4.0:Information of module
WR 35S 3h BL
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019684 photosynthesis, light reaction BP 2.785e-32
GO:0015979 photosynthesis BP 3.188e-30
GO:0006364 rRNA processing BP 3.230e-24
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006412 translation BP 1.400e-110
GO:0001510 RNA methylation BP 1.435e-103
GO:0009451 RNA modification BP 3.167e-80
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WR 35S 3h BL		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 AT5G20630 AT5G20630 ATGER3, ARABIDOPSIS THALIANA GERMIN 3, GER3, germin 3, GLP3, GERMIN-LIKE PROTEIN 3, GLP3A, GLP3B 6.938 0.739
2 AT3G14420 AT3G14420 GOX1, glycolate oxidase 1 6.072 no data
3 AT1G31580 AT1G31580 CXC750, ECS1 5.384 0.555
4 AT3G05730 AT3G05730 [LOCATED IN: endomembrane system] 5.375 -0.826
5 AT4G17090 AT4G17090 AtBAM3, BAM3, BETA-AMYLASE 3, BMY8, BETA-AMYLASE 8, CT-BMY, chloroplast beta-amylase 5.367 -1.436
6 AT5G38430 AT5G38430 RBCS1B, Rubisco small subunit 1B 5.048 no data
7 AT3G16660 AT3G16660 [Pollen Ole e 1 allergen and extensin family protein] 4.989 no data
8 AT3G01500 AT3G01500 ATBCA1, BETA CARBONIC ANHYDRASE 1, ATSABP3, ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, CA1, carbonic anhydrase 1, SABP3, SALICYLIC ACID-BINDING PROTEIN 3 4.853 -0.012
9 AT5G38420 AT5G38420 RBCS2B, Rubisco small subunit 2B 4.678 no data
10 AT1G11925 AT1G11925 [Stigma-specific Stig1 family protein] 4.673 no data
11 AT2G10940 AT2G10940 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 4.578 0.427
12 AT3G47340 AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 4.548 -0.344
13 AT1G23130 AT1G23130 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 4.502 -0.199
14 AT5G25610 AT5G25610 ATRD22, RD22, RESPONSIVE TO DESSICATION 22 4.467 0.827
15 AT5G65730 AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 4.432 -1.168
16 AT5G38410 AT5G38410 RBCS3B, Rubisco small subunit 3B 4.323 no data
17 AT3G16670 AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] 4.310 -0.244
18 AT5G14740 AT5G14740 BETA CA2, BETA CARBONIC ANHYDRASE 2, CA18, CARBONIC ANHYDRASE 18, CA2, carbonic anhydrase 2 4.292 -0.851
19 AT1G26380 AT1G26380 [FAD-binding Berberine family protein] 4.227 -0.286
20 AT3G46780 AT3G46780 PTAC16, plastid transcriptionally active 16 4.222 0.099
21 AT4G37925 AT4G37925 NDH-M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex, NdhM, NADH dehydrogenase-like complex M 4.158 no data
22 AT4G21200 AT4G21200 ATGA2OX8, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, GA2OX8, gibberellin 2-oxidase 8 4.087 -0.710
23 AT5G26000 AT5G26000 AtTGG1, BGLU38, BETA GLUCOSIDASE 38, TGG1, thioglucoside glucohydrolase 1 4.039 no data
24 AT3G23250 AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 4.000 0.416
25 AT1G48325 AT1G48325 [Expressed protein] 3.891 no data
26 AT2G05070 AT2G05070 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.2, photosystem II light harvesting complex gene 2.2 3.878 no data
27 AT2G43890 AT2G43890 [Pectin lyase-like superfamily protein] 3.849 -0.246
28 AT2G32690 AT2G32690 ATGRP23, GLYCINE-RICH PROTEIN 23, GRP23, glycine-rich protein 23 3.822 0.430
29 AT3G04290 AT3G04290 ATLTL1, LTL1, Li-tolerant lipase 1 3.800 1.147
