4.0:Analysis result:Information of module
stele pSHR 3h BL

    Top 100 most enriched GO terms
GOID/TermOntologyp-valueGenes
GO:0001510
RNA methylation		BP1.246e-23AT1G18850 AT1G25260 RPL10B RACK1B AT1G52930 G-H2AX TIM13 IMP4 AT2G20450 EDA27 HDA13 AT2G32060 AT2G32220 HTA8 RPL16A AT2G45710 AT3G06530 AT3G07750 AT3G10610 AT3G15460 AT3G16080 RACK1C ATPHB4 AT3G28900 ATHD2A emb2474 AT3G47370 ROC2 AT3G58700 AT4G10450 AT4G12600 AT4G15640 AT4G15770 AT4G30800 AT5G02050 HD2C AT5G08180 AT5G15520 AT5G20160 ATPHB3 TIM8 AT5G59850
GO:0043414
macromolecule methylation		BP1.013e-19ATPCNA1 AT1G18850 AT1G25260 RPL10B RACK1B AT1G52930 G-H2AX TIM13 IMP4 ATPRMT1A AT2G20450 EDA27 HDA13 ATPCNA2 AT2G32060 AT2G32220 HTA8 AT2G39795 RPL16A AT2G45710 AT3G06530 AT3G07750 AT3G10610 AT3G15460 AT3G16080 RACK1C ATPHB4 AT3G28900 ATHD2A emb2474 AT3G47370 ROC2 AT3G58700 AT4G10450 AT4G12600 AT4G15640 AT4G15770 RRP41L ATPRMT11 AT4G30800 AT4G31810 AT5G02050 HD2C AT5G08180 AT5G15520 AT5G20160 ATPHB3 POLA3 TIM8 AT5G59850 GR-RBP3 AT5G67200
GO:0032259
methylation		BP2.060e-19ATPCNA1 AT1G18850 AT1G25260 RPL10B RACK1B AT1G52930 G-H2AX TIM13 IMP4 ATPRMT1A AT2G20450 EDA27 HDA13 ATPCNA2 AT2G32060 AT2G32220 HTA8 AT2G39795 RPL16A AT2G45710 AT3G06530 AT3G07750 AT3G10610 AT3G15460 AT3G16080 RACK1C ATPHB4 AT3G28900 ATHD2A emb2474 AT3G47370 ROC2 AT3G58700 AT4G10450 AT4G12600 AT4G15640 AT4G15770 RRP41L ATPRMT11 AT4G30800 AT4G31810 AT5G02050 HD2C AT5G08180 AT5G15520 AT5G20160 ATPHB3 POLA3 TIM8 AT5G59850 GR-RBP3 AT5G67200
GO:0016144
S-glycoside biosynthetic process		BP3.976e-17FMO CYP79F2 ATSOT17 AT1G21440 FMO ATSOT18 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase AT2G31790 UMAMIT12 ATLEUD1 ATCB5-C ATGSTF11 BCAT4 IPMI1 APR BASS5 ATLEUC1 CYP83A1 ATIPS1 SIR AtPPa6 ATIMD1 IMS3 IMS2
GO:0019758
glycosinolate biosynthetic process		BP3.976e-17FMO CYP79F2 ATSOT17 AT1G21440 FMO ATSOT18 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase AT2G31790 UMAMIT12 ATLEUD1 ATCB5-C ATGSTF11 BCAT4 IPMI1 APR BASS5 ATLEUC1 CYP83A1 ATIPS1 SIR AtPPa6 ATIMD1 IMS3 IMS2
GO:0019761
glucosinolate biosynthetic process		BP3.976e-17FMO CYP79F2 ATSOT17 AT1G21440 FMO ATSOT18 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase AT2G31790 UMAMIT12 ATLEUD1 ATCB5-C ATGSTF11 BCAT4 IPMI1 APR BASS5 ATLEUC1 CYP83A1 ATIPS1 SIR AtPPa6 ATIMD1 IMS3 IMS2
GO:0009987
cellular process		BP4.824e-17ATERF10 AT1G04770 UGT1 ADS1 AT1G06830 AT1G07070 ATPCNA1 AT1G08220 FMO encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis AT1G15250 AT1G16220 CYP79F2 ATSOT17 AT1G18850 ATEXP11 AT1G21140 AT1G21440 AT1G23100 AT1G25260 AT1G26470 AT-EXP10 RPL10B ATERF12 NRPA2 AT1G31660 AT1G32190 RACK1B AT1G50400 PLT2 AtWIP5 AT1G51380 AT1G52930 GRI Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 EMB3108 AAC42 TIM13 ASP4 AtLPLAT2 AT1G63720 IMP4 FMO CYP735A2 AT1G68200 ATNUDT1 ATELF5A-3 AT-EXP1 ATH8 PG2 AT1G71870 CLE1 ATSOT18 ATBS1 NRP1 BLH11 AHL29 ATPDI6 GNR1 ATGSTU20 AT1G78990 CYCA2;4 ATPIN4 ATEXP15 AT2G04020 RGF3 ABCC13 AT2G09990 AHB1 PIP2;8 AT2G18410 ATPRMT1A AT2G19750 AT2G20450 EDA27 AT2G20940 CYP79B3 MEL4 AT2G24700 encodes a protein whose sequence is similar to ACC oxidase PYL2 HDA13 ATEXP6 ATSMO2 ATRPAC14 ATPCNA2 ATGSTF7 CLE4 CLE7 AT2G31790 AT2G32060 AT2G32220 WDR55 CYP710A2 AT2G36580 AtXTH32 AT2G37400 UMAMIT12 AT2G37470 AT2G37600 AT2G37690 HTA8 ATEXP4 AT2G39795 AT2G40590 AT2G41480 AT2G41890 AT2G42710 RPL16A ATLEUD1 AT2G44040 AT2G44230 cycp3;1 ATSPX3 MAP1A AT2G45710 ATWRKY43 ATCB5-C AT2G46850 IAA20 AK3 ATGSTF11 GDH3 GLP8 AT3G06530 AtRABA5b ATYLMG1-1 AT3G07750 HCC1 AT3G09680 AT3G10610 AT3G12370 AT3G12900 AT3G13230 BRL3 AT3G14390 AT3G15460 AT3G15680 AT3G16080 JAL30 RACK1C ATUNG ATPUB29 AT3G19500 BCAT4 AT3G20240 PLT1 AT3G23325 ATIPT7 ATSAHH2 AtGRP4 IDL1 CYP71B15 ATPHB4 AT3G28900 GLV3 AT3G43980 ATHD2A AtXTH31 AT3G45930 AT3G46320 emb2474 DUT1 ATPHS2 AT3G47370 AT3G49320 ATBCAT-3 CYCD3;3 AT3G50230 AtDWF4 BEH1 GATA18 LPPepsilon1 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 PIP2;5 ATPDI1 ATPURM UBC14 ROC2 AT3G57010 AT3G58700 ATMTP3 IPMI1 IAA30 ATGSTF13 UMAMIT29 APR PSBQ AT4G10450 AT4G11190 BASS5 AT4G12600 AtENODL19 ATLEUC1 CYP83A1 AT4G15640 AT4G15770 ATHB-2 AT4G17720 AT4G18440 ATIRT1 APR3 ACS7 AR192 RRP41L ATEXPB3 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase ARAC7 ADS1 ATPRMT11 AT4G29690 AT4G30180 AT4G30800 AT4G31020 AT4G31810 CYP82C4 AT4G33905 CSDP1 AT4G36680 CYCD5;1 ATBRI1 ATIPS1 TAAC AT5G02050 HD2C TFL-1 SIR ATNAS1 LAC12 CBB3 AT5G08180 AT5G09500 AtPPa6 ATMIPS3 AT5G10390 AIL6 AT5G11240 AT5G11750 AT5G12110 TRA2 LEP ATIMD1 AT5G15520 AT5G15750 AtbZIP3 AtMYB56 AT5G20160 AT5G22100 IMS3 IMS2 AT5G23690 LSU2 AtENODL13 HTA7 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G38030 AT5G38890 AT5G39850 ATPHB3 POLA3 ATERF-9 mtACP3 CYP708 ATXTH20 KAT5 TIM8 AT5G53070 PTAC15 AT5G57170 AT5G57890 AT5G59240 AT5G59850 AT5G59970 AT5G60670 GR-RBP3 PDCB1 AT5G62210 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ALX8 AT5G65920 AT5G66080 RALFL34 AT5G67200 RLK
GO:0009451
RNA modification		BP1.946e-16AT1G18850 AT1G25260 RPL10B RACK1B AT1G52930 G-H2AX TIM13 IMP4 AT2G20450 EDA27 HDA13 AT2G32060 AT2G32220 HTA8 RPL16A AT2G45710 AT3G06530 AT3G07750 AT3G10610 AT3G15460 AT3G16080 RACK1C ATPHB4 AT3G28900 ATHD2A emb2474 AT3G47370 ROC2 AT3G58700 AT4G10450 AT4G12600 AT4G15640 AT4G15770 AT4G30800 AT5G02050 HD2C AT5G08180 AT5G15520 AT5G20160 ATPHB3 TIM8 AT5G59850
GO:1901137
carbohydrate derivative biosynthetic pro...		BP6.719e-16FMO CYP79F2 ATSOT17 AT1G21440 AT1G31660 RACK1B AT1G52930 EMB3108 FMO ATSOT18 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase AT2G31790 WDR55 UMAMIT12 AT2G37690 AT2G39795 ATLEUD1 ATSPX3 ATCB5-C ATGSTF11 AT3G06530 ATYLMG1-1 AT3G15460 RACK1C BCAT4 ATHD2A encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM IPMI1 APR BASS5 ATLEUC1 CYP83A1 AT4G18440 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 ATIPS1 AT5G02050 SIR AtPPa6 AT5G11240 ATIMD1 IMS3 IMS2 GR-RBP3
GO:0016143
S-glycoside metabolic process		BP9.448e-16FMO CYP79F2 ATSOT17 AT1G21440 FMO ATSOT18 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase AT2G31790 UMAMIT12 ATLEUD1 ATCB5-C ATGSTF11 BCAT4 IPMI1 APR BASS5 ATLEUC1 CYP83A1 ATIPS1 SIR AtPPa6 ATIMD1 IMS3 IMS2
GO:0019757
glycosinolate metabolic process		BP9.448e-16FMO CYP79F2 ATSOT17 AT1G21440 FMO ATSOT18 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase AT2G31790 UMAMIT12 ATLEUD1 ATCB5-C ATGSTF11 BCAT4 IPMI1 APR BASS5 ATLEUC1 CYP83A1 ATIPS1 SIR AtPPa6 ATIMD1 IMS3 IMS2
GO:0019760
glucosinolate metabolic process		BP9.448e-16FMO CYP79F2 ATSOT17 AT1G21440 FMO ATSOT18 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase AT2G31790 UMAMIT12 ATLEUD1 ATCB5-C ATGSTF11 BCAT4 IPMI1 APR BASS5 ATLEUC1 CYP83A1 ATIPS1 SIR AtPPa6 ATIMD1 IMS3 IMS2
GO:0044550
secondary metabolite biosynthetic proces...		BP9.794e-14FMO CYP79F2 ATSOT17 AT1G21440 FMO ATSOT18 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase AT2G31790 UMAMIT12 ATLEUD1 ATCB5-C ATGSTF11 BCAT4 CYP71B15 IPMI1 APR AT4G11190 BASS5 ATLEUC1 CYP83A1 ATIPS1 SIR AtPPa6 TRA2 ATIMD1 IMS3 IMS2
GO:0071704
organic substance metabolic process		BP5.330e-13AT1G03220 AT1G03230 ATERF10 UGT1 ADS1 AT1G07070 ATPCNA1 FMO encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis AT1G15250 AT1G16220 CYP79F2 ATSOT17 AT1G18850 AT1G20380 AT1G21440 AT1G23100 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 AT1G32190 RACK1B AT1G50400 PLT2 AtWIP5 AT1G52930 GRI Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 EMB3108 AAC42 TIM13 ASP4 AtLPLAT2 IMP4 AtGH9C2 FMO CYP735A2 AT1G68200 ATELF5A-3 ATH8 PG2 AT1G71870 ATSOT18 NRP1 BLH11 AHL29 ATPDI6 GNR1 ATGSTU20 CYCA2;4 ATPIN4 ATEXP15 AT2G04020 RGF3 AT2G09990 ATPRMT1A AT2G19750 AT2G20450 EDA27 AT2G20940 CYP79B3 MEL4 AT2G24700 encodes a protein whose sequence is similar to ACC oxidase PYL2 HDA13 ATSMO2 ATRPAC14 ATPCNA2 ATGSTF7 AT2G31790 AT2G32060 AT2G32220 WDR55 CYP710A2 AT2G36580 AtXTH32 UMAMIT12 AT2G37600 AT2G37690 HTA8 AT2G39795 AT2G40590 AT2G41480 AT2G41890 AT2G42710 RPL16A ATLEUD1 AT2G44040 AT2G44230 cycp3;1 ATSPX3 MAP1A AT2G45710 ATWRKY43 AT2G46170 ATCB5-C AT2G46850 IAA20 AK3 ATGSTF11 GDH3 AT3G06530 ATYLMG1-1 AT3G07750 HCC1 AT3G09680 AT3G10610 AT3G12370 AT3G13230 BRL3 CYP90D1 AT3G14390 AT3G15460 AT3G16080 JAL30 RACK1C ATUNG ATPUB29 AT3G19500 BCAT4 BE1 PLT1 AT3G23325 ATIPT7 ATSAHH2 AtGRP4 CYP71B15 ATPHB4 AT3G28900 BR6OX2 AT3G43980 ATHD2A AtXTH31 emb2474 DUT1 ATPHS2 AT3G47370 ATBCAT-3 CYCD3;3 AT3G50230 AtDWF4 BEH1 GATA18 LPPepsilon1 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPDI1 ATPURM UBC14 ROC2 AT3G57010 AT3G58700 IPMI1 AT3G61820 IAA30 PLA APR PSBQ AT4G10450 AtGH9C3 AT4G11190 BASS5 AT4G12600 ATLEUC1 CYP83A1 AT4G15640 AT4G15770 AT4G16770 ATHB-2 AT4G18440 ACS7 AR192 RRP41L This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase ATPRMT11 AT4G29690 AT4G30180 AT4G30800 AT4G31020 AT4G31810 AT4G33905 CSDP1 CYCD5;1 ATBRI1 ATIPS1 TAAC AT5G02050 HD2C SIR ATNAS1 LAC12 CBB3 AT5G07030 CYP75B1 AT5G08180 AT5G09500 AtPPa6 ATMIPS3 AIL6 AT5G11240 AT5G11750 AT5G12110 TRA2 LEP ATIMD1 AT5G15520 AtbZIP3 AtMYB56 AT5G20160 AT5G22100 IMS3 IMS2 AT5G23690 LSU2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G39850 ATPHB3 POLA3 ATERF-9 mtACP3 CYP708 ATXTH20 KAT5 TIM8 AT5G53070 PTAC15 AT5G57785 AT5G57890 AT5G59240 AT5G59850 AT5G60670 GR-RBP3 PDCB1 AT5G62210 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. HIPL2 ALX8 AT5G65920 AT5G66080 AT5G66530 AT5G67200 RLK
