4.0:Information of module
Col-0 Mock Shade
In comparison with Col-0 DEX Shade help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 4.044e-30
GO:0009725 response to hormone BP 1.904e-26
GO:0010033 response to organic substance BP 7.527e-23
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 7.314e-35
GO:0009628 response to abiotic stimulus BP 6.218e-26
GO:0006950 response to stress BP 8.304e-22
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 Mock Shade		 Log2 signal ratio
Col-0 DEX Shade
1 AT1G04180 AT1G04180 YUC9, YUCCA 9 4.467 4.447
2 ATCG00950 ATCG00950 RRN23S.1, ribosomal RNA23S 4.203 2.529
3 AT2G44910 AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 3.715 3.537
4 AT4G31380 AT4G31380 FLP1, FPF1-like protein 1 3.570 4.955
5 AT5G36150 AT5G36150 ATPEN3, putative pentacyclic triterpene synthase 3, PEN3, putative pentacyclic triterpene synthase 3 3.245 0.112
6 AT2G38240 AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 3.192 0.541
7 AT3G21330 AT3G21330 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 3.114 3.429
8 AT4G16780 AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 2.991 2.735
9 AT4G37770 AT4G37770 ACS8, 1-amino-cyclopropane-1-carboxylate synthase 8 2.393 2.321
10 AT3G21320 AT3G21320 unknown 2.332 2.364
11 AT5G43890 AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 2.325 2.042
12 AT4G28720 AT4G28720 YUC8, YUCCA 8 2.313 2.090
13 AT2G46970 AT2G46970 PIL1, phytochrome interacting factor 3-like 1 2.312 2.154
14 AT3G21720 AT3G21720 ICL, isocitrate lyase 2.307 -0.818
15 AT3G03830 AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 2.250 2.710
16 AT4G32280 AT4G32280 IAA29, indole-3-acetic acid inducible 29 2.245 3.028
17 AT1G62420 AT1G62420 unknown 2.224 -0.591
18 AT5G12050 AT5G12050 unknown 2.219 2.329
19 AT3G51400 AT3G51400 unknown 2.143 1.455
20 AT1G15580 AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 2.137 1.697
21 AT3G61920 AT3G61920 unknown 2.124 -0.747
22 AT5G66580 AT5G66580 unknown 2.104 1.755
23 AT5G18050 AT5G18050 SAUR22, SMALL AUXIN UP RNA 22 2.100 2.460
24 AT4G36700 AT4G36700 [RmlC-like cupins superfamily protein] 2.079 -0.496
25 AT1G29490 AT1G29490 SAUR68, SMALL AUXIN UPREGULATED 68 2.031 2.100
26 AT5G47370 AT5G47370 HAT2 1.971 1.986
27 AT5G18010 AT5G18010 SAUR19, small auxin up RNA 19 1.959 2.400
28 AT5G57640 AT5G57640 [GCK domain-containing protein] 1.918 1.175
29 AT3G15170 AT3G15170 ANAC054, Arabidopsis NAC domain containing protein 54, ATNAC1, CUC1, CUP-SHAPED COTYLEDON1 1.892 0.041
30 AT2G42870 AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 1.865 2.943
31 ATCG00020 ATCG00020 PSBA, photosystem II reaction center protein A 1.856 1.112
32 ATCG00350 ATCG00350 PSAA 1.828 2.098
33 AT4G34770 AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 1.810 2.083
34 ATCG00490 ATCG00490 RBCL 1.745 1.032
35 AT1G02620 AT1G02620 [Ras-related small GTP-binding family protein] 1.725 2.116
36 AT4G13260 AT4G13260 AtYUC2, YUC2, YUCCA2 1.702 1.269
37 AT3G50800 AT3G50800 unknown 1.685 2.490
38 AT1G11735 AT1G11735 MIR171B, microRNA171B 1.673 1.763
39 AT1G17345 AT1G17345 SAUR77, SMALL AUXIN UPREGULATED RNA 77 1.605 1.303
40 AT3G03820 AT3G03820 SAUR29, SMALL AUXIN UP RNA 29 1.592 1.511
41 ATCG00040 ATCG00040 MATK, maturase K 1.547 1.745
42 AT3G23030 AT3G23030 IAA2, indole-3-acetic acid inducible 2 1.543 1.778
43 AT1G29450 AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 1.519 1.542
44 AT5G46240 AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 1.519 1.921
45 AT2G18010 AT2G18010 SAUR10, SMALL AUXIN UPREGULATED RNA 10 1.513 1.961
46 AT1G50040 AT1G50040 unknown 1.505 1.197
47 AT3G55500 AT3G55500 ATEXP16, ATEXPA16, expansin A16, ATHEXP ALPHA 1.7, EXP16, EXPANSIN 16, EXPA16, expansin A16 1.482 0.702
