4.0:Information of module
Col-0 Mock Shade
In comparison with Dark 1day ivd help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 4.044e-30
GO:0009725 response to hormone BP 1.904e-26
GO:0010033 response to organic substance BP 7.527e-23
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 7.314e-35
GO:0009628 response to abiotic stimulus BP 6.218e-26
GO:0006950 response to stress BP 8.304e-22
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 Mock Shade		 Log2 signal ratio
Dark 1day ivd
1 AT1G04180 AT1G04180 YUC9, YUCCA 9 4.467 1.818
2 ATCG00950 ATCG00950 RRN23S.1, ribosomal RNA23S 4.203 1.531
3 AT2G44910 AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 3.715 -0.976
4 AT4G31380 AT4G31380 FLP1, FPF1-like protein 1 3.570 5.026
5 AT5G36150 AT5G36150 ATPEN3, putative pentacyclic triterpene synthase 3, PEN3, putative pentacyclic triterpene synthase 3 3.245 -0.305
6 AT2G38240 AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 3.192 1.667
7 AT3G21330 AT3G21330 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 3.114 3.201
8 AT4G16780 AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 2.991 2.812
9 AT4G37770 AT4G37770 ACS8, 1-amino-cyclopropane-1-carboxylate synthase 8 2.393 2.419
10 AT3G21320 AT3G21320 unknown 2.332 2.202
11 AT5G43890 AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 2.325 1.084
12 AT4G28720 AT4G28720 YUC8, YUCCA 8 2.313 0.984
13 AT2G46970 AT2G46970 PIL1, phytochrome interacting factor 3-like 1 2.312 1.741
14 AT3G21720 AT3G21720 ICL, isocitrate lyase 2.307 -0.305
15 AT3G03830 AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 2.250 -1.677
16 AT4G32280 AT4G32280 IAA29, indole-3-acetic acid inducible 29 2.245 2.292
17 AT1G62420 AT1G62420 unknown 2.224 6.218
18 AT5G12050 AT5G12050 unknown 2.219 0.751
19 AT3G51400 AT3G51400 unknown 2.143 2.770
20 AT1G15580 AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 2.137 -3.776
21 AT3G61920 AT3G61920 unknown 2.124 -0.841
22 AT5G66580 AT5G66580 unknown 2.104 1.097
23 AT5G18050 AT5G18050 SAUR22, SMALL AUXIN UP RNA 22 2.100 1.622
24 AT4G36700 AT4G36700 [RmlC-like cupins superfamily protein] 2.079 -0.841
25 AT1G29490 AT1G29490 SAUR68, SMALL AUXIN UPREGULATED 68 2.031 0.884
26 AT5G47370 AT5G47370 HAT2 1.971 2.606
27 AT5G18010 AT5G18010 SAUR19, small auxin up RNA 19 1.959 0.299
28 AT5G57640 AT5G57640 [GCK domain-containing protein] 1.918 3.879
29 AT3G15170 AT3G15170 ANAC054, Arabidopsis NAC domain containing protein 54, ATNAC1, CUC1, CUP-SHAPED COTYLEDON1 1.892 0.603
30 AT2G42870 AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 1.865 1.276
31 ATCG00020 ATCG00020 PSBA, photosystem II reaction center protein A 1.856 1.610
32 ATCG00350 ATCG00350 PSAA 1.828 1.292
33 AT4G34770 AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 1.810 0.291
34 ATCG00490 ATCG00490 RBCL 1.745 0.773
35 AT1G02620 AT1G02620 [Ras-related small GTP-binding family protein] 1.725 5.287
36 AT4G13260 AT4G13260 AtYUC2, YUC2, YUCCA2 1.702 -0.329
37 AT3G50800 AT3G50800 unknown 1.685 -2.045
38 AT1G11735 AT1G11735 MIR171B, microRNA171B 1.673 0.491
39 AT1G17345 AT1G17345 SAUR77, SMALL AUXIN UPREGULATED RNA 77 1.605 -0.305
40 AT3G03820 AT3G03820 SAUR29, SMALL AUXIN UP RNA 29 1.592 -1.174
41 ATCG00040 ATCG00040 MATK, maturase K 1.547 -1.402
42 AT3G23030 AT3G23030 IAA2, indole-3-acetic acid inducible 2 1.543 1.141
43 AT1G29450 AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 1.519 -1.466
44 AT5G46240 AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 1.519 -0.610
45 AT2G18010 AT2G18010 SAUR10, SMALL AUXIN UPREGULATED RNA 10 1.513 -1.254
46 AT1G50040 AT1G50040 unknown 1.505 3.434
47 AT3G55500 AT3G55500 ATEXP16, ATEXPA16, expansin A16, ATHEXP ALPHA 1.7, EXP16, EXPANSIN 16, EXPA16, expansin A16 1.482 2.534