GO:0019748
secondary metabolic process		BP8.277e-13UGT1 FMO CYP79F2 ATSOT17 AT1G21440 FMO ATSOT18 ATGSTU20 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase ATGSTF7 AT2G31790 UMAMIT12 AT2G41480 ATLEUD1 ATCB5-C ATGSTF11 BCAT4 CYP71B15 ATBCAT-3 IPMI1 ATGSTF13 APR AT4G11190 BASS5 ATLEUC1 CYP83A1 ATIPS1 SIR LAC12 AtPPa6 AT5G12110 TRA2 ATIMD1 IMS3 IMS2
GO:0044237
cellular metabolic process		BP1.610e-12ATERF10 UGT1 ADS1 AT1G07070 ATPCNA1 FMO encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis AT1G15250 AT1G16220 CYP79F2 ATSOT17 AT1G18850 AT1G21440 AT1G23100 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 AT1G32190 RACK1B AT1G50400 PLT2 AtWIP5 AT1G52930 GRI Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 EMB3108 AAC42 TIM13 ASP4 AtLPLAT2 IMP4 FMO CYP735A2 AT1G68200 ATELF5A-3 ATH8 PG2 AT1G71870 ATSOT18 NRP1 BLH11 AHL29 ATPDI6 GNR1 ATGSTU20 CYCA2;4 ATEXP15 AT2G04020 AT2G09990 AHB1 ATPRMT1A AT2G19750 AT2G20450 EDA27 AT2G20940 CYP79B3 MEL4 AT2G24700 encodes a protein whose sequence is similar to ACC oxidase PYL2 HDA13 ATSMO2 ATRPAC14 ATPCNA2 ATGSTF7 AT2G31790 AT2G32060 AT2G32220 WDR55 CYP710A2 AT2G36580 AtXTH32 UMAMIT12 AT2G37600 AT2G37690 HTA8 AT2G39795 AT2G40590 AT2G41480 AT2G41890 AT2G42710 RPL16A ATLEUD1 AT2G44040 AT2G44230 cycp3;1 ATSPX3 MAP1A AT2G45710 ATWRKY43 ATCB5-C AT2G46850 IAA20 AK3 ATGSTF11 GDH3 AT3G06530 ATYLMG1-1 AT3G07750 HCC1 AT3G09680 AT3G10610 AT3G12370 AT3G13230 BRL3 AT3G14390 AT3G15460 AT3G16080 JAL30 RACK1C ATUNG ATPUB29 AT3G19500 BCAT4 PLT1 AT3G23325 ATIPT7 ATSAHH2 AtGRP4 CYP71B15 ATPHB4 AT3G28900 AT3G43980 ATHD2A AtXTH31 emb2474 DUT1 ATPHS2 AT3G47370 ATBCAT-3 CYCD3;3 AT3G50230 BEH1 GATA18 LPPepsilon1 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPDI1 ATPURM UBC14 ROC2 AT3G57010 AT3G58700 IPMI1 IAA30 ATGSTF13 APR PSBQ AT4G10450 AT4G11190 BASS5 AT4G12600 ATLEUC1 CYP83A1 AT4G15640 AT4G15770 ATHB-2 AT4G18440 APR3 ACS7 AR192 RRP41L This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase ATPRMT11 AT4G29690 AT4G30180 AT4G30800 AT4G31020 AT4G31810 AT4G33905 CSDP1 CYCD5;1 ATBRI1 ATIPS1 TAAC AT5G02050 HD2C SIR ATNAS1 LAC12 AT5G08180 AT5G09500 AtPPa6 ATMIPS3 AIL6 AT5G11240 AT5G11750 AT5G12110 TRA2 LEP ATIMD1 AT5G15520 AtbZIP3 AtMYB56 AT5G20160 AT5G22100 IMS3 IMS2 AT5G23690 LSU2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G39850 ATPHB3 POLA3 ATERF-9 mtACP3 CYP708 ATXTH20 KAT5 TIM8 AT5G53070 PTAC15 AT5G57890 AT5G59240 AT5G59850 AT5G60670 GR-RBP3 PDCB1 AT5G62210 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ALX8 AT5G65920 AT5G66080 AT5G67200 RLK
GO:0044281
small molecule metabolic process		BP1.943e-12UGT1 ADS1 ATPCNA1 FMO encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis CYP79F2 ATSOT17 AT1G21440 AT1G31660 RACK1B AT1G52930 GRI EMB3108 ASP4 FMO ATH8 AT1G71870 ATSOT18 NRP1 ATPDI6 GNR1 ATGSTU20 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase PYL2 HDA13 ATSMO2 ATGSTF7 AT2G31790 WDR55 CYP710A2 AT2G36580 UMAMIT12 AT2G37690 AT2G39795 ATLEUD1 AT2G44040 ATCB5-C AK3 ATGSTF11 GDH3 AT3G06530 ATYLMG1-1 HCC1 AT3G10610 CYP90D1 AT3G14390 AT3G15460 RACK1C BCAT4 ATSAHH2 CYP71B15 BR6OX2 ATHD2A DUT1 ATBCAT-3 AtDWF4 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPDI1 ATPURM AT3G57010 IPMI1 APR BASS5 AT4G12600 ATLEUC1 CYP83A1 AT4G18440 ACS7 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29690 AT4G31810 AT4G33905 CSDP1 ATIPS1 AT5G02050 SIR ATNAS1 CBB3 AT5G08180 AtPPa6 ATMIPS3 AT5G11240 TRA2 ATIMD1 IMS3 IMS2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) mtACP3 KAT5 AT5G57890 AT5G59240 GR-RBP3 PDCB1 AT5G62210 ALX8
GO:1901659
glycosyl compound biosynthetic process		BP3.246e-12FMO CYP79F2 ATSOT17 AT1G21440 FMO ATSOT18 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase AT2G31790 UMAMIT12 ATLEUD1 ATCB5-C ATGSTF11 BCAT4 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis IPMI1 APR BASS5 ATLEUC1 CYP83A1 ATIPS1 SIR AtPPa6 ATIMD1 IMS3 IMS2
GO:0006807
nitrogen compound metabolic process		BP6.061e-12ATERF10 UGT1 ATPCNA1 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 AT1G18850 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 RACK1B AT1G50400 PLT2 AtWIP5 AT1G52930 Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 EMB3108 AAC42 TIM13 ASP4 IMP4 FMO CYP735A2 AT1G68200 ATSOT18 BLH11 GNR1 ATGSTU20 CYCA2;4 AT2G20450 EDA27 CYP79B3 AT2G24700 HDA13 ATSMO2 ATRPAC14 ATPCNA2 ATGSTF7 AT2G32060 AT2G32220 WDR55 AT2G37690 HTA8 AT2G39795 AT2G42710 RPL16A ATLEUD1 AT2G44040 ATSPX3 AT2G45710 ATWRKY43 ATCB5-C IAA20 AK3 ATGSTF11 GDH3 AT3G06530 ATYLMG1-1 AT3G07750 AT3G10610 AT3G12370 AT3G13230 AT3G14390 AT3G15460 AT3G16080 RACK1C ATUNG AT3G19500 BCAT4 PLT1 AT3G23325 ATIPT7 ATSAHH2 AtGRP4 CYP71B15 ATPHB4 AT3G28900 ATHD2A emb2474 DUT1 AT3G47370 ATBCAT-3 CYCD3;3 BEH1 GATA18 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPURM ROC2 AT3G57010 AT3G58700 IPMI1 IAA30 APR AT4G10450 AT4G12600 ATLEUC1 CYP83A1 AT4G15640 AT4G15770 ATHB-2 AT4G18440 ACS7 AR192 RRP41L This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29690 AT4G30180 AT4G30800 AT4G31810 CSDP1 CYCD5;1 ATIPS1 AT5G02050 HD2C SIR ATNAS1 AT5G08180 AtPPa6 AIL6 AT5G11240 LEP ATIMD1 AT5G15520 AtbZIP3 AtMYB56 AT5G20160 AT5G22100 IMS3 IMS2 AT5G23690 LSU2 ATPHB3 POLA3 ATERF-9 mtACP3 TIM8 PTAC15 AT5G57890 AT5G59240 AT5G59850 GR-RBP3 PDCB1 AT5G62290 ALX8 AT5G67200
GO:0009058
biosynthetic process		BP1.290e-11ATERF10 ADS1 AT1G07070 ATPCNA1 FMO encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis AT1G15250 AT1G16220 CYP79F2 ATSOT17 AT1G21440 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 AT1G32190 RACK1B PLT2 AtWIP5 AT1G52930 GRI Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. ARR3 EMB3108 AAC42 ASP4 AtLPLAT2 FMO CYP735A2 AT1G68200 ATELF5A-3 ATH8 PG2 ATSOT18 NRP1 BLH11 GNR1 ATGSTU20 CYCA2;4 ATPIN4 AT2G04020 AT2G09990 AT2G19750 AT2G20450 CYP79B3 AT2G24700 encodes a protein whose sequence is similar to ACC oxidase HDA13 ATSMO2 ATRPAC14 ATPCNA2 ATGSTF7 AT2G31790 AT2G32060 AT2G32220 WDR55 CYP710A2 UMAMIT12 AT2G37600 AT2G37690 AT2G39795 AT2G40590 AT2G42710 RPL16A ATLEUD1 AT2G44040 AT2G44230 ATSPX3 AT2G45710 ATWRKY43 ATCB5-C IAA20 AK3 ATGSTF11 AT3G06530 ATYLMG1-1 AT3G09680 AT3G10610 AT3G12370 CYP90D1 AT3G14390 AT3G15460 AT3G16080 RACK1C ATUNG AT3G19500 BCAT4 PLT1 ATIPT7 ATSAHH2 CYP71B15 AT3G28900 BR6OX2 AT3G43980 ATHD2A emb2474 DUT1 ATPHS2 AT3G47370 CYCD3;3 AtDWF4 BEH1 GATA18 LPPepsilon1 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPURM AT3G57010 AT3G58700 IPMI1 IAA30 APR PSBQ AT4G10450 AT4G11190 BASS5 AT4G12600 ATLEUC1 CYP83A1 AT4G16770 ATHB-2 AT4G18440 ACS7 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G30180 AT4G30800 AT4G31020 AT4G31810 CSDP1 CYCD5;1 ATBRI1 ATIPS1 AT5G02050 HD2C SIR ATNAS1 CBB3 CYP75B1 AT5G08180 AT5G09500 AtPPa6 ATMIPS3 AIL6 AT5G11240 AT5G11750 AT5G12110 TRA2 LEP ATIMD1 AT5G15520 AtbZIP3 AtMYB56 IMS3 IMS2 LSU2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G39850 POLA3 ATERF-9 mtACP3 KAT5 TIM8 AT5G53070 PTAC15 AT5G57785 AT5G57890 AT5G59240 AT5G59850 AT5G60670 GR-RBP3 PDCB1 AT5G62210 ALX8 AT5G67200"
GO:0042446
hormone biosynthetic process		BP1.379e-11ATSOT17 CYP735A2 ATSOT18 ATGSTU20 CYP79B3 ATSMO2 ATGSTF7 ATLEUD1 ATCB5-C CYP90D1 BCAT4 ATIPT7 CYP71B15 BR6OX2 AtDWF4 TRP3 AT3G57010 APR CYP83A1 SIR CBB3 AtPPa6 IMS3 IMS2
GO:1901566
