4.0:Information of module
short 12-degree-
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010224 response to UV-B BP 3.733e-07
GO:0009628 response to abiotic stimulus BP 5.215e-07
GO:1901700 response to oxygen-containing compound BP 7.732e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0080167 response to karrikin BP 4.080e-04
GO:0006284 base-excision repair BP 6.771e-04
GO:0032879 regulation of localization BP 8.349e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
short 12-degree-		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.525 0.950
2 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.494 0.504
3 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 0.409 0.594
4 264436_at AT1G10370 ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, ERD9, EARLY-RESPONSIVE TO DEHYDRATION 9, GST30, GLUTATHIONE S-TRANSFERASE 30, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GSTU17, GLUTATHIONE S-TRANSFERASE U17 0.399 0.201
5 264261_at AT1G09240 ATNAS3, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, NAS3, nicotianamine synthase 3 0.339 -0.169
6 249677_at AT5G35970 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.327 0.660
7 251753_at AT3G55760 unknown 0.313 0.041
8 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.299 0.527
9 245427_at AT4G17550 AtG3Pp4, glycerol-3-phosphate permease 4, G3Pp4, glycerol-3-phosphate permease 4 0.295 0.872
10 251827_at AT3G55120 A11, AtCHI, CFI, CHALCONE FLAVANONE ISOMERASE, CHI, chalcone isomerase, TT5, TRANSPARENT TESTA 5 0.289 1.283
11 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.283 0.849
12 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.267 -0.445
13 246468_at AT5G17050 UGT78D2, UDP-glucosyl transferase 78D2 0.261 0.813
14 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 0.250 0.529
15 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A 0.232 -0.446
16 257237_at AT3G14890 [phosphoesterase] 0.231 0.435
17 253841_at AT4G27830 AtBGLU10, BGLU10, beta glucosidase 10 0.221 0.004
18 261651_at AT1G27760 ATSAT32, SALT-TOLERANCE 32, SAT32, SALT-TOLERANCE 32 0.220 0.675
19 250151_at AT5G14570 ATNRT2.7, high affinity nitrate transporter 2.7, NRT2.7, high affinity nitrate transporter 2.7 0.219 0.777
20 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 0.212 0.887
21 245200_at AT1G67850 unknown 0.206 -0.298
22 253252_at AT4G34740 ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2, ATASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2, ATPURF2, CIA1, CHLOROPLAST IMPORT APPARATUS 1, DOV1, DIFFERENTIAL DEVELOPMENT OF VASCULAR ASSOCIATED CELLS 0.204 0.474
23 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 0.196 -0.335
24 249038_at AT5G44280 ATRING1A, ARABIDOPSIS THALIANA RING 1A, RING1A, RING 1A 0.186 0.123
25 262881_at AT1G64890 [Major facilitator superfamily protein] 0.186 -0.744
26 263221_at AT1G30620 HSR8, HIGH SUGAR RESPONSE8, MUR4, MURUS 4, UXE1, UDP-D-XYLOSE 4-EPIMERASE 1 0.181 0.218
27 257517_at AT3G16330 unknown 0.178 -0.421
28 261818_at AT1G11390 [Protein kinase superfamily protein] 0.178 0.666
29 265290_at AT2G22590 [UDP-Glycosyltransferase superfamily protein] 0.175 0.117
30 249011_at AT5G44670 GALS2, galactan synthase 2 0.175 0.479
31 247025_at AT5G67030 ABA1, ABA DEFICIENT 1, ATABA1, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ATZEP, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, IBS3, IMPAIRED IN BABA-INDUCED STERILITY 3, LOS6, LOW EXPRESSION OF OSMOTIC STRESS-RESPONSIVE GENES 6, NPQ2, NON-PHOTOCHEMICAL QUENCHING 2, ZEP, ZEAXANTHIN EPOXIDASE 0.171 0.424
32 252956_at AT4G38580 ATFP6, farnesylated protein 6, FP6, farnesylated protein 6, HIPP26, HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26 0.169 0.830
33 249148_at AT5G43260 [chaperone protein dnaJ-related] 0.166 0.960
34 261116_at AT1G75370 [Sec14p-like phosphatidylinositol transfer family protein] 0.162 -0.260
35 260221_at AT1G74670 GASA6, GA-stimulated Arabidopsis 6 -0.736 1.281
36 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.481 -0.030
37 259104_at AT3G02170 LNG2, LONGIFOLIA2, TRM1, TON1 Recruiting Motif 1 -0.465 -0.399
38 260431_at AT1G68190 BBX27, B-box domain protein 27 -0.422 0.431
39 263106_at AT2G05160 [CCCH-type zinc fingerfamily protein with RNA-binding domain] -0.409 -0.337
40 266899_at AT2G34620 [Mitochondrial transcription termination factor family protein] -0.407 -0.012
41 252433_at AT3G47560 [alpha/beta-Hydrolases superfamily protein] -0.354 -0.080
42 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] -0.344 0.410
43 257615_at AT3G26510 [Octicosapeptide/Phox/Bem1p family protein] -0.342 0.162
44 266106_at AT2G45170 ATATG8E, AUTOPHAGY 8E, ATG8E, AUTOPHAGY 8E -0.313 0.362
45 260317_at AT1G63800 UBC5, ubiquitin-conjugating enzyme 5 -0.296 0.170
46 252972_at AT4G38840 SAUR14, SMALL AUXIN UPREGULATED RNA 14 -0.282 0.133
47 265342_at AT2G18300 HBI1, HOMOLOG OF BEE2 INTERACTING WITH IBH 1 -0.275 -0.750
48 247540_at AT5G61590 [Integrase-type DNA-binding superfamily protein] -0.270 -0.182
49 256914_at AT3G23880 [F-box and associated interaction domains-containing protein] -0.248 1.158
50 266873_at AT2G44740 CYCP4;1, cyclin p4;1 -0.237 -0.036
51 266265_at AT2G29340 [NAD-dependent epimerase/dehydratase family protein] -0.225 0.384
52 261294_at AT1G48430 [Dihydroxyacetone kinase] -0.211 -0.029
53 255088_at AT4G09350 CRRJ, CHLORORESPIRATORY REDUCTION J, DJC75, DNA J protein C75, NdhT, NADH dehydrogenase-like complex T -0.209 -0.644
54 248398_at AT5G51970 [GroES-like zinc-binding alcohol dehydrogenase family protein] -0.205 0.655
55 259017_at AT3G07310 unknown -0.205 0.420
56 257772_at AT3G23080 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.204 0.383
57 263118_at AT1G03090 MCCA -0.203 -0.507
58 246114_at AT5G20250 DIN10, DARK INDUCIBLE 10, RS6, raffinose synthase 6 -0.201 0.027
59 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -0.196 -0.562
60 246487_at AT5G16030 unknown -0.192 0.538
61 251402_at AT3G60290 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.191 -0.761
62 248795_at AT5G47390 MYBH, MYB hypocotyl elongation-related -0.189 -0.681
63 256455_at AT1G75190 unknown -0.188 1.035
64 245362_at AT4G17460 HAT1, JAB, JAIBA -0.187 -0.707
65 247284_at AT5G64410 ATOPT4, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, OPT4, oligopeptide transporter 4 -0.187 -0.686
66 257745_at AT3G29240 unknown -0.186 0.358
67 258935_at AT3G10120 unknown -0.184 -1.284