4.0:Information of module
WR 35S 3h BL
In comparison with root epidermis and lateral root cap -S help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019684 photosynthesis, light reaction BP 2.785e-32
GO:0015979 photosynthesis BP 3.188e-30
GO:0006364 rRNA processing BP 3.230e-24
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006412 translation BP 1.400e-110
GO:0001510 RNA methylation BP 1.435e-103
GO:0009451 RNA modification BP 3.167e-80
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WR 35S 3h BL		 Log2 signal ratio
root epidermis and lateral root cap -S
1 AT5G20630 AT5G20630 ATGER3, ARABIDOPSIS THALIANA GERMIN 3, GER3, germin 3, GLP3, GERMIN-LIKE PROTEIN 3, GLP3A, GLP3B 6.938 -0.064
2 AT3G14420 AT3G14420 GOX1, glycolate oxidase 1 6.072 no data
3 AT1G31580 AT1G31580 CXC750, ECS1 5.384 -0.009
4 AT3G05730 AT3G05730 [LOCATED IN: endomembrane system] 5.375 -0.021
5 AT4G17090 AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase 5.367 -0.198
6 AT5G38430 AT5G38430 RBCS1B, Rubisco small subunit 1B 5.048 no data
7 AT3G16660 AT3G16660 [Pollen Ole e 1 allergen and extensin family protein] 4.989 no data
8 AT3G01500 AT3G01500 ATBCA1, BETA CARBONIC ANHYDRASE 1, ATSABP3, ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, CA1, carbonic anhydrase 1, SABP3, SALICYLIC ACID-BINDING PROTEIN 3 4.853 0.055
9 AT5G38420 AT5G38420 RBCS2B, Rubisco small subunit 2B 4.678 no data
10 AT1G11925 AT1G11925 [Stigma-specific Stig1 family protein] 4.673 no data
11 AT2G10940 AT2G10940 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 4.578 -0.222
12 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 4.548 -0.089
13 AT1G23130 AT1G23130 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 4.502 -0.062
14 AT5G25610 AT5G25610 ATRD22, RD22, RESPONSIVE TO DESSICATION 22 4.467 -0.028
15 AT5G65730 AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 4.432 0.031
16 AT5G38410 AT5G38410 RBCS3B, Rubisco small subunit 3B 4.323 no data
17 AT3G16670 AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] 4.310 0.015
18 AT5G14740 AT5G14740 BETA CA2, BETA CARBONIC ANHYDRASE 2, CA18, CARBONIC ANHYDRASE 18, CA2, carbonic anhydrase 2 4.292 -0.213
19 AT1G26380 AT1G26380 [FAD-binding Berberine family protein] 4.227 -0.209
20 AT3G46780 AT3G46780 PTAC16, plastid transcriptionally active 16 4.222 -0.031
21 AT4G37925 AT4G37925 NDH-M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex, NdhM, NADH dehydrogenase-like complex M 4.158 no data
22 AT4G21200 AT4G21200 ATGA2OX8, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, GA2OX8, gibberellin 2-oxidase 8 4.087 -0.028
23 AT5G26000 AT5G26000 AtTGG1, BGLU38, BETA GLUCOSIDASE 38, TGG1, thioglucoside glucohydrolase 1 4.039 no data
24 AT3G23250 AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 4.000 -0.098
25 AT1G48325 AT1G48325 [Expressed protein] 3.891 no data
26 AT2G05070 AT2G05070 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.2, photosystem II light harvesting complex gene 2.2 3.878 no data
27 AT2G43890 AT2G43890 [Pectin lyase-like superfamily protein] 3.849 0.359
28 AT2G32690 AT2G32690 ATGRP23, GLYCINE-RICH PROTEIN 23, GRP23, glycine-rich protein 23 3.822 -0.079
29 AT3G04290 AT3G04290 ATLTL1, LTL1, Li-tolerant lipase 1 3.800 -0.058
