4.0:Information of module
Mutant arf19-1 (IAA)
In comparison with Chemically help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010054 trichoblast differentiation BP 8.746e-08
GO:0010053 root epidermal cell differentiation BP 1.561e-07
GO:0090627 plant epidermal cell differentiation BP 2.187e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019684 photosynthesis, light reaction BP 3.234e-20
GO:0015979 photosynthesis BP 6.236e-19
GO:0010207 photosystem II assembly BP 2.518e-14
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Mutant arf19-1 (IAA)		 Log2 signal ratio
Chemically
1 264404_at AT2G25160 CYP82F1, cytochrome P450, family 82, subfamily F, polypeptide 1 0.461 -0.098
2 249202_at AT5G42580 CYP705A12, cytochrome P450, family 705, subfamily A, polypeptide 12 0.455 -0.046
3 249174_at AT5G42900 COR27, cold regulated gene 27 0.441 0.018
4 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] 0.402 0.049
5 253515_at AT4G31320 SAUR37, SMALL AUXIN UPREGULATED RNA 37 0.344 -0.142
6 244966_at ATCG00600 PETG 0.331 0.066
7 266191_at AT2G39040 [Peroxidase superfamily protein] 0.324 -0.164
8 257985_at AT3G20810 JMJ30, Jumonji C domain-containing protein 30, JMJD5, jumonji domain containing 5 0.322 0.067
9 255934_at AT1G12740 CYP87A2, cytochrome P450, family 87, subfamily A, polypeptide 2 0.297 -0.180
10 256060_at AT1G07050 [CCT motif family protein] 0.291 -0.024
11 250869_at AT5G03840 TFL-1, TERMINAL FLOWER 1, TFL1, TERMINAL FLOWER 1 0.287 0.090
12 259388_at AT1G13420 ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ST4B, sulfotransferase 4B 0.276 -0.186
13 254606_at AT4G19030 AT-NLM1, ATNLM1, NOD26-LIKE MAJOR INTRINSIC PROTEIN 1, NIP1;1, NOD26-LIKE INTRINSIC PROTEIN 1;1, NLM1, NOD26-like major intrinsic protein 1 0.272 -0.066
14 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H 0.272 0.067
15 259244_at AT3G07650 BBX7, B-box domain protein 7, COL9, CONSTANS-like 9 0.266 0.006
16 253070_at AT4G37850 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.265 -0.022
17 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 0.254 -0.658
18 245967_at AT5G19800 [hydroxyproline-rich glycoprotein family protein] 0.252 -0.279
19 261550_at AT1G63450 RHS8, root hair specific 8, XUT1, XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1 0.252 -0.072
20 252488_at AT3G46700 [UDP-Glycosyltransferase superfamily protein] 0.249 -0.141
21 248978_at AT5G45070 AtPP2-A8, phloem protein 2-A8, PP2-A8, phloem protein 2-A8 0.247 -0.042
22 263376_at AT2G20520 FLA6, FASCICLIN-like arabinogalactan 6 0.237 -0.780
23 263042_at AT1G23340 unknown 0.232 0.033
24 259576_at AT1G35330 [RING/U-box superfamily protein] 0.230 -0.227
25 259964_at AT1G53680 ATGSTU28, glutathione S-transferase TAU 28, GSTU28, glutathione S-transferase TAU 28 0.229 -0.157
26 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 0.229 -0.190
27 261647_at AT1G27740 RSL4, root hair defective 6-like 4 0.227 -0.237
28 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 0.227 -0.055
29 256774_at AT3G13760 [Cysteine/Histidine-rich C1 domain family protein] 0.224 -0.050
30 256875_at AT3G26330 CYP71B37, cytochrome P450, family 71, subfamily B, polypeptide 37 0.220 -0.084
31 258832_at AT3G07070 [Protein kinase superfamily protein] 0.217 -0.198
32 251410_at AT3G60280 UCC3, uclacyanin 3 0.215 -0.098
33 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.213 0.071
34 251723_at AT3G56230 [BTB/POZ domain-containing protein] 0.206 -0.270
35 244973_at ATCG00690 PSBT, photosystem II reaction center protein T, PSBTC 0.206 0.064
36 246331_at AT3G44820 [Phototropic-responsive NPH3 family protein] 0.200 0.054
37 248728_at AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 0.197 -0.106
38 246652_at AT5G35190 EXT13, extensin 13 0.194 -0.909