organonitrogen compound biosynthetic pro...		BP1.530e-11encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 AT1G31660 RACK1B AT1G52930 EMB3108 CYP735A2 ATSOT18 ATGSTU20 CYP79B3 ATSMO2 ATGSTF7 WDR55 AT2G37690 AT2G39795 ATLEUD1 AT2G44040 ATCB5-C AK3 AT3G06530 ATYLMG1-1 AT3G10610 AT3G14390 AT3G15460 RACK1C BCAT4 ATSAHH2 CYP71B15 ATHD2A encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPURM AT3G57010 IPMI1 APR AT4G12600 ATLEUC1 CYP83A1 AT4G18440 ACS7 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 ATIPS1 AT5G02050 SIR ATNAS1 AtPPa6 AT5G11240 ATIMD1 IMS3 IMS2 AT5G57890 GR-RBP3 PDCB1
GO:1901576
organic substance biosynthetic process		BP1.826e-11ATERF10 ADS1 AT1G07070 ATPCNA1 FMO encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis AT1G15250 AT1G16220 CYP79F2 ATSOT17 AT1G21440 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 AT1G32190 RACK1B PLT2 AtWIP5 AT1G52930 GRI Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. ARR3 EMB3108 AAC42 ASP4 AtLPLAT2 FMO CYP735A2 AT1G68200 ATELF5A-3 ATH8 PG2 ATSOT18 NRP1 BLH11 ATGSTU20 CYCA2;4 ATPIN4 AT2G04020 AT2G09990 AT2G19750 AT2G20450 CYP79B3 AT2G24700 encodes a protein whose sequence is similar to ACC oxidase HDA13 ATSMO2 ATRPAC14 ATPCNA2 ATGSTF7 AT2G31790 AT2G32060 AT2G32220 WDR55 CYP710A2 UMAMIT12 AT2G37600 AT2G37690 AT2G39795 AT2G40590 AT2G42710 RPL16A ATLEUD1 AT2G44040 AT2G44230 ATSPX3 AT2G45710 ATWRKY43 ATCB5-C IAA20 AK3 ATGSTF11 AT3G06530 ATYLMG1-1 AT3G09680 AT3G10610 AT3G12370 CYP90D1 AT3G14390 AT3G15460 AT3G16080 RACK1C ATUNG AT3G19500 BCAT4 PLT1 ATSAHH2 CYP71B15 AT3G28900 BR6OX2 AT3G43980 ATHD2A DUT1 ATPHS2 AT3G47370 CYCD3;3 AtDWF4 BEH1 GATA18 LPPepsilon1 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPURM AT3G57010 AT3G58700 IPMI1 IAA30 APR AT4G10450 AT4G11190 BASS5 AT4G12600 ATLEUC1 CYP83A1 AT4G16770 ATHB-2 AT4G18440 ACS7 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G30180 AT4G30800 AT4G31020 AT4G31810 CSDP1 CYCD5;1 ATBRI1 ATIPS1 AT5G02050 HD2C SIR ATNAS1 CBB3 CYP75B1 AT5G08180 AT5G09500 AtPPa6 ATMIPS3 AIL6 AT5G11240 AT5G11750 AT5G12110 TRA2 LEP ATIMD1 AT5G15520 AtbZIP3 AtMYB56 IMS3 IMS2 LSU2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G39850 POLA3 ATERF-9 mtACP3 KAT5 AT5G53070 PTAC15 AT5G57785 AT5G57890 AT5G59240 AT5G59850 AT5G60670 GR-RBP3 PDCB1 AT5G62210 ALX8 AT5G67200
GO:0010817
regulation of hormone levels		BP4.532e-11ATSOT17 CYP735A2 PG2 ATSOT18 ATGSTU20 ATPIN4 CYP79B3 ATSMO2 ATGSTF7 ATLEUD1 ATCB5-C CYP90D1 BCAT4 ATIPT7 CYP71B15 BR6OX2 GLV3 AtDWF4 TRP3 AT3G57010 APR CYP83A1 ATBRI1 SIR CBB3 AtPPa6 IMS3 IMS2
GO:0071840
cellular component organization or bioge...		BP4.935e-11AT1G04770 UGT1 AT1G07070 ATPCNA1 AT1G08220 AT1G15250 AT1G18850 ATEXP11 AT1G25260 AT1G26470 AT-EXP10 AT1G31660 RACK1B AT1G50400 AT1G52930 Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX TIM13 IMP4 ATELF5A-3 AT-EXP1 ATH8 PG2 NRP1 CYCA2;4 ATPIN4 ATEXP15 AT2G18410 ATPRMT1A AT2G20450 EDA27 CYP79B3 ATEXP6 ATPCNA2 WDR55 AtXTH32 AT2G37400 AT2G37470 HTA8 ATEXP4 AT2G39795 AT2G40590 AT2G41480 AT2G45710 ATYLMG1-1 AT3G07750 HCC1 AT3G10610 AT3G12370 AT3G13230 AT3G15680 AT3G16080 ATIPT7 ATSAHH2 AtGRP4 CYP71B15 AT3G28900 ATHD2A AtXTH31 AT3G45930 AT3G46320 emb2474 AT3G49320 AtDWF4 TRP3 ROC2 UMAMIT29 AT4G12600 AtENODL19 AT4G15770 ATHB-2 AT4G22380 AR192 RRP41L ATEXPB3 ARAC7 ATPRMT11 AT4G30800 AT4G31810 CSDP1 AT4G36680 ATBRI1 SIR ATNAS1 CBB3 AT5G08180 AtPPa6 AT5G10390 AT5G11240 AT5G11750 AT5G15750 AT5G20160 AT5G22100 LSU2 AtENODL13 HTA7 AT5G38890 ATPHB3 POLA3 TIM8 AT5G53070 PTAC15 AT5G59240 AT5G59850 AT5G59970 AT5G60670 GR-RBP3 PDCB1 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ALX8 AT5G67200
GO:0044711
single-organism biosynthetic process		BP6.924e-11ADS1 ATPCNA1 FMO encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis CYP79F2 ATSOT17 AT1G21440 AT1G31660 RACK1B AT1G52930 GRI EMB3108 ASP4 AtLPLAT2 FMO ATELF5A-3 PG2 ATSOT18 NRP1 ATGSTU20 CYCA2;4 ATPIN4 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase HDA13 ATSMO2 ATPCNA2 ATGSTF7 AT2G31790 WDR55 CYP710A2 UMAMIT12 AT2G37690 AT2G39795 ATLEUD1 AT2G44040 ATSPX3 ATCB5-C AK3 ATGSTF11 AT3G06530 ATYLMG1-1 AT3G10610 CYP90D1 AT3G14390 AT3G15460 RACK1C BCAT4 ATSAHH2 CYP71B15 BR6OX2 ATHD2A ATPHS2 CYCD3;3 AtDWF4 LPPepsilon1 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPURM AT3G57010 IPMI1 APR AT4G11190 BASS5 AT4G12600 ATLEUC1 CYP83A1 AT4G18440 ACS7 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 CSDP1 CYCD5;1 ATBRI1 ATIPS1 AT5G02050 SIR ATNAS1 CBB3 CYP75B1 AT5G08180 AtPPa6 ATMIPS3 AT5G11240 TRA2 ATIMD1 IMS3 IMS2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) mtACP3 KAT5 PTAC15 AT5G57890 AT5G59240 GR-RBP3 PDCB1 AT5G62210 ALX8
GO:0042445
hormone metabolic process		BP9.457e-11ATSOT17 CYP735A2 ATSOT18 ATGSTU20 CYP79B3 ATSMO2 ATGSTF7 ATLEUD1 ATCB5-C CYP90D1 BCAT4 ATIPT7 CYP71B15 BR6OX2 AtDWF4 TRP3 AT3G57010 APR CYP83A1 SIR CBB3 AtPPa6 IMS3 IMS2
GO:1901360
organic cyclic compound metabolic proces...		BP1.102e-10ATERF10 UGT1 ATPCNA1 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 AT1G18850 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 RACK1B AT1G50400 PLT2 AtWIP5 AT1G52930 GRI Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 EMB3108 AAC42 TIM13 IMP4 CYP735A2 AT1G68200 ATSOT18 BLH11 ATGSTU20 CYCA2;4 AT2G20450 EDA27 CYP79B3 AT2G24700 HDA13 ATSMO2 ATRPAC14 ATPCNA2 ATGSTF7 AT2G32060 AT2G32220 WDR55 CYP710A2 AT2G37690 HTA8 AT2G39795 AT2G41480 AT2G42710 RPL16A ATLEUD1 ATSPX3 AT2G45710 ATWRKY43 ATCB5-C IAA20 ATGSTF11 AT3G06530 ATYLMG1-1 AT3G07750 AT3G10610 AT3G12370 AT3G13230 CYP90D1 AT3G15460 AT3G16080 RACK1C ATUNG AT3G19500 BCAT4 PLT1 AT3G23325 ATIPT7 AtGRP4 CYP71B15 ATPHB4 AT3G28900 BR6OX2 ATHD2A emb2474 DUT1 AT3G47370 CYCD3;3 AtDWF4 BEH1 GATA18 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPURM ROC2 AT3G57010 AT3G58700 IAA30 APR AT4G10450 AT4G11190 AT4G12600 CYP83A1 AT4G15640 AT4G15770 ATHB-2 AT4G18440 AR192 RRP41L This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29690 AT4G30180 AT4G30800 AT4G31810 CSDP1 CYCD5;1 AT5G02050 HD2C SIR ATNAS1 LAC12 CBB3 AT5G08180 AtPPa6 AIL6 AT5G11240 TRA2 LEP AT5G15520 AtbZIP3 AtMYB56 AT5G20160 AT5G22100 IMS3 IMS2 AT5G23690 LSU2 ATPHB3 POLA3 ATERF-9 mtACP3 CYP708 TIM8 PTAC15 AT5G57890 AT5G59240 AT5G59850 GR-RBP3 AT5G62290 ALX8 AT5G67200
GO:0008152
metabolic process		BP1.416e-10ATFRO2 AT1G03220 AT1G03230 ATERF10 UGT1 ADS1 AT1G07070 ATPCNA1 FMO encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis AT1G15250 AT1G16220 CYP79F2 ATSOT17 AT1G18850 AT1G20380 AT1G21440 AT1G23100 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 AT1G32190 RACK1B AT1G50400 PLT2 AtWIP5 AT1G52930 GRI Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 EMB3108 AAC42 TIM13 ASP4 AtLPLAT2 IMP4 AT1G64185 AtGH9C2 FMO CYP735A2 AT1G68200 ATELF5A-3 ATH8 PG2 AT1G71870 ATSOT18 NRP1 BLH11 AHL29 ATPDI6 GNR1 ATGSTU20 CYCA2;4 ATPIN4 ATEXP15 AT2G04020 RGF3 AT2G09990 AHB1 ATPRMT1A AT2G19750 AT2G20450 EDA27 AT2G20940 CYP79B3 MEL4 AT2G24700 encodes a protein whose sequence is similar to ACC oxidase PYL2 HDA13 ATSMO2 ATRPAC14 ATPCNA2 ATGSTF7 AT2G31790 AT2G32060 AT2G32220 WDR55 CYP710A2 AT2G36580 AtXTH32 UMAMIT12 AT2G37600 AT2G37690 HTA8 AT2G39020 AT2G39795 AT2G40590 AT2G41480 AT2G41890 AT2G42710 RPL16A ATLEUD1 AT2G44040 AT2G44230 cycp3;1 ATSPX3 MAP1A AT2G45710 ATWRKY43 AT2G46170 ATCB5-C AT2G46850 IAA20 AK3 ATGSTF11 GDH3 AT3G06530 ATYLMG1-1 AT3G07750 HCC1 AT3G09680 AT3G10610 AT3G12370 AT3G12900 AT3G13230 BRL3 CYP90D1 AT3G14390 AT3G15460 AT3G16080 JAL30 RACK1C ATUNG ATPUB29 AT3G19500 BCAT4 BE1 PLT1 AT3G23325 ATIPT7 ATSAHH2 AtGRP4 CYP71B15 ATPHB4 AT3G28900 BR6OX2 AT3G43980 ATHD2A AtXTH31 emb2474 DUT1 ATPHS2 AT3G47370 ATBCAT-3 CYCD3;3 AT3G50230 AtDWF4 BEH1 GATA18 LPPepsilon1 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPDI1 ATPURM UBC14 ROC2 AT3G57010 AT3G58700 ATMTP3 IPMI1 AT3G61820 IAA30 ATGSTF13 PLA APR ATMSRB4 PSBQ SAPX AT4G08780 AT4G10450 AtGH9C3 AT4G11190 BASS5 AT4G12600 ATLEUC1 CYP83A1 AT4G15640 AT4G15770 AT4G16770 ATHB-2 AT4G18440 APR3 ACS7 AR192 RRP41L This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase ATPRMT11 AT4G29690 AT4G30180 AT4G30800 AT4G31020 AT4G31810 CYP82C4 AT4G33905 CSDP1 CYCD5;1 ATBRI1 ATIPS1 TAAC AT5G02050 HD2C SIR ATNAS1 PRX52 LAC12 CBB3 AT5G07030 CYP75B1 AT5G08180 AT5G09500 AtPPa6 ATMIPS3 AIL6 AT5G11240 AT5G11750 AT5G12110 TRA2 LEP ATIMD1 AT5G15520 AtbZIP3 AtMYB56 AT5G20160 AT5G22100 IMS3 IMS2 NIC3 AT5G23690 LSU2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G39850 ATPHB3 POLA3 ATERF-9 mtACP3 CYP708 ATXTH20 KAT5 TIM8 AT5G53070 PTAC15 AT5G57785 AT5G57890 AT5G59240 AT5G59850 AT5G60670 GR-RBP3 PDCB1 AT5G62210 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. HIPL2 ALX8 AT5G65920 AT5G66080 AT5G66530 AT5G67200 RLK
