4.0:Information of module
stele pSHR 3h BL
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 7.500e-23
GO:0042221 response to chemical BP 2.339e-17
GO:0009605 response to external stimulus BP 2.422e-15
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 1.246e-23
GO:0043414 macromolecule methylation BP 1.013e-19
GO:0032259 methylation BP 2.060e-19
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
stele pSHR 3h BL		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 AT3G05730 AT3G05730 [LOCATED IN: endomembrane system] 3.970 -0.826
2 AT4G08620 AT4G08620 SULTR1;1, sulphate transporter 1;1 3.663 -0.440
3 AT1G22900 AT1G22900 [Disease resistance-responsive (dirigent-like protein) family protein] 3.193 -0.099
4 AT2G21040 AT2G21040 [Calcium-dependent lipid-binding (CaLB domain) family protein] 3.187 -0.975
5 AT2G20880 AT2G20880 AtERF53, ERF53, ERF domain 53 3.168 0.482
6 AT1G66930 AT1G66930 [Protein kinase superfamily protein] 2.989 -1.019
7 AT4G13090 AT4G13090 XTH2, xyloglucan endotransglucosylase/hydrolase 2 2.988 -1.164
8 AT2G37900 AT2G37900 [Major facilitator superfamily protein] 2.935 -0.240
9 AT4G35770 AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 2.849 0.835
10 AT3G27690 AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 2.822 -0.183
11 AT5G25250 AT5G25250 FLOT1, flotillin 1 2.653 no data
12 AT5G64110 AT5G64110 [Peroxidase superfamily protein] 2.567 0.888
13 AT3G18890 AT3G18890 AtTic62, translocon at the inner envelope membrane of chloroplasts 62, Tic62, translocon at the inner envelope membrane of chloroplasts 62 2.551 0.469
14 AT5G48430 AT5G48430 [Eukaryotic aspartyl protease family protein] 2.512 -0.177
15 AT2G17680 AT2G17680 unknown 2.484 -0.795
16 AT1G08090 AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 2.416 0.174
17 AT4G04990 AT4G04990 unknown 2.388 -0.872
18 AT1G10070 AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 2.377 -0.855
19 AT1G10550 AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 2.318 0.830
20 AT1G22890 AT1G22890 unknown 2.136 -0.617
21 AT1G72620 AT1G72620 [alpha/beta-Hydrolases superfamily protein] 2.135 no data
22 AT3G48740 AT3G48740 AtSWEET11, SWEET11 2.092 -0.070
23 AT5G23660 AT5G23660 AtSWEET12, MTN3, homolog of Medicago truncatula MTN3, SWEET12 2.086 0.330
24 AT2G14247 AT2G14247 [Expressed protein] 2.064 no data
25 AT1G79320 AT1G79320 AtMC6, metacaspase 6, AtMCP2c, metacaspase 2c, MC6, metacaspase 6, MCP2c, metacaspase 2c 2.052 0.038
26 AT2G05540 AT2G05540 [Glycine-rich protein family] 2.029 -0.688
27 AT3G63350 AT3G63350 AT-HSFA7B, HSFA7B, HEAT SHOCK TRANSCRIPTION FACTOR A7B 1.982 0.193
28 AT4G21870 AT4G21870 [HSP20-like chaperones superfamily protein] 1.968 0.769
29 AT1G64590 AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] 1.958 -1.093
30 AT3G16530 AT3G16530 [Legume lectin family protein] 1.942 0.716
31 AT2G26820 AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 1.857 0.213
32 AT5G45480 AT5G45480 unknown 1.841 0.316
33 AT1G19530 AT1G19530 unknown 1.829 0.667
34 AT3G18200 AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 1.809 -0.279
35 AT1G13110 AT1G13110 CYP71B7, cytochrome P450, family 71 subfamily B, polypeptide 7 1.796 0.703
36 AT3G01290 AT3G01290 AtHIR2, HIR2, hypersensitive induced reaction 2 1.795 0.068
37 AT1G28160 AT1G28160 [Integrase-type DNA-binding superfamily protein] 1.766 -0.208
38 AT5G44417 AT5G44417 [pseudogene] 1.751 no data
39 AT1G21400 AT1G21400 [Thiamin diphosphate-binding fold (THDP-binding) superfamily protein] 1.748 no data
40 AT5G07330 AT5G07330 unknown 1.737 0.730
41 AT4G08300 AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 1.678 -0.882
42 AT5G49360 AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 1.676 0.444
43 AT2G42060 AT2G42060 [Cysteine/Histidine-rich C1 domain family protein] 1.675 -0.984
44 AT4G37390 AT4G37390 AUR3, AUXIN UPREGULATED 3, BRU6, GH3-2, GH3.2, YDK1, YADOKARI 1 1.671 no data
45 AT5G24060 AT5G24060 [Pentatricopeptide repeat (PPR) superfamily protein] 1.645 no data
46 AT2G18050 AT2G18050 HIS1-3, histone H1-3 1.629 0.012
47 AT4G37220 AT4G37220 [Cold acclimation protein WCOR413 family] 1.621 -0.828