39 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] 0.193 -0.284
40 244982_at ATCG00780 RPL14, ribosomal protein L14 0.193 0.086
41 261541_at AT1G63600 [Receptor-like protein kinase-related family protein] 0.193 -0.163
42 245657_at AT1G56720 [Protein kinase superfamily protein] 0.189 -0.065
43 247668_at AT5G60100 APRR3, pseudo-response regulator 3, PRR3, pseudo-response regulator 3 0.187 0.058
44 261504_at AT1G71692 AGL12, AGAMOUS-like 12, XAL1, XAANTAL1 0.185 -0.051
45 246872_at AT5G26080 [proline-rich family protein] 0.185 -0.082
46 263998_at AT2G22510 [hydroxyproline-rich glycoprotein family protein] 0.183 -0.142
47 250674_at AT5G07130 LAC13, laccase 13 0.183 0.045
48 250987_at AT5G02860 [Pentatricopeptide repeat (PPR) superfamily protein] 0.182 -0.053
49 247577_at AT5G61290 [Flavin-binding monooxygenase family protein] 0.179 0.124
50 255005_at AT4G09990 GXM2, glucuronoxylan methyltransferase 2 0.176 -0.212
51 246826_at AT5G26310 UGT72E3 0.171 -0.039
52 250905_at AT5G03640 [Protein kinase superfamily protein] 0.164 -0.100
53 254629_at AT4G18425 unknown 0.159 -0.019
54 247867_at AT5G57630 CIPK21, CBL-interacting protein kinase 21, SnRK3.4, SNF1-RELATED PROTEIN KINASE 3.4 0.158 0.002
55 266596_at AT2G46150 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.157 0.072
56 254772_at AT4G13390 EXT12, extensin 12 0.157 -0.132
57 264053_at AT2G22560 NET2D, Networked 2D 0.155 -0.061
58 262564_at AT1G34330 [pseudogene] 0.155 -0.246
59 248790_at AT5G47450 ATTIP2;3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, DELTA-TIP3, DELTA-TONOPLAST INTRINSIC PROTEIN 3, TIP2;3, tonoplast intrinsic protein 2;3 0.154 -0.519
60 259325_at AT3G05320 [O-fucosyltransferase family protein] 0.151 0.063
61 253627_at AT4G30650 [Low temperature and salt responsive protein family] 0.147 0.003
62 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE 0.146 -0.138
63 266913_at AT2G45890 ATROPGEF4, RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4, GEF4, guanine exchange factor 4, RHS11, ROOT HAIR SPECIFIC 11, ROPGEF4, ROP (rho of plants) guanine nucleotide exchange factor 4 0.143 -0.255
64 247877_at AT5G57740 XBAT32, XB3 ortholog 2 in Arabidopsis thaliana 0.139 -0.022
65 255913_at AT1G66980 GDPDL2, Glycerophosphodiester phosphodiesterase (GDPD) like 2, SNC4, suppressor of npr1-1 constitutive 4 0.138 0.008
66 247525_at AT5G61380 APRR1, AtTOC1, TIMING OF CAB EXPRESSION 1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TOC1, TIMING OF CAB EXPRESSION 1 0.136 -0.017
67 246888_at AT5G26270 unknown 0.135 -0.092
68 259285_at AT3G11460 MEF10, mitochondrial RNA editing factor 10 0.134 0.043
69 245113_at AT2G41660 MIZ1, mizu-kussei 1 0.133 -0.102
70 253605_at AT4G30990 [ARM repeat superfamily protein] 0.133 0.042
71 256013_at AT1G19270 DA1, DA1 0.131 0.042
72 265405_at AT2G16750 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] 0.130 -0.144
73 252248_at AT3G49750 AtRLP44, receptor like protein 44, RLP44, receptor like protein 44 0.129 0.012
74 267311_at AT2G34670 unknown 0.127 -0.017
75 261106_at AT1G62990 IXR11, KNAT7, KNOTTED-like homeobox of Arabidopsis thaliana 7 0.126 -0.033
76 264518_at AT1G09980 [Putative serine esterase family protein] 0.125 -0.004
77 247912_at AT5G57480 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.125 0.062
78 264466_at AT1G10380 [Putative membrane lipoprotein] 0.123 0.087
79 255175_at AT4G07960 ATCSLC12, Cellulose-synthase-like C12, CSLC12, CELLULOSE-SYNTHASE LIKE C12, CSLC12, Cellulose-synthase-like C12 0.123 -0.145
80 249868_at AT5G23030 TET12, tetraspanin12 0.123 -0.195
81 249358_at AT5G40510 [Sucrase/ferredoxin-like family protein] 0.122 -0.168
82 246913_at AT5G25830 GATA12, GATA transcription factor 12 0.122 -0.093
83 262264_at AT1G42470 [Patched family protein] 0.121 -0.002