GO:0009684
indoleacetic acid biosynthetic process		BP1.544e-10ATSOT17 ATSOT18 ATGSTU20 CYP79B3 ATGSTF7 ATLEUD1 ATCB5-C BCAT4 CYP71B15 TRP3 APR CYP83A1 SIR AtPPa6 IMS3 IMS2
GO:0044249
cellular biosynthetic process		BP1.690e-10ATERF10 ADS1 AT1G07070 ATPCNA1 FMO encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis AT1G15250 AT1G16220 CYP79F2 ATSOT17 AT1G21440 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 AT1G32190 RACK1B PLT2 AtWIP5 AT1G52930 GRI Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. ARR3 EMB3108 AAC42 ASP4 AtLPLAT2 FMO CYP735A2 AT1G68200 ATELF5A-3 ATH8 ATSOT18 BLH11 GNR1 ATGSTU20 CYCA2;4 AT2G04020 AT2G09990 AT2G19750 AT2G20450 CYP79B3 AT2G24700 encodes a protein whose sequence is similar to ACC oxidase HDA13 ATSMO2 ATRPAC14 ATPCNA2 ATGSTF7 AT2G31790 AT2G32060 AT2G32220 WDR55 CYP710A2 UMAMIT12 AT2G37600 AT2G37690 AT2G39795 AT2G40590 AT2G42710 RPL16A ATLEUD1 AT2G44040 AT2G44230 ATSPX3 AT2G45710 ATWRKY43 ATCB5-C IAA20 AK3 ATGSTF11 AT3G06530 ATYLMG1-1 AT3G09680 AT3G10610 AT3G12370 AT3G14390 AT3G15460 AT3G16080 RACK1C ATUNG AT3G19500 BCAT4 PLT1 ATIPT7 ATSAHH2 CYP71B15 AT3G28900 AT3G43980 ATHD2A emb2474 DUT1 ATPHS2 AT3G47370 CYCD3;3 BEH1 GATA18 LPPepsilon1 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPURM AT3G57010 AT3G58700 IPMI1 IAA30 APR PSBQ AT4G10450 AT4G11190 BASS5 AT4G12600 ATLEUC1 CYP83A1 ATHB-2 AT4G18440 ACS7 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G30180 AT4G30800 AT4G31020 AT4G31810 CSDP1 CYCD5;1 ATIPS1 AT5G02050 HD2C SIR ATNAS1 AT5G08180 AT5G09500 AtPPa6 ATMIPS3 AIL6 AT5G11240 AT5G11750 AT5G12110 TRA2 LEP ATIMD1 AT5G15520 AtbZIP3 AtMYB56 IMS3 IMS2 LSU2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G39850 POLA3 ATERF-9 mtACP3 TIM8 AT5G53070 PTAC15 AT5G57890 AT5G59240 AT5G59850 AT5G60670 GR-RBP3 PDCB1 AT5G62210 ALX8 AT5G67200
GO:0009683
indoleacetic acid metabolic process		BP2.061e-10ATSOT17 ATSOT18 ATGSTU20 CYP79B3 ATGSTF7 ATLEUD1 ATCB5-C BCAT4 CYP71B15 TRP3 APR CYP83A1 SIR AtPPa6 IMS3 IMS2
GO:0044272
sulfur compound biosynthetic process		BP3.814e-10FMO encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis CYP79F2 ATSOT17 AT1G21440 FMO ATSOT18 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase AT2G31790 UMAMIT12 ATLEUD1 ATCB5-C ATGSTF11 BCAT4 ATSAHH2 CYP71B15 IPMI1 APR BASS5 ATLEUC1 CYP83A1 ATIPS1 SIR AtPPa6 ATIMD1 IMS3 IMS2
GO:0042435
indole-containing compound biosynthetic ...		BP3.914e-10ATSOT17 ATSOT18 ATGSTU20 CYP79B3 ATGSTF7 ATLEUD1 ATCB5-C BCAT4 CYP71B15 TRP3 APR CYP83A1 SIR AtPPa6 IMS3 IMS2 AT5G57890
GO:0044699
single-organism process		BP4.242e-10ATFRO2 ATERF10 UGT1 ADS1 AT1G06830 ATPCNA1 FMO encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis CYP79F2 ATSOT17 AT1G18850 ATEXP11 AT1G21440 AT1G26470 AT-EXP10 ATERF12 AT1G31660 AT1G32190 RACK1B AT1G50400 PLT2 AT1G51380 AT1G52930 GRI Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 EMB3108 TIM13 ASP4 AtLPLAT2 AT1G63720 FMO CYP735A2 DVL5 ATELF5A-3 AT-EXP1 ATH8 PG2 AT1G71870 CLE1 ATSOT18 ATBS1 NRP1 SRS5 AHL29 ATPDI6 GNR1 ATGSTU20 AT1G78990 CYCA2;4 ATPIN4 ATEXP15 AT2G04020 RGF3 ABCC13 AHB1 PIP2;8 AT2G18410 AT2G18900 ATPRMT1A EDA27 LAX2 CYP79B3 AtGDU4 encodes a protein whose sequence is similar to ACC oxidase PYL2 HDA13 ATEXP6 ATSMO2 ATPCNA2 ATGSTF7 CLE4 CLE7 AT2G31790 AT2G33620 WDR55 CYP710A2 AT2G36580 AT2G37400 UMAMIT12 AT2G37690 HTA8 ATEXP4 AT2G39795 AT2G41480 AT2G41890 ATLEUD1 AT2G44040 cycp3;1 ATSPX3 MAP1A AT2G46170 ATCB5-C IAA20 AK3 ATGSTF11 GDH3 GLP8 AT3G06530 AtRABA5b ATYLMG1-1 AT3G07750 HCC1 MEE67 AT3G10610 AT3G12900 BRL3 CYP90D1 AT3G14390 AT3G15240 AT3G15460 RACK1C ATUNG BCAT4 AT3G20240 BE1 PLT1 ATIPT7 ATSAHH2 IDL1 CYP71B15 BR6OX2 GLV3 AtGDU6 ATHD2A emb2474 DUT1 ATPHS2 AT3G49320 ATBCAT-3 CYCD3;3 AT3G50230 AtDWF4 GATA18 LPPepsilon1 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 PIP2;5 ATPDI1 ATPURM ROC2 AT3G57010 ATMTP3 IPMI1 AHL18 IAA30 ATGSTF13 PLA UMAMIT29 APR ATMSRB4 PSBQ SAPX AT4G08780 AT4G11190 BASS5 AT4G12600 AtENODL19 ATLEUC1 CYP83A1 AT4G15770 AT4G16680 AT4G16770 ATHB-2 AT4G18440 ATIRT1 APR3 AtSWEET14 ATGDU2 ACS7 AR192 RRP41L ATEXPB3 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase ARAC7 ADS1 ATPRMT11 AT4G29690 AT4G30800 AT4G31810 CYP82C4 AT4G33905 CSDP1 AT4G36680 CYCD5;1 ATBRI1 ATIPS1 TAAC AT5G02050 HD2C TFL-1 SIR ATNAS1 PRX52 LAC12 CBB3 CYP75B1 AT5G08180 AtPPa6 ATMIPS3 AIL6 AT5G11240 AT5G12110 TRA2 LEP ATIMD1 AT5G15750 AtbZIP3 IMS3 IMS2 AT5G23830 AtENODL13 DGR2 HTA7 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G38030 AT5G38890 ATPHB3 POLA3 ATERF-9 mtACP3 CYP708 KAT5 AAP6 AtSWEET13 TIM8 PTAC15 FLA1 AT5G57170 AT5G57890 AT5G59240 GR-RBP3 PDCB1 AT5G62210 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ALX8 AT5G66530 RALFL34 AT5G67200 RLK
GO:0006790
sulfur compound metabolic process		BP5.681e-10FMO encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis CYP79F2 ATSOT17 AT1G21440 FMO ATSOT18 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase ATSMO2 AT2G31790 UMAMIT12 ATLEUD1 ATCB5-C ATGSTF11 BCAT4 ATSAHH2 CYP71B15 IPMI1 APR BASS5 ATLEUC1 CYP83A1 APR3 ATIPS1 SIR AtPPa6 ATIMD1 IMS3 IMS2 PDCB1 ALX8"
GO:0009851
auxin biosynthetic process		BP7.950e-10ATSOT17 ATSOT18 ATGSTU20 CYP79B3 ATGSTF7 ATLEUD1 ATCB5-C BCAT4 CYP71B15 TRP3 APR CYP83A1 SIR AtPPa6 IMS3 IMS2
GO:0042430
indole-containing compound metabolic pro...		BP1.011e-09ATSOT17 ATSOT18 ATGSTU20 CYP79B3 ATGSTF7 ATLEUD1 ATCB5-C BCAT4 CYP71B15 TRP3 APR CYP83A1 SIR AtPPa6 IMS3 IMS2 AT5G57890
GO:0044238
primary metabolic process		BP1.325e-09AT1G03220 AT1G03230 ATERF10 UGT1 ADS1 AT1G07070 ATPCNA1 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis AT1G15250 AT1G16220 ATSOT17 AT1G18850 AT1G20380 AT1G23100 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 AT1G32190 RACK1B AT1G50400 PLT2 AtWIP5 AT1G52930 GRI Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 EMB3108 AAC42 TIM13 ASP4 AtLPLAT2 IMP4 AtGH9C2 FMO AT1G68200 ATELF5A-3 ATH8 PG2 AT1G71870 ATSOT18 NRP1 BLH11 AHL29 ATPDI6 ATGSTU20 CYCA2;4 ATPIN4 AT2G04020 AT2G09990 ATPRMT1A AT2G19750 AT2G20450 EDA27 AT2G20940 CYP79B3 AT2G24700 encodes a protein whose sequence is similar to ACC oxidase PYL2 HDA13 ATSMO2 ATRPAC14 ATPCNA2 ATGSTF7 AT2G32060 AT2G32220 WDR55 CYP710A2 AT2G36580 AT2G37600 AT2G37690 HTA8 AT2G39795 AT2G40590 AT2G41890 AT2G42710 RPL16A ATLEUD1 AT2G44040 AT2G44230 cycp3;1 ATSPX3 MAP1A AT2G45710 ATWRKY43 AT2G46170 ATCB5-C AT2G46850 IAA20 AK3 ATGSTF11 GDH3 AT3G06530 ATYLMG1-1 AT3G07750 AT3G09680 AT3G10610 AT3G12370 AT3G13230 BRL3 CYP90D1 AT3G14390 AT3G15460 AT3G16080 JAL30 RACK1C ATUNG ATPUB29 AT3G19500 BCAT4 BE1 PLT1 AT3G23325 ATIPT7 ATSAHH2 AtGRP4 ATPHB4 AT3G28900 BR6OX2 AT3G43980 ATHD2A emb2474 DUT1 ATPHS2 AT3G47370 ATBCAT-3 CYCD3;3 AT3G50230 AtDWF4 BEH1 GATA18 LPPepsilon1 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPDI1 ATPURM UBC14 ROC2 AT3G57010 AT3G58700 IPMI1 AT3G61820 IAA30 PLA APR PSBQ AT4G10450 AtGH9C3 AT4G12600 ATLEUC1 CYP83A1 AT4G15640 AT4G15770 ATHB-2 AT4G18440 ACS7 AR192 RRP41L This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase ATPRMT11 AT4G29690 AT4G30180 AT4G30800 AT4G31020 AT4G31810 CSDP1 CYCD5;1 ATBRI1 ATIPS1 TAAC AT5G02050 HD2C SIR CBB3 AT5G07030 AT5G08180 AT5G09500 AtPPa6 ATMIPS3 AIL6 AT5G11240 AT5G11750 AT5G12110 TRA2 LEP ATIMD1 AT5G15520 AtbZIP3 AtMYB56 AT5G20160 AT5G22100 IMS3 IMS2 AT5G23690 LSU2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G39850 ATPHB3 POLA3 ATERF-9 mtACP3 CYP708 ATXTH20 KAT5 TIM8 AT5G53070 PTAC15 AT5G57890 AT5G59240 AT5G59850 AT5G60670 GR-RBP3 PDCB1 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. HIPL2 ALX8 AT5G65920 AT5G66080 AT5G66530 AT5G67200 RLK
GO:0034641