48 AT2G01021 AT2G01021 unknown 1.477 1.102
49 AT3G03850 AT3G03850 SAUR26, SMALL AUXIN UP RNA 26 1.474 -2.403
50 AT5G64750 AT5G64750 ABR1, ABA REPRESSOR1 1.474 1.017
51 AT5G65800 AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 1.449 4.468
52 AT5G18060 AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 1.448 0.397
53 AT5G02760 AT5G02760 APD7, Arabidopsis Pp2c clade D 7 1.432 -2.033
54 AT1G22810 AT1G22810 [Integrase-type DNA-binding superfamily protein] 1.420 0.604
55 AT2G27690 AT2G27690 CYP94C1, cytochrome P450, family 94, subfamily C, polypeptide 1 1.414 0.743
56 AT4G17460 AT4G17460 HAT1, JAB, JAIBA 1.412 1.401
57 AT5G39860 AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 1.399 -0.709
58 AT2G14245 AT2G14245 [copia-like retrotransposon family, has a 2.2e-28 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 1.398 -1.797
59 AT3G41768 AT3G41768 [18SrRNA] 1.387 0.988
60 ATMG00020 ATMG00020 RRN26, ribosomal RNA26S 1.381 1.156
61 AT3G15540 AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 1.375 -0.476
62 ATCG00280 ATCG00280 PSBC, photosystem II reaction center protein C 1.364 1.176
63 AT1G10550 AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 1.347 -1.201
64 AT3G60390 AT3G60390 HAT3, homeobox-leucine zipper protein 3 1.345 -0.925
65 AT4G18170 AT4G18170 ATWRKY28, WRKY28, WRKY DNA-binding protein 28 1.339 1.621
66 ATCG00340 ATCG00340 PSAB 1.337 1.285
67 AT2G26710 AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 1.337 0.198
68 AT1G72620 AT1G72620 [alpha/beta-Hydrolases superfamily protein] 1.331 -5.223
69 AT5G18030 AT5G18030 [SAUR-like auxin-responsive protein family ] 1.321 -1.213
70 AT1G73550 AT1G73550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 1.313 -0.305
71 AT5G62280 AT5G62280 unknown 1.309 0.672
72 AT2G01300 AT2G01300 unknown 1.296 0.688
73 AT2G41240 AT2G41240 BHLH100, basic helix-loop-helix protein 100 1.293 -4.412
74 ATCG00330 ATCG00330 RPS14, chloroplast ribosomal protein S14 1.283 1.285
75 AT1G58983 AT1G58983 [Ribosomal protein S5 family protein] -6.350 -0.305
76 AT4G34410 AT4G34410 RRTF1, redox responsive transcription factor 1 -3.892 2.554
77 AT2G15020 AT2G15020 unknown -3.337 -10.144
78 AT1G05880 AT1G05880 ARI12, ARIADNE 12, ATARI12, ARABIDOPSIS ARIADNE 12 -3.175 -5.050
79 AT3G61840 AT3G61840 unknown -2.946 -1.277
80 AT4G15248 AT4G15248 BBX30, B-box domain protein 30 -2.792 -4.613
81 AT3G21890 AT3G21890 BBX31, B-box domain protein 31 -2.776 -5.170
82 AT3G21150 AT3G21150 B-box 32 -2.694 -5.440
83 AT2G27420 AT2G27420 [Cysteine proteinases superfamily protein] -2.607 -5.307
84 AT4G13395 AT4G13395 DVL10, DEVIL 10, RTFL12, ROTUNDIFOLIA like 12 -2.539 -0.715
85 AT4G25480 AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A -2.492 1.027
86 AT5G45630 AT5G45630 unknown -2.492 0.545
87 AT3G22231 AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -2.482 -1.778
88 AT2G37720 AT2G37720 TBL15, TRICHOME BIREFRINGENCE-LIKE 15 -2.445 -3.981
89 AT4G34550 AT4G34550 unknown -2.316 -0.305
90 AT4G23515 AT4G23515 [Toll-Interleukin-Resistance (TIR) domain family protein] -2.255 1.718
91 AT4G26950 AT4G26950 unknown -2.216 -4.827
92 AT3G27250 AT3G27250 unknown -2.189 0.936
93 AT3G44450 AT3G44450 unknown -2.134 -5.655
94 AT1G72910 AT1G72910 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -2.113 -2.867
95 AT2G36750 AT2G36750 UGT73C1, UDP-glucosyl transferase 73C1 -2.078 -0.841
96 AT5G44420 AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A -2.076 -0.694
97 AT4G04990 AT4G04990 unknown -2.031 -0.305
98 AT2G29090 AT2G29090 CYP707A2, cytochrome P450, family 707, subfamily A, polypeptide 2 -2.015 4.127