84 264052_at AT2G22330 CYP79B3, cytochrome P450, family 79, subfamily B, polypeptide 3 0.121 -0.018
85 264226_at AT1G67510 [Leucine-rich repeat protein kinase family protein] 0.121 -0.061
86 267094_at AT2G38080 ATLMCO4, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, IRX12, IRREGULAR XYLEM 12, LAC4, LACCASE 4, LMCO4, LACCASE-LIKE MULTICOPPER OXIDASE 4 0.120 -0.069
87 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.119 0.113
88 265031_at AT1G61590 [Protein kinase superfamily protein] 0.118 -0.213
89 249814_at AT5G23840 [MD-2-related lipid recognition domain-containing protein] 0.118 -0.064
90 250173_at AT5G14340 AtMYB40, myb domain protein 40, MYB40, myb domain protein 40 0.118 -0.019
91 256010_at AT1G19220 ARF11, AUXIN RESPONSE FACTOR11, ARF19, auxin response factor 19, IAA22, indole-3-acetic acid inducible 22 -0.859 0.040
92 247869_at AT5G57520 ATZFP2, ZINC FINGER PROTEIN 2, ZFP2, zinc finger protein 2 -0.731 0.003
93 259027_at AT3G09280 unknown -0.495 -0.004
94 249939_at AT5G22430 [Pollen Ole e 1 allergen and extensin family protein] -0.441 0.174
95 249992_at AT5G18560 PUCHI -0.413 0.425
96 267250_at AT2G23060 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.385 0.216
97 254323_at AT4G22620 SAUR34, SMALL AUXIN UPREGULATED RNA 34 -0.372 0.120
98 254459_at AT4G21200 ATGA2OX8, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, GA2OX8, gibberellin 2-oxidase 8 -0.346 0.263
99 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 -0.339 -0.094
100 254809_at AT4G12410 SAUR35, SMALL AUXIN UPREGULATED RNA 35 -0.336 0.248
101 263935_at AT2G35930 AtPUB23, PUB23, plant U-box 23 -0.332 -0.031
102 252279_at AT3G49700 ACS9, 1-aminocyclopropane-1-carboxylate synthase 9, AtACS9, ETO3, ETHYLENE OVERPRODUCING 3 -0.305 -0.073
103 260152_at AT1G52830 IAA6, indole-3-acetic acid 6, SHY1, SHORT HYPOCOTYL 1 -0.284 0.121
104 267357_at AT2G40000 ATHSPRO2, ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, HSPRO2, ortholog of sugar beet HS1 PRO-1 2 -0.269 0.009
105 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 -0.263 0.082
106 253910_at AT4G27290 [S-locus lectin protein kinase family protein] -0.260 0.050
107 245416_at AT4G17350 unknown -0.256 0.258
108 261470_at AT1G28370 ATERF11, ERF DOMAIN PROTEIN 11, ERF11, ERF domain protein 11 -0.256 0.060
109 264788_at AT2G17880 DJC24, DNA J protein C24 -0.251 -0.021
110 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 -0.242 -0.137
111 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.242 0.023
112 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.239 -0.065
113 252103_at AT3G51410 unknown -0.232 0.077
114 257386_at AT2G42440 ASL15, ASYMMETRIC LEAVES 2-like 15, LBD17, LOB domain-containing protein 17 -0.228 0.325
115 257049_at AT3G15250 unknown -0.215 0.060
116 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 -0.212 0.131
117 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 -0.211 -0.118
118 260614_at AT1G53390 ABCG24, ATP-binding cassette G24 -0.210 -0.028
119 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.209 0.094
120 258181_at AT3G21670 AtNPF6.4, NPF6.4, NRT1/ PTR family 6.4 -0.204 -0.212
121 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.200 -0.041
122 248759_at AT5G47610 [RING/U-box superfamily protein] -0.198 -0.093
123 253791_at AT4G28640 IAA11, indole-3-acetic acid inducible 11 -0.196 0.156
124 253012_at AT4G37900 unknown -0.196 0.067
125 259927_at AT1G75100 JAC1, J-domain protein required for chloroplast accumulation response 1 -0.195 -0.068
126 259445_at AT1G02400 ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1, GA2OX6, gibberellin 2-oxidase 6 -0.193 0.110
127 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 -0.192 -0.077
128 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 -0.191 -0.087
