4.0:Information of module
Col-0 Mock Shade
In comparison with Dark 6h ivd help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 4.044e-30
GO:0009725 response to hormone BP 1.904e-26
GO:0010033 response to organic substance BP 7.527e-23
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 7.314e-35
GO:0009628 response to abiotic stimulus BP 6.218e-26
GO:0006950 response to stress BP 8.304e-22
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 Mock Shade		 Log2 signal ratio
Dark 6h ivd
1 AT1G04180 AT1G04180 YUC9, YUCCA 9 4.467 2.880
2 ATCG00950 ATCG00950 RRN23S.1, ribosomal RNA23S 4.203 0.307
3 AT2G44910 AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 3.715 0.884
4 AT4G31380 AT4G31380 FLP1, FPF1-like protein 1 3.570 3.938
5 AT5G36150 AT5G36150 ATPEN3, putative pentacyclic triterpene synthase 3, PEN3, putative pentacyclic triterpene synthase 3 3.245 -0.158
6 AT2G38240 AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 3.192 0.505
7 AT3G21330 AT3G21330 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 3.114 4.536
8 AT4G16780 AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 2.991 2.448
9 AT4G37770 AT4G37770 ACS8, 1-amino-cyclopropane-1-carboxylate synthase 8 2.393 5.288
10 AT3G21320 AT3G21320 unknown 2.332 3.003
11 AT5G43890 AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 2.325 1.868
12 AT4G28720 AT4G28720 YUC8, YUCCA 8 2.313 1.027
13 AT2G46970 AT2G46970 PIL1, phytochrome interacting factor 3-like 1 2.312 1.388
14 AT3G21720 AT3G21720 ICL, isocitrate lyase 2.307 -0.158
15 AT3G03830 AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 2.250 -0.511
16 AT4G32280 AT4G32280 IAA29, indole-3-acetic acid inducible 29 2.245 2.600
17 AT1G62420 AT1G62420 unknown 2.224 7.273
18 AT5G12050 AT5G12050 unknown 2.219 1.293
19 AT3G51400 AT3G51400 unknown 2.143 3.692
20 AT1G15580 AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 2.137 -1.068
21 AT3G61920 AT3G61920 unknown 2.124 -0.692
22 AT5G66580 AT5G66580 unknown 2.104 1.658
23 AT5G18050 AT5G18050 SAUR22, SMALL AUXIN UP RNA 22 2.100 2.419
24 AT4G36700 AT4G36700 [RmlC-like cupins superfamily protein] 2.079 -0.692
25 AT1G29490 AT1G29490 SAUR68, SMALL AUXIN UPREGULATED 68 2.031 2.550
26 AT5G47370 AT5G47370 HAT2 1.971 2.199
27 AT5G18010 AT5G18010 SAUR19, small auxin up RNA 19 1.959 0.925
28 AT5G57640 AT5G57640 [GCK domain-containing protein] 1.918 3.048
29 AT3G15170 AT3G15170 ANAC054, Arabidopsis NAC domain containing protein 54, ATNAC1, CUC1, CUP-SHAPED COTYLEDON1 1.892 -0.158
30 AT2G42870 AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 1.865 3.179
31 ATCG00020 ATCG00020 PSBA, photosystem II reaction center protein A 1.856 0.390
32 ATCG00350 ATCG00350 PSAA 1.828 0.059
33 AT4G34770 AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 1.810 0.209
34 ATCG00490 ATCG00490 RBCL 1.745 0.084
35 AT1G02620 AT1G02620 [Ras-related small GTP-binding family protein] 1.725 5.273
36 AT4G13260 AT4G13260 AtYUC2, YUC2, YUCCA2 1.702 0.050
37 AT3G50800 AT3G50800 unknown 1.685 1.646
38 AT1G11735 AT1G11735 MIR171B, microRNA171B 1.673 -1.195
39 AT1G17345 AT1G17345 SAUR77, SMALL AUXIN UPREGULATED RNA 77 1.605 0.369
40 AT3G03820 AT3G03820 SAUR29, SMALL AUXIN UP RNA 29 1.592 -0.621
41 ATCG00040 ATCG00040 MATK, maturase K 1.547 -1.626
42 AT3G23030 AT3G23030 IAA2, indole-3-acetic acid inducible 2 1.543 0.333
43 AT1G29450 AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 1.519 -0.867
44 AT5G46240 AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 1.519 -0.214
45 AT2G18010 AT2G18010 SAUR10, SMALL AUXIN UPREGULATED RNA 10 1.513 0.855
46 AT1G50040 AT1G50040 unknown 1.505 2.363
47 AT3G55500 AT3G55500 ATEXP16, ATEXPA16, expansin A16, ATHEXP ALPHA 1.7, EXP16, EXPANSIN 16, EXPA16, expansin A16 1.482 2.291