99 AT1G26390 AT1G26390 [FAD-binding Berberine family protein] -1.982 -1.297
100 AT3G21760 AT3G21760 HYR1, HYPOSTATIN RESISTANCE 1 -1.968 -1.537
101 AT1G09240 AT1G09240 ATNAS3, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, NAS3, nicotianamine synthase 3 -1.934 -1.119
102 AT1G70260 AT1G70260 UMAMIT36, Usually multiple acids move in and out Transporters 36 -1.928 -3.804
103 AT4G27657 AT4G27657 unknown -1.899 -1.422
104 AT5G50800 AT5G50800 AtSWEET13, SWEET13 -1.872 0.049
105 AT5G49740 AT5G49740 ATFRO7, FERRIC REDUCTION OXIDASE 7, FRO7, ferric reduction oxidase 7 -1.854 -0.503
106 AT3G19270 AT3G19270 CYP707A4, cytochrome P450, family 707, subfamily A, polypeptide 4 -1.852 2.443
107 AT1G72920 AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -1.844 -4.014
108 AT5G42530 AT5G42530 unknown -1.837 -0.693
109 AT4G27360 AT4G27360 [Dynein light chain type 1 family protein] -1.809 -4.992
110 AT2G46790 AT2G46790 APRR9, Arabidopsis pseudo-response regulator 9, PRR9, pseudo-response regulator 9, TL1, TOC1-LIKE PROTEIN 1 -1.805 0.300
111 AT3G09450 AT3G09450 unknown -1.787 -6.177
112 AT5G46830 AT5G46830 ATNIG1, NACL-INDUCIBLE GENE 1, NIG1, NACL-inducible gene 1 -1.777 -1.534
113 AT2G36800 AT2G36800 DOGT1, don-glucosyltransferase 1, UGT73C5, UDP-GLUCOSYL TRANSFERASE 73C5 -1.757 -1.660
114 AT3G49160 AT3G49160 [pyruvate kinase family protein] -1.756 0.402
115 AT4G12320 AT4G12320 CYP706A6, cytochrome P450, family 706, subfamily A, polypeptide 6 -1.743 -0.603
116 AT3G15310 AT3G15310 unknown -1.733 -6.473
117 AT2G31230 AT2G31230 ATERF15, ethylene-responsive element binding factor 15, ERF15, ethylene-responsive element binding factor 15 -1.728 -1.784
118 AT5G24155 AT5G24155 [FAD/NAD(P)-binding oxidoreductase family protein] -1.710 -3.468
119 AT4G29110 AT4G29110 unknown -1.678 -1.751
120 AT1G55960 AT1G55960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.678 -2.761
121 AT4G33040 AT4G33040 [Thioredoxin superfamily protein] -1.671 -0.530
122 AT2G21320 AT2G21320 BBX18, B-box domain protein 18 -1.656 -3.122
123 AT4G16880 AT4G16880 [Leucine-rich repeat (LRR) family protein] -1.656 -6.257
124 AT1G76530 AT1G76530 [Auxin efflux carrier family protein] -1.652 -5.029
125 AT1G66540 AT1G66540 [Cytochrome P450 superfamily protein] -1.645 -3.535
126 AT5G45850 AT5G45850 unknown -1.608 -1.534
127 AT3G23170 AT3G23170 unknown -1.564 1.914
128 AT3G04140 AT3G04140 [Ankyrin repeat family protein] -1.562 -1.748
129 AT5G17350 AT5G17350 unknown -1.557 -3.664
130 AT5G66740 AT5G66740 unknown -1.556 -5.966
131 AT4G26530 AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 -1.544 -3.251
132 AT3G52740 AT3G52740 unknown -1.543 -2.787
133 AT5G54130 AT5G54130 [Calcium-binding endonuclease/exonuclease/phosphatase family] -1.538 -3.241
134 AT5G54470 AT5G54470 BBX29, B-box domain protein 29 -1.510 -0.778
135 AT1G26410 AT1G26410 [FAD-binding Berberine family protein] -1.501 -2.607
136 AT3G47430 AT3G47430 PEX11B, peroxin 11B -1.496 -1.063
137 AT1G78995 AT1G78995 unknown -1.468 -2.086
138 AT5G17300 AT5G17300 RVE1, REVEILLE 1 -1.456 0.029
139 AT1G48100 AT1G48100 [Pectin lyase-like superfamily protein] -1.453 -1.456
140 AT1G76955 AT1G76955 [Expressed protein] -1.440 0.588
141 AT4G11280 AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 -1.439 -2.038
142 AT4G27652 AT4G27652 unknown -1.423 -0.896
143 AT5G24660 AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -1.422 -3.816
144 AT1G18330 AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 -1.405 3.578
145 AT5G59820 AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 -1.402 -1.445
146 AT2G29170 AT2G29170 [NAD(P)-binding Rossmann-fold superfamily protein] -1.397 -4.008
147 AT1G24147 AT1G24147 unknown -1.387 -2.874