4.0:Information of module
stele pSHR 3h BL
In comparison with root cap pGL2(root cap pGL2BRI1) 3h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 7.500e-23
GO:0042221 response to chemical BP 2.339e-17
GO:0009605 response to external stimulus BP 2.422e-15
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 1.246e-23
GO:0043414 macromolecule methylation BP 1.013e-19
GO:0032259 methylation BP 2.060e-19
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
stele pSHR 3h BL		 Log2 signal ratio
root cap pGL2(root cap pGL2BRI1) 3h BL
1 AT3G05730 AT3G05730 [LOCATED IN: endomembrane system] 3.970 1.283
2 AT4G08620 AT4G08620 SULTR1;1, sulphate transporter 1;1 3.663 2.355
3 AT1G22900 AT1G22900 [Disease resistance-responsive (dirigent-like protein) family protein] 3.193 3.185
4 AT2G21040 AT2G21040 [Calcium-dependent lipid-binding (CaLB domain) family protein] 3.187 2.654
5 AT2G20880 AT2G20880 AtERF53, ERF53, ERF domain 53 3.168 1.882
6 AT1G66930 AT1G66930 [Protein kinase superfamily protein] 2.989 1.198
7 AT4G13090 AT4G13090 XTH2, xyloglucan endotransglucosylase/hydrolase 2 2.988 3.233
8 AT2G37900 AT2G37900 [Major facilitator superfamily protein] 2.935 -0.101
9 AT4G35770 AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 2.849 -0.224
10 AT3G27690 AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 2.822 -1.021
11 AT5G25250 AT5G25250 FLOT1, flotillin 1 2.653 2.346
12 AT5G64110 AT5G64110 [Peroxidase superfamily protein] 2.567 0.726
13 AT3G18890 AT3G18890 AtTic62, translocon at the inner envelope membrane of chloroplasts 62, Tic62, translocon at the inner envelope membrane of chloroplasts 62 2.551 -0.762
14 AT5G48430 AT5G48430 [Eukaryotic aspartyl protease family protein] 2.512 3.369
15 AT2G17680 AT2G17680 unknown 2.484 2.055
16 AT1G08090 AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 2.416 2.768
17 AT4G04990 AT4G04990 unknown 2.388 0.307
18 AT1G10070 AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 2.377 0.103
19 AT1G10550 AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 2.318 0.967
20 AT1G22890 AT1G22890 unknown 2.136 2.960
21 AT1G72620 AT1G72620 [alpha/beta-Hydrolases superfamily protein] 2.135 1.138
22 AT3G48740 AT3G48740 AtSWEET11, SWEET11 2.092 2.273
23 AT5G23660 AT5G23660 AtSWEET12, MTN3, homolog of Medicago truncatula MTN3, SWEET12 2.086 1.382
24 AT2G14247 AT2G14247 [Expressed protein] 2.064 0.997
25 AT1G79320 AT1G79320 AtMC6, metacaspase 6, AtMCP2c, metacaspase 2c, MC6, metacaspase 6, MCP2c, metacaspase 2c 2.052 2.341
26 AT2G05540 AT2G05540 [Glycine-rich protein family] 2.029 -0.750
27 AT3G63350 AT3G63350 AT-HSFA7B, HSFA7B, HEAT SHOCK TRANSCRIPTION FACTOR A7B 1.982 0.393
28 AT4G21870 AT4G21870 [HSP20-like chaperones superfamily protein] 1.968 4.046
29 AT1G64590 AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] 1.958 -1.343
30 AT3G16530 AT3G16530 [Legume lectin family protein] 1.942 2.645
31 AT2G26820 AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 1.857 2.571
32 AT5G45480 AT5G45480 unknown 1.841 1.159
33 AT1G19530 AT1G19530 unknown 1.829 1.273
34 AT3G18200 AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 1.809 0.577
35 AT1G13110 AT1G13110 CYP71B7, cytochrome P450, family 71 subfamily B, polypeptide 7 1.796 2.168
36 AT3G01290 AT3G01290 AtHIR2, HIR2, hypersensitive induced reaction 2 1.795 1.752
37 AT1G28160 AT1G28160 [Integrase-type DNA-binding superfamily protein] 1.766 0.822
38 AT5G44417 AT5G44417 [pseudogene] 1.751 0.776
39 AT1G21400 AT1G21400 [Thiamin diphosphate-binding fold (THDP-binding) superfamily protein] 1.748 0.428
40 AT5G07330 AT5G07330 unknown 1.737 -0.101
41 AT4G08300 AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 1.678 1.332
42 AT5G49360 AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 1.676 1.534
43 AT2G42060 AT2G42060 [Cysteine/Histidine-rich C1 domain family protein] 1.675 2.310
44 AT4G37390 AT4G37390 AUR3, AUXIN UPREGULATED 3, BRU6, GH3-2, GH3.2, YDK1, YADOKARI 1 1.671 1.756
45 AT5G24060 AT5G24060 [Pentatricopeptide repeat (PPR) superfamily protein] 1.645 0.210
46 AT2G18050 AT2G18050 HIS1-3, histone H1-3 1.629 -0.582