48 AT4G14630 AT4G14630 GLP9, germin-like protein 9 1.619 -0.722
49 AT1G28330 AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 1.619 0.492
50 AT2G22980 AT2G22980 SCPL13, serine carboxypeptidase-like 13 1.597 -1.145
51 AT2G46850 AT2G46850 [Protein kinase superfamily protein] -3.703 -1.106
52 AT3G26120 AT3G26120 terminal EAR1-like 1 -3.345 0.262
53 AT1G70680 AT1G70680 [Caleosin-related family protein] -2.846 no data
54 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -2.816 -0.291
55 AT3G50750 AT3G50750 BEH1, BES1/BZR1 homolog 1 -2.787 0.291
56 AT1G51220 AT1G51220 AtWIP5, WIP5, WIP domain protein 5 -2.748 no data
57 AT3G12900 AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -2.748 -0.288
58 AT2G04020 AT2G04020 [GDSL-like Lipase/Acylhydrolase superfamily protein] -2.503 0.190
59 AT5G22580 AT5G22580 [Stress responsive A/B Barrel Domain] -2.423 -0.298
60 AT3G19500 AT3G19500 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -2.394 0.377
61 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -2.310 no data
62 AT5G57785 AT5G57785 unknown -2.235 0.028
63 AT4G33800 AT4G33800 unknown -2.178 -0.087
64 AT2G46990 AT2G46990 IAA20, indole-3-acetic acid inducible 20 -2.117 0.059
65 AT3G62760 AT3G62760 ATGSTF13 -2.091 -0.427
66 AT4G28250 AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 -2.090 -0.294
67 AT3G19710 AT3G19710 BCAT4, branched-chain aminotransferase4 -2.074 -0.455
68 AT5G48070 AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 -2.002 -0.036
69 AT5G38020 AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -1.963 0.038
70 AT1G65860 AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 -1.957 -0.698
71 AT5G26220 AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -1.947 0.231
72 AT1G74500 AT1G74500 ATBS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, bHLH135, basic helix-loop-helix protein 135, BS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, PRE3, PACLOBUTRAZOL RESISTANCE 3, TMO7, TARGET OF MONOPTEROS 7 -1.943 0.370
73 AT3G09120 AT3G09120 unknown -1.821 no data
74 AT3G30725 AT3G30725 AtGDU6, glutamine dumper 6, GDU6, glutamine dumper 6 -1.779 no data
75 AT4G25010 AT4G25010 AtSWEET14, SWEET14 -1.746 -0.214
76 AT1G05835 AT1G05835 [PHD finger protein] -1.717 no data
77 AT3G59340 AT3G59340 unknown -1.703 -0.049
78 AT1G68825 AT1G68825 DVL5, DEVIL 5, RTFL15, ROTUNDIFOLIA like 15 -1.668 no data
79 AT5G14200 AT5G14200 ATIMD1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, IMD1, isopropylmalate dehydrogenase 1 -1.643 no data
80 AT5G10510 AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -1.641 -0.280
81 AT1G69530 AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 -1.547 0.346
82 AT3G23570 AT3G23570 [alpha/beta-Hydrolases superfamily protein] -1.545 0.118
83 AT4G08780 AT4G08780 [Peroxidase superfamily protein] -1.536 -0.928
84 AT3G54600 AT3G54600 DJ-1f, DJ1F -1.533 no data
85 AT2G31790 AT2G31790 [UDP-Glycosyltransferase superfamily protein] -1.525 0.163
86 AT1G78370 AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 -1.500 0.513
87 AT3G16300 AT3G16300 [Uncharacterised protein family (UPF0497)] -1.481 no data
88 AT5G62210 AT5G62210 [Embryo-specific protein 3, (ATS3)] -1.467 -0.682
89 AT3G60870 AT3G60870 AHL18, AT-hook motif nuclear-localized protein 18 -1.443 no data
90 AT2G17080 AT2G17080 unknown -1.404 -0.639
91 AT5G23010 AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -1.364 -0.996
92 AT4G11190 AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] -1.350 -0.792
93 AT1G51190 AT1G51190 PLT2, PLETHORA 2 -1.343 -0.742
94 AT4G30650 AT4G30650 [Low temperature and salt responsive protein family] -1.332 0.150
95 AT1G21140 AT1G21140 [Vacuolar iron transporter (VIT) family protein] -1.279 0.424
96 AT4G30180 AT4G30180 [sequence-specific DNA binding transcription factors] -1.263 no data
97 AT3G08700 AT3G08700 UBC12, ubiquitin-conjugating enzyme 12 -1.248 -1.026
98 AT1G21440 AT1G21440 [Phosphoenolpyruvate carboxylase family protein] -1.179 0.096
99 AT5G17800 AT5G17800 AtMYB56, myb domain protein 56, MYB56, myb domain protein 56 -1.178 -0.052