48 AT2G01021 AT2G01021 unknown 1.477 0.560
49 AT3G03850 AT3G03850 SAUR26, SMALL AUXIN UP RNA 26 1.474 1.719
50 AT5G64750 AT5G64750 ABR1, ABA REPRESSOR1 1.474 1.412
51 AT5G65800 AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 1.449 2.596
52 AT5G18060 AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 1.448 1.864
53 AT5G02760 AT5G02760 APD7, Arabidopsis Pp2c clade D 7 1.432 1.686
54 AT1G22810 AT1G22810 [Integrase-type DNA-binding superfamily protein] 1.420 -0.231
55 AT2G27690 AT2G27690 CYP94C1, cytochrome P450, family 94, subfamily C, polypeptide 1 1.414 1.539
56 AT4G17460 AT4G17460 HAT1, JAB, JAIBA 1.412 1.734
57 AT5G39860 AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 1.399 1.983
58 AT2G14245 AT2G14245 [copia-like retrotransposon family, has a 2.2e-28 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 1.398 -1.419
59 AT3G41768 AT3G41768 [18SrRNA] 1.387 0.476
60 ATMG00020 ATMG00020 RRN26, ribosomal RNA26S 1.381 0.615
61 AT3G15540 AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 1.375 1.424
62 ATCG00280 ATCG00280 PSBC, photosystem II reaction center protein C 1.364 1.532
63 AT1G10550 AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 1.347 0.891
64 AT3G60390 AT3G60390 HAT3, homeobox-leucine zipper protein 3 1.345 1.334
65 AT4G18170 AT4G18170 ATWRKY28, WRKY28, WRKY DNA-binding protein 28 1.339 0.845
66 ATCG00340 ATCG00340 PSAB 1.337 1.862
67 AT2G26710 AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 1.337 1.495
68 AT1G72620 AT1G72620 [alpha/beta-Hydrolases superfamily protein] 1.331 1.279
69 AT5G18030 AT5G18030 [SAUR-like auxin-responsive protein family ] 1.321 1.040
70 AT1G73550 AT1G73550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 1.313 0.436
71 AT5G62280 AT5G62280 unknown 1.309 2.003
72 AT2G01300 AT2G01300 unknown 1.296 1.167
73 AT2G41240 AT2G41240 BHLH100, basic helix-loop-helix protein 100 1.293 -0.888
74 ATCG00330 ATCG00330 RPS14, chloroplast ribosomal protein S14 1.283 1.255
75 AT1G58983 AT1G58983 [Ribosomal protein S5 family protein] -6.350 0.217
76 AT4G34410 AT4G34410 RRTF1, redox responsive transcription factor 1 -3.892 1.096
77 AT2G15020 AT2G15020 unknown -3.337 -4.010
78 AT1G05880 AT1G05880 ARI12, ARIADNE 12, ATARI12, ARABIDOPSIS ARIADNE 12 -3.175 2.283
79 AT3G61840 AT3G61840 unknown -2.946 -0.445
80 AT4G15248 AT4G15248 BBX30, B-box domain protein 30 -2.792 -5.733
81 AT3G21890 AT3G21890 BBX31, B-box domain protein 31 -2.776 -3.015
82 AT3G21150 AT3G21150 B-box 32 -2.694 -3.503
83 AT2G27420 AT2G27420 [Cysteine proteinases superfamily protein] -2.607 -3.232
84 AT4G13395 AT4G13395 DVL10, DEVIL 10, RTFL12, ROTUNDIFOLIA like 12 -2.539 0.348
85 AT4G25480 AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A -2.492 -1.069
86 AT5G45630 AT5G45630 unknown -2.492 0.784
87 AT3G22231 AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -2.482 -1.814
88 AT2G37720 AT2G37720 TBL15, TRICHOME BIREFRINGENCE-LIKE 15 -2.445 -1.288
89 AT4G34550 AT4G34550 unknown -2.316 -4.555
90 AT4G23515 AT4G23515 [Toll-Interleukin-Resistance (TIR) domain family protein] -2.255 1.183
91 AT4G26950 AT4G26950 unknown -2.216 -1.545
92 AT3G27250 AT3G27250 unknown -2.189 -1.052
93 AT3G44450 AT3G44450 unknown -2.134 -2.720
94 AT1G72910 AT1G72910 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -2.113 -0.905
95 AT2G36750 AT2G36750 UGT73C1, UDP-glucosyl transferase 73C1 -2.078 -3.345
96 AT5G44420 AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A -2.076 0.279
97 AT4G04990 AT4G04990 unknown -2.031 1.153
98 AT2G29090 AT2G29090 CYP707A2, cytochrome P450, family 707, subfamily A, polypeptide 2 -2.015 -2.515