30 AT3G54050 AT3G54050 HCEF1, high cyclic electron flow 1 3.759 -0.091
31 AT4G28780 AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] 3.750 -0.009
32 AT1G66600 AT1G66600 ABO3, ABA overly sensitive mutant 3, ATWRKY63, WRKY63, WRKY DNA-binding protein 63 3.668 no data
33 AT1G55260 AT1G55260 LTPG6, glycosylphosphatidylinositol-anchored lipid protein transfer 6 3.650 0.045
34 AT1G64770 AT1G64770 NDF2, NDH-dependent cyclic electron flow 1, NDH45, NAD(P)H DEHYDROGENASE SUBUNIT 45, PnsB2, Photosynthetic NDH subcomplex B 2 3.600 -0.037
35 AT1G21500 AT1G21500 unknown 3.589 0.100
36 AT4G32950 AT4G32950 [Protein phosphatase 2C family protein] 3.534 -0.125
37 AT1G60470 AT1G60470 AtGolS4, galactinol synthase 4, GolS4, galactinol synthase 4 3.523 -0.038
38 AT3G49700 AT3G49700 ACS9, 1-aminocyclopropane-1-carboxylate synthase 9, AtACS9, ETO3, ETHYLENE OVERPRODUCING 3 3.500 -0.070
39 AT2G34430 AT2G34430 LHB1B1, light-harvesting chlorophyll-protein complex II subunit B1, LHCB1.4, LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX II SUBUNIT B1 3.483 no data
40 AT1G32060 AT1G32060 PRK, phosphoribulokinase 3.433 -0.096
41 AT1G32080 AT1G32080 AtLrgB, LrgB 3.415 -0.234
42 AT2G21330 AT2G21330 AtFBA1, FBA1, fructose-bisphosphate aldolase 1 3.399 -0.208
43 AT4G37220 AT4G37220 [Cold acclimation protein WCOR413 family] 3.385 -0.038
44 AT1G03935 AT1G03935 [snoRNA] 3.326 no data
45 AT4G23170 AT4G23170 CRK9, CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 9, EP1 3.315 no data
46 AT2G24270 AT2G24270 ALDH11A3, aldehyde dehydrogenase 11A3 3.296 0.205
47 AT2G05540 AT2G05540 [Glycine-rich protein family] 3.277 0.031
48 AT5G54700 AT5G54700 [Ankyrin repeat family protein] 3.260 -0.157
49 AT2G42220 AT2G42220 [Rhodanese/Cell cycle control phosphatase superfamily protein] 3.232 0.112
50 AT1G47603 AT1G47603 ATPUP19, purine permease 19, PUP19, purine permease 19 3.229 no data
51 AT1G68530 AT1G68530 CER6, ECERIFERUM 6, CUT1, CUTICULAR 1, G2, KCS6, 3-ketoacyl-CoA synthase 6, POP1, POLLEN-PISTIL INCOMPATIBILITY 1 3.137 -0.099
52 AT3G48740 AT3G48740 AtSWEET11, SWEET11 3.127 0.027
53 AT1G29920 AT1G29920 AB165, CAB2, chlorophyll A/B-binding protein 2, LHCB1.1, LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1 3.127 no data
54 AT1G06360 AT1G06360 [Fatty acid desaturase family protein] 3.116 no data
55 AT5G52390 AT5G52390 [PAR1 protein] 3.111 -0.085
56 AT4G04930 AT4G04930 DES-1-LIKE -4.428 -0.023
57 AT1G06990 AT1G06990 [GDSL-like Lipase/Acylhydrolase superfamily protein] -3.548 -0.104
58 AT1G56160 AT1G56160 ATMYB72, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, MYB72, myb domain protein 72 -3.305 -0.076
59 AT1G76220 AT1G76220 unknown -3.229 -0.194
60 AT3G20140 AT3G20140 CYP705A23, cytochrome P450, family 705, subfamily A, polypeptide 23 -3.206 0.080
61 AT3G09280 AT3G09280 unknown -3.200 -0.018
62 AT5G57785 AT5G57785 unknown -3.152 -0.855
63 AT5G22580 AT5G22580 [Stress responsive A/B Barrel Domain] -3.136 0.275
64 AT5G26070 AT5G26070 [hydroxyproline-rich glycoprotein family protein] -3.045 -0.040
65 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -2.959 -0.193
66 AT4G31940 AT4G31940 CYP82C4, cytochrome P450, family 82, subfamily C, polypeptide 4 -2.920 -0.024
67 AT3G62760 AT3G62760 ATGSTF13 -2.912 0.285
