4.0:Information of module
stele pSHR 3h BL
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 7.500e-23
GO:0042221 response to chemical BP 2.339e-17
GO:0009605 response to external stimulus BP 2.422e-15
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 1.246e-23
GO:0043414 macromolecule methylation BP 1.013e-19
GO:0032259 methylation BP 2.060e-19
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
stele pSHR 3h BL		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 AT3G05730 AT3G05730 [LOCATED IN: endomembrane system] 3.970 -0.056
2 AT4G08620 AT4G08620 SULTR1;1, sulphate transporter 1;1 3.663 0.073
3 AT1G22900 AT1G22900 [Disease resistance-responsive (dirigent-like protein) family protein] 3.193 0.255
4 AT2G21040 AT2G21040 [Calcium-dependent lipid-binding (CaLB domain) family protein] 3.187 -0.119
5 AT2G20880 AT2G20880 AtERF53, ERF53, ERF domain 53 3.168 0.055
6 AT1G66930 AT1G66930 [Protein kinase superfamily protein] 2.989 0.003
7 AT4G13090 AT4G13090 XTH2, xyloglucan endotransglucosylase/hydrolase 2 2.988 0.183
8 AT2G37900 AT2G37900 [Major facilitator superfamily protein] 2.935 -0.158
9 AT4G35770 AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 2.849 0.178
10 AT3G27690 AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 2.822 -0.064
11 AT5G25250 AT5G25250 FLOT1, flotillin 1 2.653 no data
12 AT5G64110 AT5G64110 [Peroxidase superfamily protein] 2.567 -0.034
13 AT3G18890 AT3G18890 AtTic62, translocon at the inner envelope membrane of chloroplasts 62, Tic62, translocon at the inner envelope membrane of chloroplasts 62 2.551 -0.158
14 AT5G48430 AT5G48430 [Eukaryotic aspartyl protease family protein] 2.512 -0.003
15 AT2G17680 AT2G17680 unknown 2.484 0.123
16 AT1G08090 AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 2.416 -0.011
17 AT4G04990 AT4G04990 unknown 2.388 0.015
18 AT1G10070 AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 2.377 0.011
19 AT1G10550 AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 2.318 -0.061
20 AT1G22890 AT1G22890 unknown 2.136 -0.122
21 AT1G72620 AT1G72620 [alpha/beta-Hydrolases superfamily protein] 2.135 no data
22 AT3G48740 AT3G48740 AtSWEET11, SWEET11 2.092 -0.092
23 AT5G23660 AT5G23660 AtSWEET12, MTN3, homolog of Medicago truncatula MTN3, SWEET12 2.086 0.060
24 AT2G14247 AT2G14247 [Expressed protein] 2.064 no data
25 AT1G79320 AT1G79320 AtMC6, metacaspase 6, AtMCP2c, metacaspase 2c, MC6, metacaspase 6, MCP2c, metacaspase 2c 2.052 -0.005
26 AT2G05540 AT2G05540 [Glycine-rich protein family] 2.029 -0.139
27 AT3G63350 AT3G63350 AT-HSFA7B, HSFA7B, HEAT SHOCK TRANSCRIPTION FACTOR A7B 1.982 0.118
28 AT4G21870 AT4G21870 [HSP20-like chaperones superfamily protein] 1.968 0.028
29 AT1G64590 AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] 1.958 0.002
30 AT3G16530 AT3G16530 [Legume lectin family protein] 1.942 0.098
31 AT2G26820 AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 1.857 -0.052
32 AT5G45480 AT5G45480 unknown 1.841 -0.124
33 AT1G19530 AT1G19530 unknown 1.829 0.007
34 AT3G18200 AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 1.809 -0.277
35 AT1G13110 AT1G13110 CYP71B7, cytochrome P450, family 71 subfamily B, polypeptide 7 1.796 0.073
36 AT3G01290 AT3G01290 AtHIR2, HIR2, hypersensitive induced reaction 2 1.795 -0.156
37 AT1G28160 AT1G28160 [Integrase-type DNA-binding superfamily protein] 1.766 0.120
38 AT5G44417 AT5G44417 [pseudogene] 1.751 no data
39 AT1G21400 AT1G21400 [Thiamin diphosphate-binding fold (THDP-binding) superfamily protein] 1.748 no data
40 AT5G07330 AT5G07330 unknown 1.737 -0.125
41 AT4G08300 AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 1.678 0.089
42 AT5G49360 AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 1.676 0.333
43 AT2G42060 AT2G42060 [Cysteine/Histidine-rich C1 domain family protein] 1.675 0.233
44 AT4G37390 AT4G37390 AUR3, AUXIN UPREGULATED 3, BRU6, GH3-2, GH3.2, YDK1, YADOKARI 1 1.671 no data
45 AT5G24060 AT5G24060 [Pentatricopeptide repeat (PPR) superfamily protein] 1.645 no data
46 AT2G18050 AT2G18050 HIS1-3, histone H1-3 1.629 0.087
47 AT4G37220 AT4G37220 [Cold acclimation protein WCOR413 family] 1.621 -0.072