48 AT2G01021 AT2G01021 unknown 1.477 0.493
49 AT3G03850 AT3G03850 SAUR26, SMALL AUXIN UP RNA 26 1.474 -0.956
50 AT5G64750 AT5G64750 ABR1, ABA REPRESSOR1 1.474 3.448
51 AT5G65800 AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 1.449 3.287
52 AT5G18060 AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 1.448 1.325
53 AT5G02760 AT5G02760 APD7, Arabidopsis Pp2c clade D 7 1.432 -1.105
54 AT1G22810 AT1G22810 [Integrase-type DNA-binding superfamily protein] 1.420 -0.158
55 AT2G27690 AT2G27690 CYP94C1, cytochrome P450, family 94, subfamily C, polypeptide 1 1.414 1.047
56 AT4G17460 AT4G17460 HAT1, JAB, JAIBA 1.412 1.283
57 AT5G39860 AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 1.399 0.292
58 AT2G14245 AT2G14245 [copia-like retrotransposon family, has a 2.2e-28 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 1.398 0.210
59 AT3G41768 AT3G41768 [18SrRNA] 1.387 0.280
60 ATMG00020 ATMG00020 RRN26, ribosomal RNA26S 1.381 0.204
61 AT3G15540 AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 1.375 1.230
62 ATCG00280 ATCG00280 PSBC, photosystem II reaction center protein C 1.364 0.220
63 AT1G10550 AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 1.347 -1.427
64 AT3G60390 AT3G60390 HAT3, homeobox-leucine zipper protein 3 1.345 0.970
65 AT4G18170 AT4G18170 ATWRKY28, WRKY28, WRKY DNA-binding protein 28 1.339 2.376
66 ATCG00340 ATCG00340 PSAB 1.337 0.116
67 AT2G26710 AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 1.337 0.824
68 AT1G72620 AT1G72620 [alpha/beta-Hydrolases superfamily protein] 1.331 -2.633
69 AT5G18030 AT5G18030 [SAUR-like auxin-responsive protein family ] 1.321 -0.003
70 AT1G73550 AT1G73550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 1.313 -0.158
71 AT5G62280 AT5G62280 unknown 1.309 1.610
72 AT2G01300 AT2G01300 unknown 1.296 0.154
73 AT2G41240 AT2G41240 BHLH100, basic helix-loop-helix protein 100 1.293 -1.908
74 ATCG00330 ATCG00330 RPS14, chloroplast ribosomal protein S14 1.283 0.096
75 AT1G58983 AT1G58983 [Ribosomal protein S5 family protein] -6.350 -0.158
76 AT4G34410 AT4G34410 RRTF1, redox responsive transcription factor 1 -3.892 2.586
77 AT2G15020 AT2G15020 unknown -3.337 -7.132
78 AT1G05880 AT1G05880 ARI12, ARIADNE 12, ATARI12, ARABIDOPSIS ARIADNE 12 -3.175 -1.027
79 AT3G61840 AT3G61840 unknown -2.946 -1.125
80 AT4G15248 AT4G15248 BBX30, B-box domain protein 30 -2.792 -5.924
81 AT3G21890 AT3G21890 BBX31, B-box domain protein 31 -2.776 -5.541
82 AT3G21150 AT3G21150 B-box 32 -2.694 -3.125
83 AT2G27420 AT2G27420 [Cysteine proteinases superfamily protein] -2.607 -5.149
84 AT4G13395 AT4G13395 DVL10, DEVIL 10, RTFL12, ROTUNDIFOLIA like 12 -2.539 3.062
85 AT4G25480 AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A -2.492 6.430
86 AT5G45630 AT5G45630 unknown -2.492 2.430
87 AT3G22231 AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -2.482 -0.184
88 AT2G37720 AT2G37720 TBL15, TRICHOME BIREFRINGENCE-LIKE 15 -2.445 -3.827
89 AT4G34550 AT4G34550 unknown -2.316 -0.158
90 AT4G23515 AT4G23515 [Toll-Interleukin-Resistance (TIR) domain family protein] -2.255 0.369
91 AT4G26950 AT4G26950 unknown -2.216 -4.671
92 AT3G27250 AT3G27250 unknown -2.189 -0.825
93 AT3G44450 AT3G44450 unknown -2.134 -3.865
94 AT1G72910 AT1G72910 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -2.113 0.059
95 AT2G36750 AT2G36750 UGT73C1, UDP-glucosyl transferase 73C1 -2.078 -0.692
96 AT5G44420 AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A -2.076 -0.792
97 AT4G04990 AT4G04990 unknown -2.031 -0.158
98 AT2G29090 AT2G29090 CYP707A2, cytochrome P450, family 707, subfamily A, polypeptide 2 -2.015 0.592