68 AT1G70260 AT1G70260 UMAMIT36, Usually multiple acids move in and out Transporters 36 -2.849 no data
69 AT2G46850 AT2G46850 [Protein kinase superfamily protein] -2.727 -0.169
70 AT3G61880 AT3G61880 CYP78A9, cytochrome p450 78a9 -2.726 0.252
71 AT4G25220 AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -2.683 0.300
72 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -2.636 no data
73 AT1G05835 AT1G05835 [PHD finger protein] -2.454 no data
74 AT1G76620 AT1G76620 unknown -2.436 0.017
75 AT5G48130 AT5G48130 [Phototropic-responsive NPH3 family protein] -2.424 -0.238
76 AT3G12900 AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -2.399 -0.016
77 AT1G53130 AT1G53130 GRI, GRIM REAPER -2.316 no data
78 AT5G66800 AT5G66800 unknown -2.293 0.018
79 AT2G46990 AT2G46990 IAA20, indole-3-acetic acid inducible 20 -2.157 0.261
80 AT4G15360 AT4G15360 CYP705A3, cytochrome P450, family 705, subfamily A, polypeptide 3 -2.114 -0.241
81 AT2G41990 AT2G41990 unknown -2.110 -0.019
82 AT3G58000 AT3G58000 [VQ motif-containing protein] -2.072 -0.212
83 AT4G33800 AT4G33800 unknown -1.992 0.094
84 AT1G02575 AT1G02575 unknown -1.968 -0.226
85 AT5G07190 AT5G07190 ATS3, seed gene 3 -1.952 -0.110
86 AT5G38200 AT5G38200 [Class I glutamine amidotransferase-like superfamily protein] -1.936 no data
87 AT3G52440 AT3G52440 [Dof-type zinc finger DNA-binding family protein] -1.935 no data
88 AT4G27170 AT4G27170 AT2S4, SESA4, seed storage albumin 4 -1.899 0.021
89 AT5G66590 AT5G66590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -1.892 -0.188
90 AT2G25130 AT2G25130 [ARM repeat superfamily protein] -1.858 no data
91 AT1G78370 AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 -1.840 -0.036
92 AT3G25655 AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 -1.839 -0.697
93 AT4G28850 AT4G28850 ATXTH26, XTH26, xyloglucan endotransglucosylase/hydrolase 26 -1.817 -0.098
94 AT3G58060 AT3G58060 [Cation efflux family protein] -1.814 -0.023
95 AT5G65300 AT5G65300 unknown -1.802 -0.052
96 AT3G50750 AT3G50750 BEH1, BES1/BZR1 homolog 1 -1.793 -0.180
97 AT4G19690 AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 -1.788 -0.074
98 AT1G64930 AT1G64930 CYP89A7, cytochrome P450, family 87, subfamily A, polypeptide 7 -1.786 -0.103
99 AT3G27415 AT3G27415 unknown -1.786 no data
100 AT3G59440 AT3G59440 [Calcium-binding EF-hand family protein] -1.770 -0.152
101 AT2G45080 AT2G45080 cycp3;1, cyclin p3;1 -1.757 -0.080
102 AT3G16300 AT3G16300 [Uncharacterised protein family (UPF0497)] -1.745 no data
103 AT5G09500 AT5G09500 [Ribosomal protein S19 family protein] -1.741 0.058
104 AT4G01680 AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -1.733 -0.169
105 AT5G07550 AT5G07550 ATGRP19, GRP19, glycine-rich protein 19 -1.709 -0.107
106 AT4G33880 AT4G33880 RSL2, ROOT HAIR DEFECTIVE 6-LIKE 2 -1.709 no data
107 AT3G12820 AT3G12820 AtMYB10, myb domain protein 10, MYB10, myb domain protein 10 -1.684 -0.066
108 AT1G26770 AT1G26770 AT-EXP10, ARABIDOPSIS THALIANA EXPANSIN 10, ATEXP10, ARABIDOPSIS THALIANA EXPANSIN 10, ATEXPA10, expansin A10, ATHEXP ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, EXP10, EXPANSIN 10, EXPA10, expansin A10 -1.645 -0.022
109 AT3G30180 AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -1.641 -0.138