cellular nitrogen compound metabolic pro...		BP1.538e-09ATERF10 ATPCNA1 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 AT1G18850 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 RACK1B AT1G50400 PLT2 AtWIP5 AT1G52930 Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 EMB3108 AAC42 TIM13 ASP4 IMP4 CYP735A2 AT1G68200 ATSOT18 BLH11 GNR1 ATGSTU20 CYCA2;4 AT2G20450 EDA27 CYP79B3 AT2G24700 HDA13 ATRPAC14 ATPCNA2 ATGSTF7 AT2G32060 AT2G32220 WDR55 AT2G37690 HTA8 AT2G39795 AT2G42710 RPL16A ATLEUD1 ATSPX3 AT2G45710 ATWRKY43 ATCB5-C IAA20 ATGSTF11 AT3G06530 ATYLMG1-1 AT3G07750 AT3G10610 AT3G12370 AT3G13230 AT3G15460 AT3G16080 RACK1C ATUNG AT3G19500 BCAT4 PLT1 AT3G23325 ATIPT7 AtGRP4 CYP71B15 ATPHB4 AT3G28900 ATHD2A emb2474 DUT1 AT3G47370 CYCD3;3 BEH1 GATA18 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPURM ROC2 AT3G57010 AT3G58700 IAA30 APR AT4G10450 AT4G12600 CYP83A1 AT4G15640 AT4G15770 ATHB-2 AT4G18440 AR192 RRP41L This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29690 AT4G30180 AT4G30800 AT4G31810 CSDP1 CYCD5;1 AT5G02050 HD2C SIR ATNAS1 AT5G08180 AtPPa6 AIL6 AT5G11240 LEP AT5G15520 AtbZIP3 AtMYB56 AT5G20160 AT5G22100 IMS3 IMS2 AT5G23690 LSU2 ATPHB3 POLA3 ATERF-9 mtACP3 TIM8 PTAC15 AT5G57890 AT5G59240 AT5G59850 GR-RBP3 AT5G62290 ALX8 AT5G67200
GO:0034754
cellular hormone metabolic process		BP1.692e-09ATSOT17 CYP735A2 ATSOT18 ATGSTU20 CYP79B3 ATGSTF7 ATLEUD1 ATCB5-C BCAT4 ATIPT7 CYP71B15 TRP3 APR CYP83A1 SIR AtPPa6 IMS3 IMS2
GO:0044763
single-organism cellular process		BP1.872e-09ATERF10 UGT1 ADS1 AT1G06830 ATPCNA1 FMO encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis CYP79F2 ATSOT17 ATEXP11 AT1G21440 AT-EXP10 ATERF12 AT1G31660 RACK1B AT1G50400 PLT2 AT1G51380 AT1G52930 GRI Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. ARR3 EMB3108 TIM13 ASP4 AtLPLAT2 AT1G63720 FMO ATELF5A-3 AT-EXP1 ATH8 PG2 AT1G71870 CLE1 ATSOT18 ATBS1 NRP1 AHL29 ATPDI6 GNR1 ATGSTU20 AT1G78990 CYCA2;4 ATPIN4 ATEXP15 RGF3 ABCC13 AHB1 PIP2;8 ATPRMT1A EDA27 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase PYL2 HDA13 ATEXP6 ATSMO2 ATPCNA2 ATGSTF7 CLE4 CLE7 AT2G31790 WDR55 CYP710A2 AT2G36580 UMAMIT12 AT2G37690 HTA8 ATEXP4 AT2G39795 AT2G41480 AT2G41890 ATLEUD1 AT2G44040 cycp3;1 ATSPX3 ATCB5-C AK3 ATGSTF11 GDH3 GLP8 AT3G06530 AtRABA5b ATYLMG1-1 HCC1 AT3G10610 BRL3 AT3G14390 AT3G15460 RACK1C ATUNG BCAT4 AT3G20240 PLT1 ATIPT7 ATSAHH2 IDL1 CYP71B15 GLV3 ATHD2A emb2474 DUT1 ATPHS2 ATBCAT-3 CYCD3;3 AT3G50230 AtDWF4 LPPepsilon1 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 PIP2;5 ATPDI1 ATPURM ROC2 ATMTP3 IPMI1 ATGSTF13 UMAMIT29 APR PSBQ AT4G11190 BASS5 AT4G12600 ATLEUC1 CYP83A1 ATHB-2 AT4G18440 ATIRT1 APR3 ACS7 AR192 RRP41L ATEXPB3 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase ARAC7 ADS1 ATPRMT11 AT4G29690 AT4G30800 AT4G31810 AT4G33905 CSDP1 CYCD5;1 ATBRI1 ATIPS1 TAAC AT5G02050 TFL-1 SIR ATNAS1 LAC12 CBB3 AT5G08180 AtPPa6 ATMIPS3 AIL6 AT5G11240 AT5G12110 TRA2 ATIMD1 AtbZIP3 IMS3 IMS2 AtENODL13 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G38030 ATPHB3 POLA3 ATERF-9 mtACP3 CYP708 KAT5 TIM8 PTAC15 AT5G57170 AT5G57890 AT5G59240 GR-RBP3 PDCB1 AT5G62210 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ALX8 RALFL34 AT5G67200 RLK
GO:0042254
ribosome biogenesis		BP2.065e-09AT1G07070 AT1G15250 AT1G25260 AT1G31660 RACK1B AT1G52930 IMP4 AT2G20450 EDA27 AT2G40590 AT2G45710 AT3G07750 AT3G10610 AT3G12370 AT3G13230 AT3G16080 AtGRP4 AT3G28900 ATHD2A ROC2 AT4G12600 AT4G15770 AT4G22380 AT5G11240 AT5G11750 AT5G20160 AT5G22100 AT5G53070 AT5G59240 AT5G60670
GO:0009850
auxin metabolic process		BP2.125e-09ATSOT17 ATSOT18 ATGSTU20 CYP79B3 ATGSTF7 ATLEUD1 ATCB5-C BCAT4 CYP71B15 TRP3 APR CYP83A1 SIR AtPPa6 IMS3 IMS2
GO:1901135
carbohydrate derivative metabolic proces...		BP2.776e-09FMO CYP79F2 ATSOT17 AT1G21440 AT1G31660 RACK1B AT1G52930 EMB3108 FMO ATSOT18 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase AT2G31790 WDR55 UMAMIT12 AT2G37690 AT2G39795 ATLEUD1 ATSPX3 ATCB5-C ATGSTF11 AT3G06530 ATYLMG1-1 AT3G15460 RACK1C BCAT4 ATHD2A DUT1 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM IPMI1 APR BASS5 ATLEUC1 CYP83A1 AT4G18440 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 ATIPS1 AT5G02050 SIR AtPPa6 AT5G11240 ATIMD1 IMS3 IMS2 GR-RBP3
GO:1901564
organonitrogen compound metabolic proces...		BP2.784e-09UGT1 encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 AT1G31660 RACK1B AT1G52930 EMB3108 ASP4 FMO CYP735A2 ATSOT18 ATGSTU20 CYP79B3 ATSMO2 ATGSTF7 WDR55 AT2G37690 AT2G39795 ATLEUD1 AT2G44040 ATCB5-C AK3 ATGSTF11 GDH3 AT3G06530 ATYLMG1-1 AT3G10610 AT3G14390 AT3G15460 RACK1C BCAT4 ATIPT7 ATSAHH2 CYP71B15 ATHD2A DUT1 ATBCAT-3 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPURM AT3G57010 IPMI1 APR AT4G12600 ATLEUC1 CYP83A1 AT4G18440 ACS7 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 ATIPS1 AT5G02050 SIR ATNAS1 AtPPa6 AT5G11240 ATIMD1 IMS3 IMS2 AT5G57890 GR-RBP3 PDCB1
GO:0022613
ribonucleoprotein complex biogenesis		BP3.461e-09AT1G07070 AT1G15250 AT1G25260 AT1G31660 RACK1B AT1G52930 IMP4 AT2G20450 EDA27 AT2G40590 AT2G45710 AT3G07750 AT3G10610 AT3G12370 AT3G13230 AT3G16080 AtGRP4 AT3G28900 ATHD2A ROC2 AT4G12600 AT4G15770 AT4G22380 AT5G11240 AT5G11750 AT5G20160 AT5G22100 AT5G53070 AT5G59240 AT5G60670
GO:0006725
cellular aromatic compound metabolic pro...		BP4.249e-09ATERF10 UGT1 ATPCNA1 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 AT1G18850 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 RACK1B AT1G50400 PLT2 AtWIP5 AT1G52930 GRI Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 EMB3108 AAC42 TIM13 IMP4 CYP735A2 AT1G68200 ATSOT18 BLH11 ATGSTU20 CYCA2;4 AT2G20450 EDA27 CYP79B3 AT2G24700 HDA13 ATRPAC14 ATPCNA2 ATGSTF7 AT2G32060 AT2G32220 WDR55 AT2G37690 HTA8 AT2G39795 AT2G41480 AT2G42710 RPL16A ATLEUD1 ATSPX3 AT2G45710 ATWRKY43 ATCB5-C IAA20 ATGSTF11 AT3G06530 ATYLMG1-1 AT3G07750 AT3G10610 AT3G12370 AT3G13230 AT3G15460 AT3G16080 RACK1C ATUNG AT3G19500 BCAT4 PLT1 AT3G23325 ATIPT7 AtGRP4 CYP71B15 ATPHB4 AT3G28900 ATHD2A emb2474 DUT1 AT3G47370 CYCD3;3 BEH1 GATA18 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPURM ROC2 AT3G58700 IAA30 APR AT4G10450 AT4G11190 AT4G12600 CYP83A1 AT4G15640 AT4G15770 ATHB-2 AT4G18440 AR192 RRP41L This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29690 AT4G30180 AT4G30800 AT4G31810 CSDP1 CYCD5;1 AT5G02050 HD2C SIR LAC12 AT5G08180 AtPPa6 AIL6 AT5G11240 TRA2 LEP AT5G15520 AtbZIP3 AtMYB56 AT5G20160 AT5G22100 IMS3 IMS2 AT5G23690 LSU2 ATPHB3 POLA3 ATERF-9 mtACP3 TIM8 PTAC15 AT5G57890 AT5G59240 AT5G59850 GR-RBP3 AT5G62290 ALX8 AT5G67200
GO:0006626
protein targeting to mitochondrion		BP4.473e-09AT1G18850 AT1G26470 TIM13 AT2G18410 AT2G37400 AT3G07750 HCC1 emb2474 AT3G49320 AT4G15770 AR192 AT4G36680 AT5G15750 AT5G38890 ATPHB3 TIM8 GR-RBP3 AT5G62290
GO:0070585
protein localization to mitochondrion		BP4.473e-09AT1G18850 AT1G26470 TIM13 AT2G18410 AT2G37400 AT3G07750 HCC1 emb2474 AT3G49320 AT4G15770 AR192 AT4G36680 AT5G15750 AT5G38890 ATPHB3 TIM8 GR-RBP3 AT5G62290
GO:0072655
establishment of protein localization to...		BP4.473e-09AT1G18850 AT1G26470 TIM13 AT2G18410 AT2G37400 AT3G07750 HCC1 emb2474 AT3G49320 AT4G15770 AR192 AT4G36680 AT5G15750 AT5G38890 ATPHB3 TIM8 GR-RBP3 AT5G62290
GO:0046483
heterocycle metabolic process		BP6.080e-09ATERF10 ATPCNA1 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 AT1G18850 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 RACK1B AT1G50400 PLT2 AtWIP5 AT1G52930 Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 EMB3108 AAC42 TIM13 IMP4 CYP735A2 AT1G68200 ATSOT18 BLH11 ATGSTU20 CYCA2;4 AT2G20450 EDA27 CYP79B3 AT2G24700 HDA13 ATRPAC14 ATPCNA2 ATGSTF7 AT2G32060 AT2G32220 WDR55 AT2G37690 HTA8 AT2G39795 AT2G42710 RPL16A ATLEUD1 ATSPX3 AT2G45710 ATWRKY43 ATCB5-C IAA20 ATGSTF11 AT3G06530 ATYLMG1-1 AT3G07750 AT3G10610 AT3G12370 AT3G13230 AT3G15460 AT3G16080 RACK1C ATUNG AT3G19500 BCAT4 PLT1 AT3G23325 ATIPT7 AtGRP4 CYP71B15 ATPHB4 AT3G28900 ATHD2A emb2474 DUT1 AT3G47370 CYCD3;3 BEH1 GATA18 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPURM ROC2 AT3G58700 IAA30 APR AT4G10450 AT4G12600 CYP83A1 AT4G15640 AT4G15770 ATHB-2 AT4G18440 AR192 RRP41L This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29690 AT4G30180 AT4G30800 AT4G31810 CSDP1 CYCD5;1 AT5G02050 HD2C SIR ATNAS1 AT5G08180 AtPPa6 AIL6 AT5G11240 LEP AT5G15520 AtbZIP3 AtMYB56 AT5G20160 AT5G22100 IMS3 IMS2 AT5G23690 LSU2 ATPHB3 POLA3 ATERF-9 mtACP3 TIM8 PTAC15 AT5G57890 AT5G59240 AT5G59850 GR-RBP3 AT5G62290 ALX8 AT5G67200
GO:0007005
mitochondrion organization		BP6.855e-09AT1G08220 AT1G18850 AT1G26470 TIM13 AT2G18410 AT2G37400 AT3G07750 HCC1 emb2474 AT3G49320 AT4G15770 AR192 AT4G36680 AT5G15750 AT5G38890 ATPHB3 TIM8 GR-RBP3 AT5G62290
GO:1901657
glycosyl compound metabolic process		BP1.144e-08FMO CYP79F2 ATSOT17 AT1G21440 FMO ATSOT18 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase AT2G31790 UMAMIT12 ATLEUD1 ATCB5-C ATGSTF11 BCAT4 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis IPMI1 APR BASS5 ATLEUC1 CYP83A1 ATIPS1 SIR AtPPa6 ATIMD1 IMS3 IMS2