48 AT4G14630 AT4G14630 GLP9, germin-like protein 9 1.619 0.042
49 AT1G28330 AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 1.619 -0.015
50 AT2G22980 AT2G22980 SCPL13, serine carboxypeptidase-like 13 1.597 0.001
51 AT2G46850 AT2G46850 [Protein kinase superfamily protein] -3.703 -0.255
52 AT3G26120 AT3G26120 terminal EAR1-like 1 -3.345 0.062
53 AT1G70680 AT1G70680 [Caleosin-related family protein] -2.846 no data
54 AT5G66080 AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -2.816 0.083
55 AT3G50750 AT3G50750 BEH1, BES1/BZR1 homolog 1 -2.787 0.149
56 AT1G51220 AT1G51220 AtWIP5, WIP5, WIP domain protein 5 -2.748 no data
57 AT3G12900 AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -2.748 0.283
58 AT2G04020 AT2G04020 [GDSL-like Lipase/Acylhydrolase superfamily protein] -2.503 -0.039
59 AT5G22580 AT5G22580 [Stress responsive A/B Barrel Domain] -2.423 -0.092
60 AT3G19500 AT3G19500 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -2.394 -0.006
61 AT5G38940 AT5G38940 [RmlC-like cupins superfamily protein] -2.310 no data
62 AT5G57785 AT5G57785 unknown -2.235 0.103
63 AT4G33800 AT4G33800 unknown -2.178 -0.172
64 AT2G46990 AT2G46990 IAA20, indole-3-acetic acid inducible 20 -2.117 -0.172
65 AT3G62760 AT3G62760 ATGSTF13 -2.091 -0.087
66 AT4G28250 AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 -2.090 0.294
67 AT3G19710 AT3G19710 BCAT4, branched-chain aminotransferase4 -2.074 -0.198
68 AT5G48070 AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 -2.002 -0.063
69 AT5G38020 AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -1.963 -0.016
70 AT1G65860 AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 -1.957 0.048
71 AT5G26220 AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -1.947 0.040
72 AT1G74500 AT1G74500 ATBS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, bHLH135, basic helix-loop-helix protein 135, BS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, PRE3, PACLOBUTRAZOL RESISTANCE 3, TMO7, TARGET OF MONOPTEROS 7 -1.943 -0.245
73 AT3G09120 AT3G09120 unknown -1.821 no data
74 AT3G30725 AT3G30725 AtGDU6, glutamine dumper 6, GDU6, glutamine dumper 6 -1.779 no data
75 AT4G25010 AT4G25010 AtSWEET14, SWEET14 -1.746 -0.024
76 AT1G05835 AT1G05835 [PHD finger protein] -1.717 no data
77 AT3G59340 AT3G59340 unknown -1.703 0.049
78 AT1G68825 AT1G68825 DVL5, DEVIL 5, RTFL15, ROTUNDIFOLIA like 15 -1.668 no data
79 AT5G14200 AT5G14200 ATIMD1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, IMD1, isopropylmalate dehydrogenase 1 -1.643 no data
80 AT5G10510 AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -1.641 0.015
81 AT1G69530 AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 -1.547 -0.021
82 AT3G23570 AT3G23570 [alpha/beta-Hydrolases superfamily protein] -1.545 0.053
83 AT4G08780 AT4G08780 [Peroxidase superfamily protein] -1.536 -0.070
84 AT3G54600 AT3G54600 DJ-1f, DJ1F -1.533 no data
85 AT2G31790 AT2G31790 [UDP-Glycosyltransferase superfamily protein] -1.525 -0.025
86 AT1G78370 AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 -1.500 -0.073
87 AT3G16300 AT3G16300 [Uncharacterised protein family (UPF0497)] -1.481 no data
88 AT5G62210 AT5G62210 [Embryo-specific protein 3, (ATS3)] -1.467 -0.166
89 AT3G60870 AT3G60870 AHL18, AT-hook motif nuclear-localized protein 18 -1.443 no data
90 AT2G17080 AT2G17080 unknown -1.404 0.063
91 AT5G23010 AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -1.364 -0.134
92 AT4G11190 AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] -1.350 0.107
93 AT1G51190 AT1G51190 PLT2, PLETHORA 2 -1.343 0.004
94 AT4G30650 AT4G30650 [Low temperature and salt responsive protein family] -1.332 -0.146
95 AT1G21140 AT1G21140 [Vacuolar iron transporter (VIT) family protein] -1.279 -0.032
96 AT4G30180 AT4G30180 [sequence-specific DNA binding transcription factors] -1.263 no data
97 AT3G08700 AT3G08700 UBC12, ubiquitin-conjugating enzyme 12 -1.248 -0.068
98 AT1G21440 AT1G21440 [Phosphoenolpyruvate carboxylase family protein] -1.179 0.231
99 AT5G17800 AT5G17800 AtMYB56, myb domain protein 56, MYB56, myb domain protein 56 -1.178 0.108