99 AT1G26390 AT1G26390 [FAD-binding Berberine family protein] -1.982 1.237
100 AT3G21760 AT3G21760 HYR1, HYPOSTATIN RESISTANCE 1 -1.968 -0.886
101 AT1G09240 AT1G09240 ATNAS3, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, NAS3, nicotianamine synthase 3 -1.934 -1.485
102 AT1G70260 AT1G70260 UMAMIT36, Usually multiple acids move in and out Transporters 36 -1.928 -0.097
103 AT4G27657 AT4G27657 unknown -1.899 -1.015
104 AT5G50800 AT5G50800 AtSWEET13, SWEET13 -1.872 -0.818
105 AT5G49740 AT5G49740 ATFRO7, FERRIC REDUCTION OXIDASE 7, FRO7, ferric reduction oxidase 7 -1.854 -1.116
106 AT3G19270 AT3G19270 CYP707A4, cytochrome P450, family 707, subfamily A, polypeptide 4 -1.852 -1.010
107 AT1G72920 AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -1.844 -1.132
108 AT5G42530 AT5G42530 unknown -1.837 0.094
109 AT4G27360 AT4G27360 [Dynein light chain type 1 family protein] -1.809 -2.535
110 AT2G46790 AT2G46790 APRR9, Arabidopsis pseudo-response regulator 9, PRR9, pseudo-response regulator 9, TL1, TOC1-LIKE PROTEIN 1 -1.805 -1.437
111 AT3G09450 AT3G09450 unknown -1.787 -2.936
112 AT5G46830 AT5G46830 ATNIG1, NACL-INDUCIBLE GENE 1, NIG1, NACL-inducible gene 1 -1.777 -2.117
113 AT2G36800 AT2G36800 DOGT1, don-glucosyltransferase 1, UGT73C5, UDP-GLUCOSYL TRANSFERASE 73C5 -1.757 -1.603
114 AT3G49160 AT3G49160 [pyruvate kinase family protein] -1.756 0.582
115 AT4G12320 AT4G12320 CYP706A6, cytochrome P450, family 706, subfamily A, polypeptide 6 -1.743 -1.861
116 AT3G15310 AT3G15310 unknown -1.733 -2.681
117 AT2G31230 AT2G31230 ATERF15, ethylene-responsive element binding factor 15, ERF15, ethylene-responsive element binding factor 15 -1.728 -1.027
118 AT5G24155 AT5G24155 [FAD/NAD(P)-binding oxidoreductase family protein] -1.710 -1.840
119 AT4G29110 AT4G29110 unknown -1.678 -2.159
120 AT1G55960 AT1G55960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.678 -1.484
121 AT4G33040 AT4G33040 [Thioredoxin superfamily protein] -1.671 -1.324
122 AT2G21320 AT2G21320 BBX18, B-box domain protein 18 -1.656 -2.361
123 AT4G16880 AT4G16880 [Leucine-rich repeat (LRR) family protein] -1.656 -1.386
124 AT1G76530 AT1G76530 [Auxin efflux carrier family protein] -1.652 -1.184
125 AT1G66540 AT1G66540 [Cytochrome P450 superfamily protein] -1.645 -1.657
126 AT5G45850 AT5G45850 unknown -1.608 -1.378
127 AT3G23170 AT3G23170 unknown -1.564 -0.891
128 AT3G04140 AT3G04140 [Ankyrin repeat family protein] -1.562 -1.745
129 AT5G17350 AT5G17350 unknown -1.557 -0.769
130 AT5G66740 AT5G66740 unknown -1.556 -2.566
131 AT4G26530 AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 -1.544 -0.918
132 AT3G52740 AT3G52740 unknown -1.543 -1.963
133 AT5G54130 AT5G54130 [Calcium-binding endonuclease/exonuclease/phosphatase family] -1.538 -1.361
134 AT5G54470 AT5G54470 BBX29, B-box domain protein 29 -1.510 -1.618
135 AT1G26410 AT1G26410 [FAD-binding Berberine family protein] -1.501 1.060
136 AT3G47430 AT3G47430 PEX11B, peroxin 11B -1.496 -1.514
137 AT1G78995 AT1G78995 unknown -1.468 -1.233
138 AT5G17300 AT5G17300 RVE1, REVEILLE 1 -1.456 -1.513
139 AT1G48100 AT1G48100 [Pectin lyase-like superfamily protein] -1.453 -1.981
140 AT1G76955 AT1G76955 [Expressed protein] -1.440 -1.356
141 AT4G11280 AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 -1.439 -0.048
142 AT4G27652 AT4G27652 unknown -1.423 -0.624
143 AT5G24660 AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -1.422 -1.645
144 AT1G18330 AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 -1.405 -0.986
145 AT5G59820 AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 -1.402 0.277
146 AT2G29170 AT2G29170 [NAD(P)-binding Rossmann-fold superfamily protein] -1.397 -1.413
147 AT1G24147 AT1G24147 unknown -1.387 -0.783