GO:0006839
mitochondrial transport		BP2.117e-08AT1G18850 AT1G26470 TIM13 AT2G18410 AT2G37400 AT3G07750 HCC1 AT3G20240 emb2474 AT3G49320 AT4G15770 AR192 AT4G36680 AT5G15750 AT5G38890 ATPHB3 TIM8 GR-RBP3 AT5G62290
GO:0006949
syncytium formation		BP3.516e-08AT-EXP10 AT-EXP1 ATEXP15 ATEXP6 ATEXP4 ATEXPB3 AT5G57170 RALFL34
GO:0006220
pyrimidine nucleotide metabolic process		BP3.965e-08AT1G31660 RACK1B AT1G52930 EMB3108 WDR55 AT2G39795 AT3G06530 ATYLMG1-1 AT3G15460 RACK1C ATHD2A DUT1 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 AT5G02050 AT5G11240 GR-RBP3
GO:0009165
nucleotide biosynthetic process		BP4.644e-08ATPCNA1 encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis AT1G31660 RACK1B AT1G52930 EMB3108 HDA13 WDR55 AT2G37690 AT2G39795 AT3G06530 ATYLMG1-1 AT3G10610 AT3G15460 RACK1C ATHD2A encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM AT4G12600 AT4G18440 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 CSDP1 AT5G02050 AT5G08180 AT5G11240 AT5G59240 GR-RBP3
GO:1901293
nucleoside phosphate biosynthetic proces...		BP5.078e-08ATPCNA1 encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis AT1G31660 RACK1B AT1G52930 EMB3108 HDA13 WDR55 AT2G37690 AT2G39795 AT3G06530 ATYLMG1-1 AT3G10610 AT3G15460 RACK1C ATHD2A encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM AT4G12600 AT4G18440 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 CSDP1 AT5G02050 AT5G08180 AT5G11240 AT5G59240 GR-RBP3
GO:0009220
pyrimidine ribonucleotide biosynthetic p...		BP7.891e-08AT1G31660 RACK1B AT1G52930 EMB3108 WDR55 AT2G39795 AT3G06530 ATYLMG1-1 AT3G15460 RACK1C ATHD2A encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 AT5G02050 AT5G11240 GR-RBP3
GO:0009218
pyrimidine ribonucleotide metabolic proc...		BP1.038e-07AT1G31660 RACK1B AT1G52930 EMB3108 WDR55 AT2G39795 AT3G06530 ATYLMG1-1 AT3G15460 RACK1C ATHD2A encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 AT5G02050 AT5G11240 GR-RBP3
GO:0050896
response to stimulus		BP1.357e-07ATFRO2 AT1G03220 AT1G03230 ATERF10 UGT1 AT1G05710 ADS1 ATSOT17 AT1G21140 RPL10B ATERF12 AGP5 RACK1B GRI ARR3 AT1G63720 ATNUDT1 AT-EXP1 PG2 AT1G71870 CLE1 ATBS1 NRP1 AT1G75590 AHL29 ATPDI6 GNR1 ATGSTU20 AT1G78990 CYCA2;4 ATPIN4 AHB1 PIP2;8 AT2G20940 LAX2 CYP79B3 MEL4 PYL2 HDA13 ATEXP6 ATPCNA2 ATGSTF7 CLE4 CLE7 HTA8 AT2G39795 ATSPX3 MAP1A AT2G46170 ATCB5-C IAA20 ATGSTF11 GDH3 AtRABA5b AT3G12900 BRL3 AT3G15240 RACK1C ATUNG ATPUB29 BCAT4 ATSAHH2 AtGRP4 CYP71B15 GLV3 DUT1 ATPHS2 ATBCAT-3 AT3G50230 AtDWF4 LPPepsilon1 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 PIP2;5 ATPDI1 ROC2 ATMTP3 IAA30 SAPX AT4G08780 AT4G11190 BASS5 AtENODL19 ATLEUC1 CYP83A1 ATHB-2 AT4G17720 ATIRT1 AR192 ATEXPB3 ARAC7 ADS1 AT4G30650 AT4G31810 CYP82C4 AT4G33905 CSDP1 ATBRI1 TAAC HD2C TFL-1 SIR ATNAS1 PRX52 CBB3 CYP75B1 AtPPa6 ATMIPS3 AIL6 AT5G12110 TRA2 LEP ATIMD1 AtbZIP3 IMS3 LSU2 DGR2 AT5G26220 HTA7 AT5G38030 AT5G38940 ATPHB3 ATERF-9 mtACP3 CYP708 KAT5 AAP6 AT5G57170 AT5G57785 AT5G57890 GR-RBP3 PDCB1 AT5G62210 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ALX8 AT5G67200 RLK
GO:0065008
regulation of biological quality		BP1.359e-07ATFRO2 AT1G06830 ATSOT17 CYP735A2 ATH8 PG2 ATSOT18 AHL29 ATPDI6 ATGSTU20 ATPIN4 CYP79B3 ATSMO2 ATGSTF7 ATLEUD1 ATCB5-C HCC1 CYP90D1 BCAT4 ATIPT7 CYP71B15 BR6OX2 GLV3 AtDWF4 TRP3 ATPDI1 AT3G57010 APR PSBQ CYP83A1 ATIRT1 APR3 ATBRI1 SIR CBB3 AtPPa6 ATMIPS3 IMS3 IMS2 AT5G62290
GO:0006221
pyrimidine nucleotide biosynthetic proce...		BP1.764e-07AT1G31660 RACK1B AT1G52930 EMB3108 WDR55 AT2G39795 AT3G06530 ATYLMG1-1 AT3G15460 RACK1C ATHD2A encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 AT5G02050 AT5G11240 GR-RBP3
GO:1901605
alpha-amino acid metabolic process		BP3.260e-07encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 ASP4 FMO ATSOT18 ATGSTU20 CYP79B3 ATGSTF7 ATLEUD1 AT2G44040 ATCB5-C AK3 AT3G14390 BCAT4 ATSAHH2 TRP3 IPMI1 APR CYP83A1 ACS7 ATIPS1 SIR AtPPa6 ATIMD1 IMS3 IMS2 AT5G57890 PDCB1
GO:0072527
pyrimidine-containing compound metabolic...		BP3.381e-07AT1G31660 RACK1B AT1G52930 EMB3108 WDR55 AT2G39795 AT3G06530 ATYLMG1-1 AT3G15460 RACK1C ATHD2A DUT1 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 AT5G02050 AT5G11240 GR-RBP3
GO:0072528
pyrimidine-containing compound biosynthe...		BP4.229e-07AT1G31660 RACK1B AT1G52930 EMB3108 WDR55 AT2G39795 AT3G06530 ATYLMG1-1 AT3G15460 RACK1C ATHD2A encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 AT5G02050 AT5G11240 GR-RBP3
GO:0022622
root system development		BP4.751e-07RACK1B PLT2 PG2 ATBS1 NRP1 ATPIN4 RGF3 LAX2 IAA20 RACK1C PLT1 IDL1 IAA30 ATHB-2 ATIRT1 ATBRI1 CBB3 AIL6 DGR2 ATPHB3 CYP708 FLA1
GO:0048364
root development		BP4.751e-07RACK1B PLT2 PG2 ATBS1 NRP1 ATPIN4 RGF3 LAX2 IAA20 RACK1C PLT1 IDL1 IAA30 ATHB-2 ATIRT1 ATBRI1 CBB3 AIL6 DGR2 ATPHB3 CYP708 FLA1
GO:0065007
biological regulation		BP5.477e-07ATFRO2 ATERF10 AT1G06830 ATPCNA1 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. ATSOT17 AT1G26470 ATERF12 AT1G32190 RACK1B AT1G50400 PLT2 AtWIP5 AT1G52930 GRI ARR3 AT1G63720 CYP735A2 AT1G68200 ATELF5A-3 AT-EXP1 ATH8 PG2 CLE1 ATSOT18 ATBS1 BLH11 AHL29 ATPDI6 ATGSTU20 AT1G78990 CYCA2;4 ATPIN4 RGF3 AHB1 ATPRMT1A LAX2 CYP79B3 AT2G24700 AtGDU4 encodes a protein whose sequence is similar to ACC oxidase PYL2 HDA13 ATSMO2 ATPCNA2 ATGSTF7 CLE4 CLE7 HTA8 AT2G39795 ATLEUD1 cycp3;1 ATSPX3 ATWRKY43 ATCB5-C IAA20 GDH3 AtRABA5b HCC1 BRL3 CYP90D1 JAL30 AT3G19500 BCAT4 PLT1 ATIPT7 CYP71B15 BR6OX2 GLV3 AtGDU6 ATBCAT-3 CYCD3;3 AT3G50230 AtDWF4 BEH1 GATA18 AT3G54390 TRP3 ATPDI1 ROC2 AT3G57010 IAA30 PLA APR PSBQ AT4G11190 CYP83A1 ATHB-2 ATIRT1 APR3 ATGDU2 RRP41L ARAC7 ADS1 ATPRMT11 AT4G30180 AT4G30800 AT4G31810 CYCD5;1 ATBRI1 HD2C TFL-1 SIR CBB3 AT5G08180 AtPPa6 ATMIPS3 AIL6 AT5G11240 LEP AtbZIP3 AtMYB56 IMS3 IMS2 LSU2 POLA3 ATERF-9 mtACP3 PTAC15 GR-RBP3 PDCB1 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ALX8 AT5G67200 RLK
GO:0006996
organelle organization		BP5.960e-07AT1G04770 UGT1 ATPCNA1 AT1G08220 AT1G18850 AT1G26470 AT1G50400 AT1G52930 G-H2AX TIM13 ATH8 NRP1 AT2G18410 ATPRMT1A EDA27 ATEXP6 ATPCNA2 WDR55 AT2G37400 AT2G37470 HTA8 AT2G39795 ATYLMG1-1 AT3G07750 HCC1 AT3G10610 ATIPT7 ATSAHH2 AT3G45930 AT3G46320 emb2474 AT3G49320 AtENODL19 AT4G15770 AR192 RRP41L ARAC7 ATPRMT11 AT4G30800 AT4G31810 CSDP1 AT4G36680 SIR AT5G08180 AT5G10390 AT5G15750 LSU2 AtENODL13 HTA7 AT5G38890 ATPHB3 POLA3 TIM8 PTAC15 AT5G59970 GR-RBP3 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ALX8 AT5G67200
GO:0044283
small molecule biosynthetic process		BP9.027e-07ADS1 encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 GRI ASP4 ATSOT18 ATGSTU20 CYP79B3 ATSMO2 ATGSTF7 CYP710A2 ATLEUD1 AT2G44040 ATCB5-C AK3 CYP90D1 AT3G14390 BCAT4 ATSAHH2 CYP71B15 BR6OX2 AtDWF4 TRP3 ATPURM AT3G57010 IPMI1 APR ATLEUC1 CYP83A1 ACS7 ATIPS1 SIR ATNAS1 CBB3 AtPPa6 ATMIPS3 TRA2 ATIMD1 IMS3 IMS2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) mtACP3 AT5G57890 PDCB1 AT5G62210 ALX8
GO:0044710
single-organism metabolic process		BP1.022e-06ATFRO2 UGT1 ADS1 ATPCNA1 FMO encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis CYP79F2 ATSOT17 AT1G21440 AT1G31660 RACK1B AT1G52930 GRI EMB3108 ASP4 AtLPLAT2 FMO CYP735A2 ATELF5A-3 ATH8 PG2 AT1G71870 ATSOT18 NRP1 ATPDI6 GNR1 ATGSTU20 CYCA2;4 ATPIN4 AT2G04020 ATPRMT1A CYP79B3 encodes a protein whose sequence is similar to ACC oxidase PYL2 HDA13 ATSMO2 ATPCNA2 ATGSTF7 AT2G31790 WDR55 CYP710A2 AT2G36580 UMAMIT12 AT2G37690 HTA8 AT2G39795 AT2G41480 ATLEUD1 AT2G44040 ATSPX3 AT2G46170 ATCB5-C AK3 ATGSTF11 GDH3 AT3G06530 ATYLMG1-1 HCC1 AT3G10610 AT3G12900 CYP90D1 AT3G14390 AT3G15460 RACK1C ATUNG BCAT4 ATIPT7 ATSAHH2 CYP71B15 BR6OX2 ATHD2A DUT1 ATPHS2 ATBCAT-3 CYCD3;3 AtDWF4 LPPepsilon1 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPDI1 ATPURM AT3G57010 IPMI1 ATGSTF13 PLA APR ATMSRB4 SAPX AT4G08780 AT4G11190 BASS5 AT4G12600 ATLEUC1 CYP83A1 AT4G16770 AT4G18440 APR3 ACS7 AR192 RRP41L This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase ATPRMT11 AT4G29690 AT4G30800 AT4G31810 CYP82C4 AT4G33905 CSDP1 CYCD5;1 ATBRI1 ATIPS1 AT5G02050 SIR ATNAS1 PRX52 LAC12 CBB3 CYP75B1 AT5G08180 AtPPa6 ATMIPS3 AT5G11240 AT5G12110 TRA2 ATIMD1 IMS3 IMS2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) POLA3 mtACP3 CYP708 KAT5 PTAC15 AT5G57890 AT5G59240 GR-RBP3 PDCB1 AT5G62210 ALX8 AT5G66530 AT5G67200
