4.0:Information of module
AVG 3 h
In comparison with Cold Stress 24 h (shoot) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006073 cellular glucan metabolic process BP 1.956e-03
GO:0044042 glucan metabolic process BP 1.956e-03
GO:0016144 S-glycoside biosynthetic process BP 2.543e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009873 ethylene-activated signaling pathway BP 1.490e-06
GO:0000160 phosphorelay signal transduction system BP 4.722e-06
GO:0071369 cellular response to ethylene stimulus BP 5.940e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
AVG 3 h 		Log2 signal ratio
Cold Stress 24 h (shoot)
1 259348_at AT3G03770 [Leucine-rich repeat protein kinase family protein] 0.389 0.030
2 263829_at AT2G40435 unknown 0.368 -0.262
3 245341_at AT4G16447 unknown 0.245 -0.260
4 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 0.209 -0.338
5 249531_at AT5G38770 AtGDU7, glutamine dumper 7, GDU7, glutamine dumper 7 0.198 -0.028
6 265665_at AT2G27420 [Cysteine proteinases superfamily protein] 0.193 -1.375
7 252572_at AT3G45290 ATMLO3, MILDEW RESISTANCE LOCUS O 3, MLO3, MILDEW RESISTANCE LOCUS O 3 0.184 -0.078
8 251232_at AT3G62780 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.178 0.139
9 249191_at AT5G42760 [Leucine carboxyl methyltransferase] 0.174 -0.165
10 253516_at AT4G31360 [selenium binding] 0.167 -0.194
11 248029_at AT5G55700 BAM4, beta-amylase 4, BMY6, BETA-AMYLASE 6 0.140 0.183
12 256275_at AT3G12110 ACT11, actin-11 0.140 -0.502
13 245678_at AT1G56610 [Protein with RNI-like/FBD-like domains] 0.138 0.033
14 265312_at AT2G20240 TRM17, TON1 Recruiting Motif 17 0.137 -0.266
15 246783_at AT5G27360 SFP2 0.134 -0.421
16 259858_at AT1G68400 [leucine-rich repeat transmembrane protein kinase family protein] 0.128 -0.190
17 266798_at AT2G22850 AtbZIP6, basic leucine-zipper 6, bZIP6, basic leucine-zipper 6 0.127 -0.034
18 247877_at AT5G57740 XBAT32, XB3 ortholog 2 in Arabidopsis thaliana 0.125 -0.089
19 251116_at AT3G63470 scpl40, serine carboxypeptidase-like 40 0.121 0.056
20 267284_at AT2G23700 unknown 0.119 -0.078
21 263650_at AT1G04360 [RING/U-box superfamily protein] 0.118 -0.077
22 247837_at AT5G57840 [HXXXD-type acyl-transferase family protein] 0.117 -0.036
23 258912_at AT3G06460 [GNS1/SUR4 membrane protein family] 0.115 0.111
24 258170_at AT3G21600 [Senescence/dehydration-associated protein-related] 0.113 -0.043
25 259172_at AT3G03630 CS26, cysteine synthase 26 0.112 -0.017
26 246700_at AT5G28030 DES1, L-cysteine desulfhydrase 1 0.110 0.044
27 252236_at AT3G49930 [C2H2 and C2HC zinc fingers superfamily protein] 0.107 0.076
28 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.103 0.080
29 264240_at AT1G54820 [Protein kinase superfamily protein] 0.100 -0.443
30 246008_at AT5G08320 unknown 0.099 -0.023
31 247474_at AT5G62280 unknown -0.648 0.335
32 247878_at AT5G57760 unknown -0.639 0.365
33 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.557 0.069
34 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 -0.510 0.037
35 267337_at AT2G39980 [HXXXD-type acyl-transferase family protein] -0.464 0.284
36 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 -0.379 0.150
37 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] -0.332 0.041
38 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 -0.233 0.049
39 251268_at AT3G62350 unknown -0.210 0.062
40 253908_at AT4G27260 GH3.5, WES1 -0.207 0.150
41 249941_at AT5G22270 unknown -0.205 -0.026
42 253067_at AT4G37780 ATMYB87, MYB87, myb domain protein 87 -0.197 -0.018
43 246935_at AT5G25350 EBF2, EIN3-binding F box protein 2 -0.195 0.301
44 251291_at AT3G61900 SAUR33, SMALL AUXIN UPREGULATED RNA 33 -0.193 0.092
45 258474_at AT3G02650 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.184 0.218
46 253713_at AT4G29370 [Galactose oxidase/kelch repeat superfamily protein] -0.184 0.084
47 253315_at AT4G33900 [Galactose oxidase/kelch repeat superfamily protein] -0.175 0.044
48 254527_at AT4G19610 [nucleotide binding] -0.174 0.113
49 257184_at AT3G13090 ABCC6, ATP-binding cassette C6, ATMRP8, multidrug resistance-associated protein 8, MRP8, multidrug resistance-associated protein 8 -0.167 0.055
50 247135_at AT5G66260 SAUR11, SMALL AUXIN UPREGULATED RNA 11 -0.165 0.008
51 262753_at AT1G16340 ATKDSA2, ATKSDA -0.161 -0.103
52 251371_at AT3G60360 EDA14, EMBRYO SAC DEVELOPMENT ARREST 14, UTP11, U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11 -0.160 0.319
53 261876_at AT1G50590 [RmlC-like cupins superfamily protein] -0.160 -0.276
54 248782_at AT5G47340 [alpha/beta-Hydrolases superfamily protein] -0.157 0.015
55 267250_at AT2G23060 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.156 0.102
56 262810_at AT1G11710 [Pentatricopeptide repeat (PPR) superfamily protein] -0.155 -0.050
57 253123_at AT4G36000 [Pathogenesis-related thaumatin superfamily protein] -0.154 0.163
58 253722_at AT4G29190 AtC3H49, AtOZF2, Arabidopsis thaliana oxidation-related zinc finger 2, AtTZF3, OZF2, oxidation-related zinc finger 2, TZF3, tandem zinc finger 3 -0.153 0.487
59 267044_at AT2G34357 [ARM repeat superfamily protein] -0.152 0.099