99 AT1G26390 AT1G26390 [FAD-binding Berberine family protein] -1.982 1.041
100 AT3G21760 AT3G21760 HYR1, HYPOSTATIN RESISTANCE 1 -1.968 -1.847
101 AT1G09240 AT1G09240 ATNAS3, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, NAS3, nicotianamine synthase 3 -1.934 0.407
102 AT1G70260 AT1G70260 UMAMIT36, Usually multiple acids move in and out Transporters 36 -1.928 -3.648
103 AT4G27657 AT4G27657 unknown -1.899 -2.030
104 AT5G50800 AT5G50800 AtSWEET13, SWEET13 -1.872 -0.831
105 AT5G49740 AT5G49740 ATFRO7, FERRIC REDUCTION OXIDASE 7, FRO7, ferric reduction oxidase 7 -1.854 -0.818
106 AT3G19270 AT3G19270 CYP707A4, cytochrome P450, family 707, subfamily A, polypeptide 4 -1.852 1.220
107 AT1G72920 AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -1.844 1.095
108 AT5G42530 AT5G42530 unknown -1.837 -0.267
109 AT4G27360 AT4G27360 [Dynein light chain type 1 family protein] -1.809 -4.837
110 AT2G46790 AT2G46790 APRR9, Arabidopsis pseudo-response regulator 9, PRR9, pseudo-response regulator 9, TL1, TOC1-LIKE PROTEIN 1 -1.805 5.266
111 AT3G09450 AT3G09450 unknown -1.787 -8.766
112 AT5G46830 AT5G46830 ATNIG1, NACL-INDUCIBLE GENE 1, NIG1, NACL-inducible gene 1 -1.777 -1.382
113 AT2G36800 AT2G36800 DOGT1, don-glucosyltransferase 1, UGT73C5, UDP-GLUCOSYL TRANSFERASE 73C5 -1.757 -1.181
114 AT3G49160 AT3G49160 [pyruvate kinase family protein] -1.756 0.309
115 AT4G12320 AT4G12320 CYP706A6, cytochrome P450, family 706, subfamily A, polypeptide 6 -1.743 -0.879
116 AT3G15310 AT3G15310 unknown -1.733 -8.343
117 AT2G31230 AT2G31230 ATERF15, ethylene-responsive element binding factor 15, ERF15, ethylene-responsive element binding factor 15 -1.728 -1.322
118 AT5G24155 AT5G24155 [FAD/NAD(P)-binding oxidoreductase family protein] -1.710 -3.840
119 AT4G29110 AT4G29110 unknown -1.678 0.809
120 AT1G55960 AT1G55960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.678 -3.349
121 AT4G33040 AT4G33040 [Thioredoxin superfamily protein] -1.671 -1.771
122 AT2G21320 AT2G21320 BBX18, B-box domain protein 18 -1.656 -4.112
123 AT4G16880 AT4G16880 [Leucine-rich repeat (LRR) family protein] -1.656 -1.009
124 AT1G76530 AT1G76530 [Auxin efflux carrier family protein] -1.652 -4.873
125 AT1G66540 AT1G66540 [Cytochrome P450 superfamily protein] -1.645 -2.430
126 AT5G45850 AT5G45850 unknown -1.608 -1.382
127 AT3G23170 AT3G23170 unknown -1.564 0.924
128 AT3G04140 AT3G04140 [Ankyrin repeat family protein] -1.562 -2.451
129 AT5G17350 AT5G17350 unknown -1.557 -1.536
130 AT5G66740 AT5G66740 unknown -1.556 -5.282
131 AT4G26530 AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 -1.544 0.589
132 AT3G52740 AT3G52740 unknown -1.543 -2.049
133 AT5G54130 AT5G54130 [Calcium-binding endonuclease/exonuclease/phosphatase family] -1.538 -4.292
134 AT5G54470 AT5G54470 BBX29, B-box domain protein 29 -1.510 1.456
135 AT1G26410 AT1G26410 [FAD-binding Berberine family protein] -1.501 1.483
136 AT3G47430 AT3G47430 PEX11B, peroxin 11B -1.496 -3.123
137 AT1G78995 AT1G78995 unknown -1.468 -2.409
138 AT5G17300 AT5G17300 RVE1, REVEILLE 1 -1.456 -2.608
139 AT1G48100 AT1G48100 [Pectin lyase-like superfamily protein] -1.453 -1.529
140 AT1G76955 AT1G76955 [Expressed protein] -1.440 0.551
141 AT4G11280 AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 -1.439 0.327
142 AT4G27652 AT4G27652 unknown -1.423 -0.478
143 AT5G24660 AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -1.422 -3.210
144 AT1G18330 AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 -1.405 3.396
145 AT5G59820 AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 -1.402 1.325
146 AT2G29170 AT2G29170 [NAD(P)-binding Rossmann-fold superfamily protein] -1.397 -2.943
147 AT1G24147 AT1G24147 unknown -1.387 0.202