GO:0009260
ribonucleotide biosynthetic process		BP1.273e-06AT1G31660 RACK1B AT1G52930 EMB3108 WDR55 AT2G37690 AT2G39795 AT3G06530 ATYLMG1-1 AT3G15460 RACK1C ATHD2A encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM AT4G18440 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 AT5G02050 AT5G11240 GR-RBP3
GO:0046390
ribose phosphate biosynthetic process		BP1.273e-06AT1G31660 RACK1B AT1G52930 EMB3108 WDR55 AT2G37690 AT2G39795 AT3G06530 ATYLMG1-1 AT3G15460 RACK1C ATHD2A encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM AT4G18440 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 AT5G02050 AT5G11240 GR-RBP3
GO:1901362
organic cyclic compound biosynthetic pro...		BP1.317e-06ATERF10 ATPCNA1 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 AT1G26470 ATERF12 NRPA2 AT1G31660 RACK1B PLT2 AtWIP5 AT1G52930 GRI Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. ARR3 EMB3108 AAC42 CYP735A2 AT1G68200 ATSOT18 BLH11 ATGSTU20 CYP79B3 AT2G24700 HDA13 ATSMO2 ATRPAC14 ATPCNA2 ATGSTF7 WDR55 CYP710A2 AT2G37690 AT2G39795 AT2G42710 ATLEUD1 ATSPX3 ATWRKY43 ATCB5-C IAA20 AT3G06530 ATYLMG1-1 AT3G10610 AT3G12370 CYP90D1 AT3G15460 RACK1C AT3G19500 BCAT4 PLT1 CYP71B15 BR6OX2 ATHD2A AtDWF4 BEH1 GATA18 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPURM AT3G57010 IAA30 APR AT4G11190 AT4G12600 CYP83A1 ATHB-2 AT4G18440 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G30180 AT4G31810 CSDP1 AT5G02050 HD2C SIR ATNAS1 CBB3 AT5G08180 AtPPa6 AIL6 AT5G11240 TRA2 LEP AtbZIP3 AtMYB56 IMS3 IMS2 LSU2 POLA3 ATERF-9 PTAC15 AT5G57890 AT5G59240 GR-RBP3 ALX8 AT5G67200
GO:0006520
cellular amino acid metabolic process		BP1.318e-06UGT1 encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 ASP4 FMO ATSOT18 ATGSTU20 CYP79B3 ATGSTF7 ATLEUD1 AT2G44040 ATCB5-C AK3 GDH3 AT3G14390 BCAT4 ATSAHH2 ATBCAT-3 TRP3 IPMI1 APR ATLEUC1 CYP83A1 ACS7 ATIPS1 SIR AtPPa6 ATIMD1 IMS3 IMS2 AT5G57890 PDCB1
GO:0044271
cellular nitrogen compound biosynthetic ...		BP1.705e-06ATERF10 ATPCNA1 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 AT1G26470 ATERF12 NRPA2 AT1G31660 RACK1B PLT2 AtWIP5 AT1G52930 Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. ARR3 EMB3108 AAC42 CYP735A2 AT1G68200 ATSOT18 BLH11 GNR1 ATGSTU20 CYP79B3 AT2G24700 HDA13 ATRPAC14 ATPCNA2 ATGSTF7 WDR55 AT2G37690 AT2G39795 AT2G42710 ATLEUD1 ATSPX3 ATWRKY43 ATCB5-C IAA20 AT3G06530 ATYLMG1-1 AT3G10610 AT3G12370 AT3G15460 RACK1C AT3G19500 BCAT4 PLT1 CYP71B15 ATHD2A BEH1 GATA18 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPURM AT3G57010 IAA30 APR AT4G12600 CYP83A1 ATHB-2 AT4G18440 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G30180 AT4G31810 CSDP1 AT5G02050 HD2C SIR ATNAS1 AT5G08180 AtPPa6 AIL6 AT5G11240 LEP AtbZIP3 AtMYB56 IMS3 IMS2 LSU2 POLA3 ATERF-9 PTAC15 AT5G57890 AT5G59240 GR-RBP3 ALX8 AT5G67200
GO:0044085
cellular component biogenesis		BP1.866e-06UGT1 AT1G07070 AT1G08220 AT1G15250 AT1G25260 AT1G31660 RACK1B AT1G52930 G-H2AX IMP4 PG2 NRP1 CYCA2;4 AT2G20450 EDA27 ATEXP6 AtXTH32 AT2G37470 AT2G40590 AT2G45710 AT3G07750 HCC1 AT3G10610 AT3G12370 AT3G13230 AT3G16080 AtGRP4 AT3G28900 ATHD2A AtXTH31 AT3G45930 AT3G46320 ROC2 AT4G12600 AtENODL19 AT4G15770 AT4G22380 ATBRI1 CBB3 AT5G10390 AT5G11240 AT5G11750 AT5G20160 AT5G22100 HTA7 AT5G53070 AT5G59240 AT5G59970 AT5G60670 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ALX8
GO:0009117
nucleotide metabolic process		BP1.946e-06ATPCNA1 encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis AT1G31660 RACK1B AT1G52930 EMB3108 CYP79B3 HDA13 WDR55 AT2G37690 AT2G39795 ATGSTF11 AT3G06530 ATYLMG1-1 AT3G10610 AT3G15460 RACK1C ATHD2A DUT1 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM AT4G12600 CYP83A1 AT4G18440 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29690 AT4G31810 CSDP1 AT5G02050 AT5G08180 AT5G11240 AT5G59240 GR-RBP3
GO:0006753
nucleoside phosphate metabolic process		BP2.190e-06ATPCNA1 encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis AT1G31660 RACK1B AT1G52930 EMB3108 CYP79B3 HDA13 WDR55 AT2G37690 AT2G39795 ATGSTF11 AT3G06530 ATYLMG1-1 AT3G10610 AT3G15460 RACK1C ATHD2A DUT1 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM AT4G12600 CYP83A1 AT4G18440 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29690 AT4G31810 CSDP1 AT5G02050 AT5G08180 AT5G11240 AT5G59240 GR-RBP3
GO:0043412
macromolecule modification		BP2.336e-06ATPCNA1 AT1G16220 AT1G18850 AT1G25260 RPL10B AT1G32190 RACK1B AT1G52930 G-H2AX TIM13 IMP4 ATELF5A-3 ATH8 AHL29 CYCA2;4 AT2G04020 ATPRMT1A AT2G20450 EDA27 HDA13 ATPCNA2 AT2G32060 AT2G32220 HTA8 AT2G39795 AT2G41890 RPL16A AT2G44230 cycp3;1 MAP1A AT2G45710 AT2G46850 AT3G06530 AT3G07750 AT3G10610 BRL3 AT3G15460 AT3G16080 RACK1C ATPUB29 ATPHB4 AT3G28900 ATHD2A emb2474 AT3G47370 CYCD3;3 AT3G50230 LPPepsilon1 ROC2 AT3G58700 PSBQ AT4G10450 AT4G12600 AT4G15640 AT4G15770 RRP41L ATPRMT11 AT4G30800 AT4G31020 AT4G31810 CYCD5;1 AT5G02050 HD2C AT5G08180 AT5G15520 AT5G20160 ATPHB3 POLA3 TIM8 AT5G59850 GR-RBP3 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. AT5G65920 AT5G66080 AT5G67200 RLK
GO:0043436
oxoacid metabolic process		BP2.401e-06UGT1 ADS1 FMO encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis CYP79F2 ATSOT17 AT1G21440 GRI ASP4 FMO AT1G71870 ATSOT18 NRP1 GNR1 ATGSTU20 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase PYL2 ATSMO2 ATGSTF7 AT2G31790 AT2G36580 UMAMIT12 ATLEUD1 AT2G44040 ATCB5-C AK3 ATGSTF11 GDH3 HCC1 AT3G14390 BCAT4 ATSAHH2 CYP71B15 ATBCAT-3 TRP3 IPMI1 APR BASS5 ATLEUC1 CYP83A1 ACS7 AT4G31810 AT4G33905 ATIPS1 SIR ATNAS1 AtPPa6 TRA2 ATIMD1 IMS3 IMS2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) mtACP3 KAT5 AT5G57890 PDCB1 AT5G62210 ALX8
GO:0006139
nucleobase-containing compound metabolic...		BP2.444e-06ATERF10 ATPCNA1 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis AT1G18850 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 RACK1B AT1G50400 PLT2 AtWIP5 AT1G52930 Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 EMB3108 AAC42 TIM13 IMP4 AT1G68200 BLH11 CYCA2;4 AT2G20450 EDA27 CYP79B3 AT2G24700 HDA13 ATRPAC14 ATPCNA2 AT2G32060 AT2G32220 WDR55 AT2G37690 HTA8 AT2G39795 AT2G42710 RPL16A ATSPX3 AT2G45710 ATWRKY43 IAA20 ATGSTF11 AT3G06530 ATYLMG1-1 AT3G07750 AT3G10610 AT3G12370 AT3G13230 AT3G15460 AT3G16080 RACK1C ATUNG AT3G19500 PLT1 AT3G23325 ATIPT7 AtGRP4 ATPHB4 AT3G28900 ATHD2A emb2474 DUT1 AT3G47370 CYCD3;3 BEH1 GATA18 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM ROC2 AT3G58700 IAA30 AT4G10450 AT4G12600 CYP83A1 AT4G15640 AT4G15770 ATHB-2 AT4G18440 AR192 RRP41L This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29690 AT4G30180 AT4G30800 AT4G31810 CSDP1 CYCD5;1 AT5G02050 HD2C AT5G08180 AIL6 AT5G11240 LEP AT5G15520 AtbZIP3 AtMYB56 AT5G20160 AT5G22100 AT5G23690 LSU2 ATPHB3 POLA3 ATERF-9 mtACP3 TIM8 PTAC15 AT5G59240 AT5G59850 GR-RBP3 AT5G62290 ALX8 AT5G67200
GO:0006082
organic acid metabolic process		BP2.493e-06UGT1 ADS1 FMO encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis CYP79F2 ATSOT17 AT1G21440 GRI ASP4 FMO AT1G71870 ATSOT18 NRP1 GNR1 ATGSTU20 CYP79B3 encodes a protein whose sequence is similar to ACC oxidase PYL2 ATSMO2 ATGSTF7 AT2G31790 AT2G36580 UMAMIT12 ATLEUD1 AT2G44040 ATCB5-C AK3 ATGSTF11 GDH3 HCC1 AT3G14390 BCAT4 ATSAHH2 CYP71B15 ATBCAT-3 TRP3 IPMI1 APR BASS5 ATLEUC1 CYP83A1 ACS7 AT4G31810 AT4G33905 ATIPS1 SIR ATNAS1 AtPPa6 TRA2 ATIMD1 IMS3 IMS2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) mtACP3 KAT5 AT5G57890 PDCB1 AT5G62210 ALX8
GO:0016070
RNA metabolic process		BP2.783e-06ATERF10 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. AT1G18850 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 RACK1B PLT2 AtWIP5 AT1G52930 Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 AAC42 TIM13 IMP4 AT1G68200 BLH11 AT2G20450 EDA27 AT2G24700 HDA13 ATRPAC14 AT2G32060 AT2G32220 HTA8 AT2G42710 RPL16A ATSPX3 AT2G45710 ATWRKY43 IAA20 AT3G06530 AT3G07750 AT3G10610 AT3G12370 AT3G13230 AT3G15460 AT3G16080 RACK1C AT3G19500 PLT1 AT3G23325 ATIPT7 AtGRP4 ATPHB4 AT3G28900 ATHD2A emb2474 AT3G47370 BEH1 GATA18 AT3G54390 ROC2 AT3G58700 IAA30 AT4G10450 AT4G12600 AT4G15640 AT4G15770 ATHB-2 RRP41L This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G30180 AT4G30800 CSDP1 AT5G02050 HD2C AT5G08180 AIL6 AT5G11240 LEP AT5G15520 AtbZIP3 AtMYB56 AT5G20160 AT5G22100 AT5G23690 LSU2 ATPHB3 POLA3 ATERF-9 mtACP3 TIM8 PTAC15 AT5G59240 AT5G59850 AT5G62290 ALX8 AT5G67200