30 AT3G54050 AT3G54050 HCEF1, high cyclic electron flow 1 3.759 0.981
31 AT4G28780 AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] 3.750 -0.549
32 AT1G66600 AT1G66600 ABO3, ABA overly sensitive mutant 3, ATWRKY63, WRKY63, WRKY DNA-binding protein 63 3.668 no data
33 AT1G55260 AT1G55260 LTPG6, glycosylphosphatidylinositol-anchored lipid protein transfer 6 3.650 0.265
34 AT1G64770 AT1G64770 NDF2, NDH-dependent cyclic electron flow 1, NDH45, NAD(P)H DEHYDROGENASE SUBUNIT 45, PnsB2, Photosynthetic NDH subcomplex B 2 3.600 1.203
35 AT1G21500 AT1G21500 unknown 3.589 0.012
36 AT4G32950 AT4G32950 [Protein phosphatase 2C family protein] 3.534 -0.805
37 AT1G60470 AT1G60470 AtGolS4, galactinol synthase 4, GolS4, galactinol synthase 4 3.523 -0.918
38 AT3G49700 AT3G49700 ACS9, 1-aminocyclopropane-1-carboxylate synthase 9, AtACS9, ETO3, ETHYLENE OVERPRODUCING 3 3.500 -0.883
39 AT2G34430 AT2G34430 LHB1B1, light-harvesting chlorophyll-protein complex II subunit B1, LHCB1.4, LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX II SUBUNIT B1 3.483 no data
40 AT1G32060 AT1G32060 PRK, phosphoribulokinase 3.433 0.716
41 AT1G32080 AT1G32080 AtLrgB, LrgB 3.415 -0.584
42 AT2G21330 AT2G21330 AtFBA1, FBA1, fructose-bisphosphate aldolase 1 3.399 1.447
43 AT4G37220 AT4G37220 [Cold acclimation protein WCOR413 family] 3.385 -0.828
44 AT1G03935 AT1G03935 [snoRNA] 3.326 no data
45 AT4G23170 AT4G23170 CRK9, CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 9, EP1 3.315 no data
46 AT2G24270 AT2G24270 ALDH11A3, aldehyde dehydrogenase 11A3 3.296 0.244
47 AT2G05540 AT2G05540 [Glycine-rich protein family] 3.277 -0.688
48 AT5G54700 AT5G54700 [Ankyrin repeat family protein] 3.260 -0.883
49 AT2G42220 AT2G42220 [Rhodanese/Cell cycle control phosphatase superfamily protein] 3.232 0.009
50 AT1G47603 AT1G47603 ATPUP19, purine permease 19, PUP19, purine permease 19 3.229 no data
51 AT1G68530 AT1G68530 CER6, ECERIFERUM 6, CUT1, CUTICULAR 1, G2, KCS6, 3-ketoacyl-CoA synthase 6, POP1, POLLEN-PISTIL INCOMPATIBILITY 1 3.137 -0.125
52 AT3G48740 AT3G48740 AtSWEET11, SWEET11 3.127 -0.070
53 AT1G29920 AT1G29920 AB165, CAB2, chlorophyll A/B-binding protein 2, LHCB1.1, LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1 3.127 no data
54 AT1G06360 AT1G06360 [Fatty acid desaturase family protein] 3.116 no data
55 AT5G52390 AT5G52390 [PAR1 protein] 3.111 -0.284
56 AT4G04930 AT4G04930 DES-1-LIKE -4.428 -0.249
57 AT1G06990 AT1G06990 [GDSL-like Lipase/Acylhydrolase superfamily protein] -3.548 -0.230
58 AT1G56160 AT1G56160 ATMYB72, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, MYB72, myb domain protein 72 -3.305 -0.956
59 AT1G76220 AT1G76220 unknown -3.229 -0.174
60 AT3G20140 AT3G20140 CYP705A23, cytochrome P450, family 705, subfamily A, polypeptide 23 -3.206 -0.923
61 AT3G09280 AT3G09280 unknown -3.200 -1.014
62 AT5G57785 AT5G57785 unknown -3.152 0.028
63 AT5G22580 AT5G22580 [Stress responsive A/B Barrel Domain] -3.136 -0.298
64 AT5G26070 AT5G26070 [hydroxyproline-rich glycoprotein family protein] -3.045 -1.323
65 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -2.959 -0.291
66 AT4G31940 AT4G31940 CYP82C4, cytochrome P450, family 82, subfamily C, polypeptide 4 -2.920 -1.301
67 AT3G62760 AT3G62760 ATGSTF13 -2.912 -0.427
