4.0:Information of module
AVG 3 h
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006073 cellular glucan metabolic process BP 1.956e-03
GO:0044042 glucan metabolic process BP 1.956e-03
GO:0016144 S-glycoside biosynthetic process BP 2.543e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009873 ethylene-activated signaling pathway BP 1.490e-06
GO:0000160 phosphorelay signal transduction system BP 4.722e-06
GO:0071369 cellular response to ethylene stimulus BP 5.940e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
AVG 3 h 		Log2 signal ratio
seed germinating in countinuous light 24h SL
1 259348_at AT3G03770 [Leucine-rich repeat protein kinase family protein] 0.389 -0.501
2 263829_at AT2G40435 unknown 0.368 0.501
3 245341_at AT4G16447 unknown 0.245 0.277
4 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 0.209 -0.546
5 249531_at AT5G38770 AtGDU7, glutamine dumper 7, GDU7, glutamine dumper 7 0.198 -0.160
6 265665_at AT2G27420 [Cysteine proteinases superfamily protein] 0.193 0.767
7 252572_at AT3G45290 ATMLO3, MILDEW RESISTANCE LOCUS O 3, MLO3, MILDEW RESISTANCE LOCUS O 3 0.184 -0.842
8 251232_at AT3G62780 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.178 0.105
9 249191_at AT5G42760 [Leucine carboxyl methyltransferase] 0.174 -1.037
10 253516_at AT4G31360 [selenium binding] 0.167 1.030
11 248029_at AT5G55700 BAM4, beta-amylase 4, BMY6, BETA-AMYLASE 6 0.140 0.059
12 256275_at AT3G12110 ACT11, actin-11 0.140 0.535
13 245678_at AT1G56610 [Protein with RNI-like/FBD-like domains] 0.138 0.485
14 265312_at AT2G20240 TRM17, TON1 Recruiting Motif 17 0.137 0.646
15 246783_at AT5G27360 SFP2 0.134 0.265
16 259858_at AT1G68400 [leucine-rich repeat transmembrane protein kinase family protein] 0.128 -0.057
17 266798_at AT2G22850 AtbZIP6, basic leucine-zipper 6, bZIP6, basic leucine-zipper 6 0.127 -0.933
18 247877_at AT5G57740 XBAT32, XB3 ortholog 2 in Arabidopsis thaliana 0.125 -0.613
19 251116_at AT3G63470 scpl40, serine carboxypeptidase-like 40 0.121 -0.106
20 267284_at AT2G23700 unknown 0.119 -0.184
21 263650_at AT1G04360 [RING/U-box superfamily protein] 0.118 -0.666
22 247837_at AT5G57840 [HXXXD-type acyl-transferase family protein] 0.117 -0.508
23 258912_at AT3G06460 [GNS1/SUR4 membrane protein family] 0.115 0.461
24 258170_at AT3G21600 [Senescence/dehydration-associated protein-related] 0.113 -0.890
25 259172_at AT3G03630 CS26, cysteine synthase 26 0.112 1.609
26 246700_at AT5G28030 DES1, L-cysteine desulfhydrase 1 0.110 -1.318
27 252236_at AT3G49930 [C2H2 and C2HC zinc fingers superfamily protein] 0.107 -1.098
28 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.103 -0.801
29 264240_at AT1G54820 [Protein kinase superfamily protein] 0.100 -0.580
30 246008_at AT5G08320 unknown 0.099 0.621
31 247474_at AT5G62280 unknown -0.648 -0.158
32 247878_at AT5G57760 unknown -0.639 -0.150
33 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.557 -0.528
34 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 -0.510 -0.260
35 267337_at AT2G39980 [HXXXD-type acyl-transferase family protein] -0.464 1.129
36 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 -0.379 -0.907
37 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] -0.332 0.928
38 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 -0.233 0.393
39 251268_at AT3G62350 unknown -0.210 -0.857
40 253908_at AT4G27260 GH3.5, WES1 -0.207 -0.363
41 249941_at AT5G22270 unknown -0.205 -0.407
42 253067_at AT4G37780 ATMYB87, MYB87, myb domain protein 87 -0.197 -1.250
43 246935_at AT5G25350 EBF2, EIN3-binding F box protein 2 -0.195 0.443
44 251291_at AT3G61900 SAUR33, SMALL AUXIN UPREGULATED RNA 33 -0.193 -0.054
45 258474_at AT3G02650 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.184 0.805
46 253713_at AT4G29370 [Galactose oxidase/kelch repeat superfamily protein] -0.184 -0.077
47 253315_at AT4G33900 [Galactose oxidase/kelch repeat superfamily protein] -0.175 -0.128
48 254527_at AT4G19610 [nucleotide binding] -0.174 1.212
49 257184_at AT3G13090 ABCC6, ATP-binding cassette C6, ATMRP8, multidrug resistance-associated protein 8, MRP8, multidrug resistance-associated protein 8 -0.167 -0.339
50 247135_at AT5G66260 SAUR11, SMALL AUXIN UPREGULATED RNA 11 -0.165 0.181
51 262753_at AT1G16340 ATKDSA2, ATKSDA -0.161 0.188
52 251371_at AT3G60360 EDA14, EMBRYO SAC DEVELOPMENT ARREST 14, UTP11, U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11 -0.160 0.934
53 261876_at AT1G50590 [RmlC-like cupins superfamily protein] -0.160 -0.632
54 248782_at AT5G47340 [alpha/beta-Hydrolases superfamily protein] -0.157 -0.979
55 267250_at AT2G23060 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.156 -0.212
56 262810_at AT1G11710 [Pentatricopeptide repeat (PPR) superfamily protein] -0.155 -0.566
57 253123_at AT4G36000 [Pathogenesis-related thaumatin superfamily protein] -0.154 -0.407
58 253722_at AT4G29190 AtC3H49, AtOZF2, Arabidopsis thaliana oxidation-related zinc finger 2, AtTZF3, OZF2, oxidation-related zinc finger 2, TZF3, tandem zinc finger 3 -0.153 0.176
59 267044_at AT2G34357 [ARM repeat superfamily protein] -0.152 0.990