GO:0009628
response to abiotic stimulus		BP3.316e-06AT1G03220 AT1G03230 RPL10B ARR3 AT1G63720 AT-EXP1 PG2 NRP1 AHL29 ATPDI6 GNR1 ATGSTU20 ATPIN4 AHB1 AT2G20940 MEL4 ATEXP6 ATGSTF7 AT2G39795 MAP1A AT2G46170 IAA20 BCAT4 ATSAHH2 AtGRP4 CYP71B15 GLV3 ATPHS2 LPPepsilon1 TRP3 ATPDI1 IAA30 AtENODL19 ATLEUC1 CYP83A1 ATHB-2 ATIRT1 AR192 AT4G30650 AT4G31810 CSDP1 ATBRI1 TAAC HD2C TFL-1 SIR CBB3 CYP75B1 AtPPa6 ATIMD1 AtbZIP3 IMS3 DGR2 HTA7 AT5G38940 ATPHB3 KAT5 AAP6 AT5G57785 GR-RBP3 AT5G62210 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ALX8
GO:0072330
monocarboxylic acid biosynthetic process		BP3.506e-06ADS1 ATSOT17 GRI ATSOT18 ATGSTU20 CYP79B3 ATSMO2 ATGSTF7 ATLEUD1 ATCB5-C BCAT4 CYP71B15 TRP3 APR CYP83A1 ACS7 SIR ATNAS1 AtPPa6 TRA2 IMS3 IMS2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) mtACP3 AT5G62210 ALX8
GO:1901607
alpha-amino acid biosynthetic process		BP3.644e-06encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 ATSOT18 CYP79B3 ATLEUD1 AT2G44040 AK3 AT3G14390 BCAT4 ATSAHH2 TRP3 IPMI1 APR CYP83A1 ACS7 ATIPS1 SIR AtPPa6 ATIMD1 IMS3 IMS2 AT5G57890
GO:0016043
cellular component organization		BP4.063e-06AT1G04770 UGT1 ATPCNA1 AT1G08220 AT1G18850 ATEXP11 AT1G26470 AT-EXP10 RACK1B AT1G50400 AT1G52930 Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX TIM13 ATELF5A-3 AT-EXP1 ATH8 PG2 NRP1 CYCA2;4 ATPIN4 ATEXP15 AT2G18410 ATPRMT1A EDA27 CYP79B3 ATEXP6 ATPCNA2 WDR55 AT2G37400 AT2G37470 HTA8 ATEXP4 AT2G39795 AT2G41480 ATYLMG1-1 AT3G07750 HCC1 AT3G10610 AT3G15680 ATIPT7 ATSAHH2 AtGRP4 CYP71B15 AT3G45930 AT3G46320 emb2474 AT3G49320 AtDWF4 TRP3 UMAMIT29 AtENODL19 AT4G15770 ATHB-2 AR192 RRP41L ATEXPB3 ARAC7 ATPRMT11 AT4G30800 AT4G31810 CSDP1 AT4G36680 ATBRI1 SIR ATNAS1 CBB3 AT5G08180 AtPPa6 AT5G10390 AT5G15750 LSU2 AtENODL13 HTA7 AT5G38890 ATPHB3 POLA3 TIM8 PTAC15 AT5G59850 AT5G59970 GR-RBP3 PDCB1 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ALX8 AT5G67200
GO:0044260
cellular macromolecule metabolic process		BP4.724e-06ATERF10 AT1G07070 ATPCNA1 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. AT1G15250 AT1G16220 AT1G18850 AT1G23100 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 AT1G32190 RACK1B AT1G50400 PLT2 AtWIP5 AT1G52930 Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 AAC42 TIM13 IMP4 AT1G68200 ATELF5A-3 ATH8 PG2 BLH11 AHL29 ATPDI6 ATGSTU20 CYCA2;4 ATEXP15 AT2G04020 AT2G09990 ATPRMT1A AT2G19750 AT2G20450 EDA27 AT2G20940 MEL4 AT2G24700 HDA13 ATRPAC14 ATPCNA2 AT2G32060 AT2G32220 AtXTH32 AT2G37600 HTA8 AT2G39795 AT2G40590 AT2G41890 AT2G42710 RPL16A AT2G44230 cycp3;1 ATSPX3 MAP1A AT2G45710 ATWRKY43 AT2G46850 IAA20 ATGSTF11 AT3G06530 AT3G07750 AT3G09680 AT3G10610 AT3G12370 AT3G13230 BRL3 AT3G15460 AT3G16080 JAL30 RACK1C ATUNG ATPUB29 AT3G19500 PLT1 AT3G23325 ATIPT7 AtGRP4 ATPHB4 AT3G28900 AT3G43980 ATHD2A AtXTH31 emb2474 DUT1 ATPHS2 AT3G47370 CYCD3;3 AT3G50230 BEH1 GATA18 LPPepsilon1 AT3G54390 ATPDI1 UBC14 ROC2 AT3G58700 IAA30 PSBQ AT4G10450 AT4G12600 ATLEUC1 CYP83A1 AT4G15640 AT4G15770 ATHB-2 AR192 RRP41L This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase ATPRMT11 AT4G30180 AT4G30800 AT4G31020 AT4G31810 CSDP1 CYCD5;1 TAAC AT5G02050 HD2C AT5G08180 AT5G09500 AIL6 AT5G11240 AT5G11750 AT5G12110 LEP AT5G15520 AtbZIP3 AtMYB56 AT5G20160 AT5G22100 AT5G23690 LSU2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G39850 ATPHB3 POLA3 ATERF-9 mtACP3 ATXTH20 TIM8 AT5G53070 PTAC15 AT5G59240 AT5G59850 AT5G60670 GR-RBP3 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ALX8 AT5G65920 AT5G66080 AT5G67200 RLK
GO:0018130
heterocycle biosynthetic process		BP5.505e-06ATERF10 ATPCNA1 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 AT1G26470 ATERF12 NRPA2 AT1G31660 RACK1B PLT2 AtWIP5 AT1G52930 Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. ARR3 EMB3108 AAC42 CYP735A2 AT1G68200 ATSOT18 BLH11 ATGSTU20 CYP79B3 AT2G24700 HDA13 ATRPAC14 ATPCNA2 ATGSTF7 WDR55 AT2G37690 AT2G39795 AT2G42710 ATLEUD1 ATSPX3 ATWRKY43 ATCB5-C IAA20 AT3G06530 ATYLMG1-1 AT3G10610 AT3G12370 AT3G15460 RACK1C AT3G19500 BCAT4 PLT1 CYP71B15 ATHD2A BEH1 GATA18 AT3G54390 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis TRP3 ATPURM IAA30 APR AT4G12600 CYP83A1 ATHB-2 AT4G18440 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G30180 AT4G31810 CSDP1 AT5G02050 HD2C SIR ATNAS1 AT5G08180 AtPPa6 AIL6 AT5G11240 LEP AtbZIP3 AtMYB56 IMS3 IMS2 LSU2 POLA3 ATERF-9 PTAC15 AT5G57890 AT5G59240 GR-RBP3 ALX8 AT5G67200
GO:0008652
cellular amino acid biosynthetic process		BP5.645e-06encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 ATSOT18 CYP79B3 ATLEUD1 AT2G44040 AK3 AT3G14390 BCAT4 ATSAHH2 TRP3 IPMI1 APR ATLEUC1 CYP83A1 ACS7 ATIPS1 SIR AtPPa6 ATIMD1 IMS3 IMS2 AT5G57890 PDCB1
GO:0043170
macromolecule metabolic process		BP5.842e-06AT1G03220 AT1G03230 ATERF10 AT1G07070 ATPCNA1 encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. AT1G15250 AT1G16220 AT1G18850 AT1G20380 AT1G23100 AT1G25260 AT1G26470 RPL10B ATERF12 NRPA2 AT1G31660 AT1G32190 RACK1B AT1G50400 PLT2 AtWIP5 AT1G52930 Protein of unknown function that is homologous to At5g41010, which encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB12. G-H2AX ARR3 AAC42 TIM13 IMP4 AT1G68200 ATELF5A-3 ATH8 PG2 BLH11 AHL29 ATPDI6 ATGSTU20 CYCA2;4 ATPIN4 ATEXP15 AT2G04020 RGF3 AT2G09990 ATPRMT1A AT2G19750 AT2G20450 EDA27 AT2G20940 MEL4 AT2G24700 HDA13 ATRPAC14 ATPCNA2 AT2G32060 AT2G32220 AtXTH32 AT2G37600 HTA8 AT2G39795 AT2G40590 AT2G41890 AT2G42710 RPL16A AT2G44230 cycp3;1 ATSPX3 MAP1A AT2G45710 ATWRKY43 AT2G46850 IAA20 ATGSTF11 AT3G06530 AT3G07750 AT3G09680 AT3G10610 AT3G12370 AT3G13230 BRL3 AT3G15460 AT3G16080 JAL30 RACK1C ATUNG ATPUB29 AT3G19500 PLT1 AT3G23325 ATIPT7 AtGRP4 ATPHB4 AT3G28900 AT3G43980 ATHD2A AtXTH31 emb2474 DUT1 ATPHS2 AT3G47370 CYCD3;3 AT3G50230 BEH1 GATA18 LPPepsilon1 AT3G54390 ATPDI1 UBC14 ROC2 AT3G58700 AT3G61820 IAA30 PSBQ AT4G10450 AT4G12600 ATLEUC1 CYP83A1 AT4G15640 AT4G15770 ATHB-2 AR192 RRP41L This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase ATPRMT11 AT4G30180 AT4G30800 AT4G31020 AT4G31810 CSDP1 CYCD5;1 ATBRI1 TAAC AT5G02050 HD2C CBB3 AT5G07030 AT5G08180 AT5G09500 AIL6 AT5G11240 AT5G11750 AT5G12110 LEP AT5G15520 AtbZIP3 AtMYB56 AT5G20160 AT5G22100 AT5G23690 LSU2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) AT5G39850 ATPHB3 POLA3 ATERF-9 mtACP3 ATXTH20 TIM8 AT5G53070 PTAC15 AT5G59240 AT5G59850 AT5G60670 GR-RBP3 AT5G62290 Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. ALX8 AT5G65920 AT5G66080 AT5G67200 RLK
GO:0016053
organic acid biosynthetic process		BP5.884e-06ADS1 encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 GRI ASP4 ATSOT18 ATGSTU20 CYP79B3 ATSMO2 ATGSTF7 ATLEUD1 AT2G44040 ATCB5-C AK3 AT3G14390 BCAT4 ATSAHH2 CYP71B15 TRP3 IPMI1 APR ATLEUC1 CYP83A1 ACS7 ATIPS1 SIR ATNAS1 AtPPa6 TRA2 ATIMD1 IMS3 IMS2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) mtACP3 AT5G57890 PDCB1 AT5G62210 ALX8
GO:0046394
carboxylic acid biosynthetic process		BP5.884e-06ADS1 encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis ATSOT17 GRI ASP4 ATSOT18 ATGSTU20 CYP79B3 ATSMO2 ATGSTF7 ATLEUD1 AT2G44040 ATCB5-C AK3 AT3G14390 BCAT4 ATSAHH2 CYP71B15 TRP3 IPMI1 APR ATLEUC1 CYP83A1 ACS7 ATIPS1 SIR ATNAS1 AtPPa6 TRA2 ATIMD1 IMS3 IMS2 encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) mtACP3 AT5G57890 PDCB1 AT5G62210 ALX8
GO:0009825
multidimensional cell growth		BP6.383e-06ATEXP11 AT-EXP10 PG2 ATPIN4 ATEXP15 ATEXP6 ATEXP4 ATBRI1 CBB3
GO:0055086
nucleobase-containing small molecule met...		BP8.809e-06ATPCNA1 encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis AT1G31660 RACK1B AT1G52930 EMB3108 CYP79B3 HDA13 WDR55 AT2G37690 AT2G39795 ATGSTF11 AT3G06530 ATYLMG1-1 AT3G10610 AT3G15460 RACK1C ATHD2A DUT1 encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM AT4G12600 CYP83A1 AT4G18440 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G29690 AT4G31810 CSDP1 AT5G02050 AT5G08180 AT5G11240 AT5G59240 GR-RBP3
GO:0009259
ribonucleotide metabolic process		BP9.859e-06AT1G31660 RACK1B AT1G52930 EMB3108 WDR55 AT2G37690 AT2G39795 AT3G06530 ATYLMG1-1 AT3G15460 RACK1C ATHD2A encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis ATPURM AT4G18440 AR192 This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase AT4G31810 AT5G02050 AT5G11240 GR-RBP3
GO:0009828
plant-type cell wall loosening		BP1.013e-05ATEXP11 AT-EXP10 AT-EXP1 ATEXP15 ATEXP6 ATEXP4 ATEXPB3