47 AT4G37220 AT4G37220 [Cold acclimation protein WCOR413 family] 1.621 1.165
48 AT4G14630 AT4G14630 GLP9, germin-like protein 9 1.619 3.143
49 AT1G28330 AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 1.619 0.132
50 AT2G22980 AT2G22980 SCPL13, serine carboxypeptidase-like 13 1.597 -0.269
51 AT2G46850 AT2G46850 [Protein kinase superfamily protein] -3.703 -1.915
52 AT3G26120 AT3G26120 terminal EAR1-like 1 -3.345 -1.577
53 AT1G70680 AT1G70680 [Caleosin-related family protein] -2.846 -0.101
54 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -2.816 -2.057
55 AT3G50750 AT3G50750 BEH1, BES1/BZR1 homolog 1 -2.787 -0.652
56 AT1G51220 AT1G51220 AtWIP5, WIP5, WIP domain protein 5 -2.748 -1.445
57 AT3G12900 AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -2.748 -1.079
58 AT2G04020 AT2G04020 [GDSL-like Lipase/Acylhydrolase superfamily protein] -2.503 -0.101
59 AT5G22580 AT5G22580 [Stress responsive A/B Barrel Domain] -2.423 -1.781
60 AT3G19500 AT3G19500 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -2.394 -1.298
61 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -2.310 -2.203
62 AT5G57785 AT5G57785 unknown -2.235 -2.583
63 AT4G33800 AT4G33800 unknown -2.178 -1.027
64 AT2G46990 AT2G46990 IAA20, indole-3-acetic acid inducible 20 -2.117 -1.577
65 AT3G62760 AT3G62760 ATGSTF13 -2.091 -1.206
66 AT4G28250 AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 -2.090 -1.324
67 AT3G19710 AT3G19710 BCAT4, branched-chain aminotransferase4 -2.074 -1.843
68 AT5G48070 AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 -2.002 -0.699
69 AT5G38020 AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -1.963 -2.401
70 AT1G65860 AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 -1.957 0.358
71 AT5G26220 AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -1.947 0.875
72 AT1G74500 AT1G74500 ATBS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, bHLH135, basic helix-loop-helix protein 135, BS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, PRE3, PACLOBUTRAZOL RESISTANCE 3, TMO7, TARGET OF MONOPTEROS 7 -1.943 -0.674
73 AT3G09120 AT3G09120 unknown -1.821 0.428
74 AT3G30725 AT3G30725 AtGDU6, glutamine dumper 6, GDU6, glutamine dumper 6 -1.779 -1.328
75 AT4G25010 AT4G25010 AtSWEET14, SWEET14 -1.746 -1.401
76 AT1G05835 AT1G05835 [PHD finger protein] -1.717 -1.913
77 AT3G59340 AT3G59340 unknown -1.703 -0.979
78 AT1G68825 AT1G68825 DVL5, DEVIL 5, RTFL15, ROTUNDIFOLIA like 15 -1.668 -0.077
79 AT5G14200 AT5G14200 ATIMD1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, IMD1, isopropylmalate dehydrogenase 1 -1.643 -0.965
80 AT5G10510 AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -1.641 -1.019
81 AT1G69530 AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 -1.547 -0.849
82 AT3G23570 AT3G23570 [alpha/beta-Hydrolases superfamily protein] -1.545 -1.491
83 AT4G08780 AT4G08780 [Peroxidase superfamily protein] -1.536 0.265
84 AT3G54600 AT3G54600 DJ-1f, DJ1F -1.533 -1.400
85 AT2G31790 AT2G31790 [UDP-Glycosyltransferase superfamily protein] -1.525 -0.951
86 AT1G78370 AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 -1.500 -1.457
87 AT3G16300 AT3G16300 [Uncharacterised protein family (UPF0497)] -1.481 -1.861
88 AT5G62210 AT5G62210 [Embryo-specific protein 3, (ATS3)] -1.467 -1.282
89 AT3G60870 AT3G60870 AHL18, AT-hook motif nuclear-localized protein 18 -1.443 -1.092
90 AT2G17080 AT2G17080 unknown -1.404 -0.398
91 AT5G23010 AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -1.364 -0.840
92 AT4G11190 AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] -1.350 -1.984
93 AT1G51190 AT1G51190 PLT2, PLETHORA 2 -1.343 -1.044
94 AT4G30650 AT4G30650 [Low temperature and salt responsive protein family] -1.332 -0.151
95 AT1G21140 AT1G21140 [Vacuolar iron transporter (VIT) family protein] -1.279 -0.416
96 AT4G30180 AT4G30180 [sequence-specific DNA binding transcription factors] -1.263 -0.230
97 AT3G08700 AT3G08700 UBC12, ubiquitin-conjugating enzyme 12 -1.248 1.194
98 AT1G21440 AT1G21440 [Phosphoenolpyruvate carboxylase family protein] -1.179 -1.075
99 AT5G17800 AT5G17800 AtMYB56, myb domain protein 56, MYB56, myb domain protein 56 -1.178 -2.278