4.0:Information of module
stele pSHR 3h BL
In comparison with lateral root cap-columella pBRN2 3h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 7.500e-23
GO:0042221 response to chemical BP 2.339e-17
GO:0009605 response to external stimulus BP 2.422e-15
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 1.246e-23
GO:0043414 macromolecule methylation BP 1.013e-19
GO:0032259 methylation BP 2.060e-19
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
stele pSHR 3h BL		 Log2 signal ratio
lateral root cap-columella pBRN2 3h BL
1 AT3G05730 AT3G05730 [LOCATED IN: endomembrane system] 3.970 0.035
2 AT4G08620 AT4G08620 SULTR1;1, sulphate transporter 1;1 3.663 1.188
3 AT1G22900 AT1G22900 [Disease resistance-responsive (dirigent-like protein) family protein] 3.193 2.371
4 AT2G21040 AT2G21040 [Calcium-dependent lipid-binding (CaLB domain) family protein] 3.187 1.411
5 AT2G20880 AT2G20880 AtERF53, ERF53, ERF domain 53 3.168 1.567
6 AT1G66930 AT1G66930 [Protein kinase superfamily protein] 2.989 0.798
7 AT4G13090 AT4G13090 XTH2, xyloglucan endotransglucosylase/hydrolase 2 2.988 1.825
8 AT2G37900 AT2G37900 [Major facilitator superfamily protein] 2.935 1.258
9 AT4G35770 AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 2.849 2.005
10 AT3G27690 AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 2.822 0.338
11 AT5G25250 AT5G25250 FLOT1, flotillin 1 2.653 0.342
12 AT5G64110 AT5G64110 [Peroxidase superfamily protein] 2.567 1.511
13 AT3G18890 AT3G18890 AtTic62, translocon at the inner envelope membrane of chloroplasts 62, Tic62, translocon at the inner envelope membrane of chloroplasts 62 2.551 -0.507
14 AT5G48430 AT5G48430 [Eukaryotic aspartyl protease family protein] 2.512 1.430
15 AT2G17680 AT2G17680 unknown 2.484 3.222
16 AT1G08090 AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 2.416 2.874
17 AT4G04990 AT4G04990 unknown 2.388 1.084
18 AT1G10070 AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 2.377 1.663
19 AT1G10550 AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 2.318 1.882
20 AT1G22890 AT1G22890 unknown 2.136 2.696
21 AT1G72620 AT1G72620 [alpha/beta-Hydrolases superfamily protein] 2.135 1.963
22 AT3G48740 AT3G48740 AtSWEET11, SWEET11 2.092 3.254
23 AT5G23660 AT5G23660 AtSWEET12, MTN3, homolog of Medicago truncatula MTN3, SWEET12 2.086 3.100
24 AT2G14247 AT2G14247 [Expressed protein] 2.064 2.414
25 AT1G79320 AT1G79320 AtMC6, metacaspase 6, AtMCP2c, metacaspase 2c, MC6, metacaspase 6, MCP2c, metacaspase 2c 2.052 2.043
26 AT2G05540 AT2G05540 [Glycine-rich protein family] 2.029 0.463
27 AT3G63350 AT3G63350 AT-HSFA7B, HSFA7B, HEAT SHOCK TRANSCRIPTION FACTOR A7B 1.982 1.226
28 AT4G21870 AT4G21870 [HSP20-like chaperones superfamily protein] 1.968 2.774
29 AT1G64590 AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] 1.958 0.299
30 AT3G16530 AT3G16530 [Legume lectin family protein] 1.942 1.770
31 AT2G26820 AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 1.857 0.616
32 AT5G45480 AT5G45480 unknown 1.841 0.277
33 AT1G19530 AT1G19530 unknown 1.829 3.219
34 AT3G18200 AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 1.809 1.697
35 AT1G13110 AT1G13110 CYP71B7, cytochrome P450, family 71 subfamily B, polypeptide 7 1.796 0.639
36 AT3G01290 AT3G01290 AtHIR2, HIR2, hypersensitive induced reaction 2 1.795 0.360
37 AT1G28160 AT1G28160 [Integrase-type DNA-binding superfamily protein] 1.766 2.890
38 AT5G44417 AT5G44417 [pseudogene] 1.751 1.219
39 AT1G21400 AT1G21400 [Thiamin diphosphate-binding fold (THDP-binding) superfamily protein] 1.748 0.874
40 AT5G07330 AT5G07330 unknown 1.737 3.003
41 AT4G08300 AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 1.678 1.360
42 AT5G49360 AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 1.676 1.230
43 AT2G42060 AT2G42060 [Cysteine/Histidine-rich C1 domain family protein] 1.675 1.550
44 AT4G37390 AT4G37390 AUR3, AUXIN UPREGULATED 3, BRU6, GH3-2, GH3.2, YDK1, YADOKARI 1 1.671 1.323
45 AT5G24060 AT5G24060 [Pentatricopeptide repeat (PPR) superfamily protein] 1.645 -1.002
46 AT2G18050 AT2G18050 HIS1-3, histone H1-3 1.629 1.730
