227 -0.265
105 255829_at AT2G40540 ATKT2, ATKUP2, KT2, potassium transporter 2, KUP2, SHY3, TRK2 -0.226 0.291
106 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 -0.226 0.887
107 260073_at AT1G73660 SIS8, SUGAR INSENSITIVE 8 -0.225 0.028
108 262505_at AT1G21680 [DPP6 N-terminal domain-like protein] -0.225 -0.548
109 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] -0.217 -1.309
110 264200_at AT1G22650 A/N-InvD, alkaline/neutral invertase D -0.215 0.085
111 267337_at AT2G39980 [HXXXD-type acyl-transferase family protein] -0.213 1.129
112 266095_at AT2G38050 ATDET2, DET2, DE-ETIOLATED 2, DWF6, DWARF 6 -0.204 -0.352
113 249325_at AT5G40850 UPM1, urophorphyrin methylase 1 -0.204 0.608
114 259723_at AT1G60960 ATIRT3, IRON REGULATED TRANSPORTER 3, IRT3, iron regulated transporter 3 -0.200 0.432
115 251459_at AT3G60200 unknown -0.195 0.460
116 247136_at AT5G66170 STR18, sulfurtransferase 18 -0.188 0.487
117 264246_at AT1G60140 ATTPS10, trehalose phosphate synthase, TPS10, trehalose phosphate synthase, TPS10, TREHALOSE PHOSPHATE SYNTHASE 10 -0.185 0.229
118 247407_at AT5G62900 unknown -0.185 -0.061
119 253812_at AT4G28240 [Wound-responsive family protein] -0.184 0.503
120 257460_at AT1G75580 SAUR51, SMALL AUXIN UPREGULATED RNA 51 -0.182 1.008
121 262388_at AT1G49320 unknown -0.181 -0.372
122 250911_at AT5G03730 AtCTR1, CTR1, CONSTITUTIVE TRIPLE RESPONSE 1, SIS1, SUGAR-INSENSITIVE 1 -0.171 0.875
123 259643_at AT1G68890 PHYLLO, PHYLLO -0.167 0.292
124 263866_at AT2G36950 [Heavy metal transport/detoxification superfamily protein ] -0.167 0.779
125 249124_at AT5G43740 [Disease resistance protein (CC-NBS-LRR class) family] -0.166 -0.951