68 AT1G70260 AT1G70260 UMAMIT36, Usually multiple acids move in and out Transporters 36 -2.849 no data
69 AT2G46850 AT2G46850 [Protein kinase superfamily protein] -2.727 -1.106
70 AT3G61880 AT3G61880 CYP78A9, cytochrome p450 78a9 -2.726 -0.926
71 AT4G25220 AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -2.683 0.259
72 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -2.636 no data
73 AT1G05835 AT1G05835 [PHD finger protein] -2.454 no data
74 AT1G76620 AT1G76620 unknown -2.436 -0.576
75 AT5G48130 AT5G48130 [Phototropic-responsive NPH3 family protein] -2.424 -0.498
76 AT3G12900 AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -2.399 -0.288
77 AT1G53130 AT1G53130 GRI, GRIM REAPER -2.316 no data
78 AT5G66800 AT5G66800 unknown -2.293 -0.386
79 AT2G46990 AT2G46990 IAA20, indole-3-acetic acid inducible 20 -2.157 0.059
80 AT4G15360 AT4G15360 CYP705A3, cytochrome P450, family 705, subfamily A, polypeptide 3 -2.114 -1.031
81 AT2G41990 AT2G41990 unknown -2.110 -0.996
82 AT3G58000 AT3G58000 [VQ motif-containing protein] -2.072 -0.795
83 AT4G33800 AT4G33800 unknown -1.992 -0.087
84 AT1G02575 AT1G02575 unknown -1.968 0.068
85 AT5G07190 AT5G07190 ATS3, seed gene 3 -1.952 -0.580
86 AT5G38200 AT5G38200 [Class I glutamine amidotransferase-like superfamily protein] -1.936 no data
87 AT3G52440 AT3G52440 [Dof-type zinc finger DNA-binding family protein] -1.935 no data
88 AT4G27170 AT4G27170 AT2S4, SESA4, seed storage albumin 4 -1.899 -1.163
89 AT5G66590 AT5G66590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -1.892 0.753
90 AT2G25130 AT2G25130 [ARM repeat superfamily protein] -1.858 no data
91 AT1G78370 AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 -1.840 0.513
92 AT3G25655 AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 -1.839 -0.163
93 AT4G28850 AT4G28850 ATXTH26, XTH26, xyloglucan endotransglucosylase/hydrolase 26 -1.817 -0.888
94 AT3G58060 AT3G58060 [Cation efflux family protein] -1.814 0.641
95 AT5G65300 AT5G65300 unknown -1.802 -0.026
96 AT3G50750 AT3G50750 BEH1, BES1/BZR1 homolog 1 -1.793 0.291
97 AT4G19690 AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 -1.788 -0.353
98 AT1G64930 AT1G64930 CYP89A7, cytochrome P450, family 87, subfamily A, polypeptide 7 -1.786 -1.128
99 AT3G27415 AT3G27415 unknown -1.786 no data
100 AT3G59440 AT3G59440 [Calcium-binding EF-hand family protein] -1.770 -0.458
101 AT2G45080 AT2G45080 cycp3;1, cyclin p3;1 -1.757 0.790
102 AT3G16300 AT3G16300 [Uncharacterised protein family (UPF0497)] -1.745 no data
103 AT5G09500 AT5G09500 [Ribosomal protein S19 family protein] -1.741 0.049
104 AT4G01680 AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -1.733 0.131
105 AT5G07550 AT5G07550 ATGRP19, GRP19, glycine-rich protein 19 -1.709 -0.466
106 AT4G33880 AT4G33880 RSL2, ROOT HAIR DEFECTIVE 6-LIKE 2 -1.709 no data
107 AT3G12820 AT3G12820 AtMYB10, myb domain protein 10, MYB10, myb domain protein 10 -1.684 0.244
108 AT1G26770 AT1G26770 AT-EXP10, ARABIDOPSIS THALIANA EXPANSIN 10, ATEXP10, ARABIDOPSIS THALIANA EXPANSIN 10, ATEXPA10, expansin A10, ATHEXP ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, EXP10, EXPANSIN 10, EXPA10, expansin A10 -1.645 0.618
109 AT3G30180 AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -1.641 -0.116