47 AT4G37220 AT4G37220 [Cold acclimation protein WCOR413 family] 1.621 0.880
48 AT4G14630 AT4G14630 GLP9, germin-like protein 9 1.619 0.592
49 AT1G28330 AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 1.619 1.677
50 AT2G22980 AT2G22980 SCPL13, serine carboxypeptidase-like 13 1.597 0.581
51 AT2G46850 AT2G46850 [Protein kinase superfamily protein] -3.703 -2.737
52 AT3G26120 AT3G26120 terminal EAR1-like 1 -3.345 -0.496
53 AT1G70680 AT1G70680 [Caleosin-related family protein] -2.846 -2.167
54 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -2.816 -3.166
55 AT3G50750 AT3G50750 BEH1, BES1/BZR1 homolog 1 -2.787 -2.498
56 AT1G51220 AT1G51220 AtWIP5, WIP5, WIP domain protein 5 -2.748 -0.882
57 AT3G12900 AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -2.748 -0.401
58 AT2G04020 AT2G04020 [GDSL-like Lipase/Acylhydrolase superfamily protein] -2.503 0.035
59 AT5G22580 AT5G22580 [Stress responsive A/B Barrel Domain] -2.423 -1.846
60 AT3G19500 AT3G19500 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -2.394 -3.708
61 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -2.310 -2.202
62 AT5G57785 AT5G57785 unknown -2.235 -4.067
63 AT4G33800 AT4G33800 unknown -2.178 -1.974
64 AT2G46990 AT2G46990 IAA20, indole-3-acetic acid inducible 20 -2.117 -0.611
65 AT3G62760 AT3G62760 ATGSTF13 -2.091 -2.761
66 AT4G28250 AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 -2.090 -1.982
67 AT3G19710 AT3G19710 BCAT4, branched-chain aminotransferase4 -2.074 -2.388
68 AT5G48070 AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 -2.002 -1.246
69 AT5G38020 AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -1.963 -2.084
70 AT1G65860 AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 -1.957 -0.948
71 AT5G26220 AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -1.947 0.167
72 AT1G74500 AT1G74500 ATBS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, bHLH135, basic helix-loop-helix protein 135, BS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, PRE3, PACLOBUTRAZOL RESISTANCE 3, TMO7, TARGET OF MONOPTEROS 7 -1.943 -1.142
73 AT3G09120 AT3G09120 unknown -1.821 -0.881
74 AT3G30725 AT3G30725 AtGDU6, glutamine dumper 6, GDU6, glutamine dumper 6 -1.779 0.295
75 AT4G25010 AT4G25010 AtSWEET14, SWEET14 -1.746 -1.747
76 AT1G05835 AT1G05835 [PHD finger protein] -1.717 -1.378
77 AT3G59340 AT3G59340 unknown -1.703 -1.656
78 AT1G68825 AT1G68825 DVL5, DEVIL 5, RTFL15, ROTUNDIFOLIA like 15 -1.668 -0.603
79 AT5G14200 AT5G14200 ATIMD1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, IMD1, isopropylmalate dehydrogenase 1 -1.643 -1.895
80 AT5G10510 AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -1.641 -1.080
81 AT1G69530 AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 -1.547 -0.587
82 AT3G23570 AT3G23570 [alpha/beta-Hydrolases superfamily protein] -1.545 -0.900
83 AT4G08780 AT4G08780 [Peroxidase superfamily protein] -1.536 -1.007
84 AT3G54600 AT3G54600 DJ-1f, DJ1F -1.533 -1.449
85 AT2G31790 AT2G31790 [UDP-Glycosyltransferase superfamily protein] -1.525 -2.006
86 AT1G78370 AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 -1.500 -1.797
87 AT3G16300 AT3G16300 [Uncharacterised protein family (UPF0497)] -1.481 -1.244
88 AT5G62210 AT5G62210 [Embryo-specific protein 3, (ATS3)] -1.467 -1.121
89 AT3G60870 AT3G60870 AHL18, AT-hook motif nuclear-localized protein 18 -1.443 -1.493
90 AT2G17080 AT2G17080 unknown -1.404 -0.874
91 AT5G23010 AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -1.364 -2.484
92 AT4G11190 AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] -1.350 -0.768
93 AT1G51190 AT1G51190 PLT2, PLETHORA 2 -1.343 -0.863
94 AT4G30650 AT4G30650 [Low temperature and salt responsive protein family] -1.332 -0.100
95 AT1G21140 AT1G21140 [Vacuolar iron transporter (VIT) family protein] -1.279 -1.577
96 AT4G30180 AT4G30180 [sequence-specific DNA binding transcription factors] -1.263 -1.114
97 AT3G08700 AT3G08700 UBC12, ubiquitin-conjugating enzyme 12 -1.248 0.932
98 AT1G21440 AT1G21440 [Phosphoenolpyruvate carboxylase family protein] -1.179 -0.809
99 AT5G17800 AT5G17800 AtMYB56, myb domain protein 56, MYB56, myb domain protein 56 -1.178 -1.402