129 246000_at AT5G20820 SAUR76, SMALL AUXIN UPREGULATED RNA 76 -0.191 0.077
130 252517_at AT3G46340 [Leucine-rich repeat protein kinase family protein] -0.187 0.046
131 254250_at AT4G23290 CRK21, cysteine-rich RLK (RECEPTOR-like protein kinase) 21 -0.186 0.005
132 259223_at AT3G03660 WOX11, WUSCHEL related homeobox 11 -0.182 0.140
133 246200_at AT4G37240 unknown -0.181 -0.086
134 259015_at AT3G07350 unknown -0.177 -0.018
135 253305_at AT4G33666 unknown -0.173 -0.058
136 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 -0.172 -0.141
137 248167_at AT5G54530 unknown -0.171 0.067
138 247255_at AT5G64780 [Uncharacterised conserved protein UCP009193] -0.169 0.039
139 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 -0.166 -0.024
140 249839_at AT5G23405 [HMG-box (high mobility group) DNA-binding family protein] -0.165 0.016
141 247047_at AT5G66650 unknown -0.165 -0.190
142 262635_at AT1G06570 HPD, 4-hydroxyphenylpyruvate dioxygenase, HPPD, 4-hydroxyphenylpyruvate dioxygenase, PDS1, phytoene desaturation 1 -0.163 -0.021
143 251009_at AT5G02640 unknown -0.163 -0.003
144 263211_at AT1G10460 GLP7, germin-like protein 7 -0.163 0.047
145 261393_at AT1G79580 ANAC033, Arabidopsis NAC domain containing protein 33, SMB, SOMBRERO, URP7, UAS-TAGGED ROOT PATTERNING7 -0.162 0.069
146 263436_at AT2G28690 unknown -0.159 0.192
147 266737_at AT2G47140 AtSDR5, SDR5, short-chain dehydrogenase reductase 5 -0.158 0.173
148 260568_at AT2G43570 CHI, chitinase, putative -0.155 -0.034
149 254916_at AT4G11340 [Disease resistance protein (TIR-NBS-LRR class) family] -0.154 0.041
150 260287_at AT1G80440 KFB20, Kelch repeat F-box 20, KMD1, KISS ME DEADLY 1 -0.152 -0.032
151 249035_at AT5G44190 ATGLK2, GLK2, GOLDEN2-like 2, GPRI2, GBF'S PRO-RICH REGION-INTERACTING FACTOR 2 -0.151 -0.068
152 250803_at AT5G04980 [DNAse I-like superfamily protein] -0.150 0.064
153 257951_at AT3G21700 ATSGP2, SGP2 -0.148 -0.031
154 246069_at AT5G20220 [zinc knuckle (CCHC-type) family protein] -0.148 -0.023
155 266717_at AT2G46735 unknown -0.144 -0.059
156 259275_at AT3G01060 unknown -0.144 0.031
157 245705_at AT5G04390 [C2H2-type zinc finger family protein] -0.143 -0.038
158 260470_at AT1G11125 unknown -0.142 0.075
159 263909_at AT2G36490 AtROS1, DML1, demeter-like 1, ROS1, REPRESSOR OF SILENCING1 -0.141 -0.009
160 266368_at AT2G41380 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.141 0.303
161 256799_at AT3G18560 unknown -0.140 -0.023
162 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.136 -0.016
163 245208_at AT5G12330 LRP1, LATERAL ROOT PRIMORDIUM 1 -0.133 0.198
164 259943_at AT1G71480 [Nuclear transport factor 2 (NTF2) family protein] -0.131 0.003
165 248392_at AT5G52050 [MATE efflux family protein] -0.131 0.123
166 252172_at AT3G50640 unknown -0.129 -0.097
167 258919_at AT3G10525 LGO, LOSS OF GIANT CELLS FROM ORGANS, SMR1, SIAMESE RELATED 1 -0.128 -0.007
168 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 -0.128 -0.030
169 259791_at AT1G29700 [Metallo-hydrolase/oxidoreductase superfamily protein] -0.128 -0.047
170 263151_at AT1G54120 unknown -0.126 -0.025
171 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 -0.126 0.191
172 267005_at AT2G34460 [NAD(P)-binding Rossmann-fold superfamily protein] -0.126 0.010
173 245877_at AT1G26220 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.126 -0.012
174 254015_at AT4G26140 BGAL12, beta-galactosidase 12 -0.124 0.125
175 263142_at AT1G65230 [Uncharacterized conserved protein (DUF2358)] -0.124 -0.019
176 253197_at AT4G35250 HCF244, high chlorophyll fluorescence phenotype 244 -0.124 -0.017
177 265680_at AT2G32150 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.124 -0.061
178 252133_at AT3G50900 unknown -0.122 0.048
179 262416_at AT1G49390 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.122 0.056