4.0:Information of module
short 12-degree-
In comparison with phyABCDE Dark help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010224 response to UV-B BP 3.733e-07
GO:0009628 response to abiotic stimulus BP 5.215e-07
GO:1901700 response to oxygen-containing compound BP 7.732e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0080167 response to karrikin BP 4.080e-04
GO:0006284 base-excision repair BP 6.771e-04
GO:0032879 regulation of localization BP 8.349e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
short 12-degree-		 Log2 signal ratio
phyABCDE Dark
1 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.525 0.203
2 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.494 0.050
3 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 0.409 0.198
4 264436_at AT1G10370 ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, ERD9, EARLY-RESPONSIVE TO DEHYDRATION 9, GST30, GLUTATHIONE S-TRANSFERASE 30, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GSTU17, GLUTATHIONE S-TRANSFERASE U17 0.399 0.059
5 264261_at AT1G09240 ATNAS3, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, NAS3, nicotianamine synthase 3 0.339 -0.022
6 249677_at AT5G35970 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.327 -0.159
7 251753_at AT3G55760 unknown 0.313 0.006
8 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.299 -0.170
9 245427_at AT4G17550 AtG3Pp4, glycerol-3-phosphate permease 4, G3Pp4, glycerol-3-phosphate permease 4 0.295 0.139
10 251827_at AT3G55120 A11, AtCHI, CFI, CHALCONE FLAVANONE ISOMERASE, CHI, chalcone isomerase, TT5, TRANSPARENT TESTA 5 0.289 0.031
11 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.283 -0.098
12 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.267 0.017
13 246468_at AT5G17050 UGT78D2, UDP-glucosyl transferase 78D2 0.261 0.091
14 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 0.250 0.038
15 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A 0.232 -0.014
16 257237_at AT3G14890 [phosphoesterase] 0.231 0.022
17 253841_at AT4G27830 AtBGLU10, BGLU10, beta glucosidase 10 0.221 0.037
18 261651_at AT1G27760 ATSAT32, SALT-TOLERANCE 32, SAT32, SALT-TOLERANCE 32 0.220 -0.024
19 250151_at AT5G14570 ATNRT2.7, high affinity nitrate transporter 2.7, NRT2.7, high affinity nitrate transporter 2.7 0.219 0.120
20 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 0.212 0.130
21 245200_at AT1G67850 unknown 0.206 0.044
22 253252_at AT4G34740 ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2, ATASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2, ATPURF2, CIA1, CHLOROPLAST IMPORT APPARATUS 1, DOV1, DIFFERENTIAL DEVELOPMENT OF VASCULAR ASSOCIATED CELLS 0.204 0.064
23 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 0.196 -0.007
24 249038_at AT5G44280 ATRING1A, ARABIDOPSIS THALIANA RING 1A, RING1A, RING 1A 0.186 0.138
25 262881_at AT1G64890 [Major facilitator superfamily protein] 0.186 -0.036
26 263221_at AT1G30620 HSR8, HIGH SUGAR RESPONSE8, MUR4, MURUS 4, UXE1, UDP-D-XYLOSE 4-EPIMERASE 1 0.181 0.028
27 257517_at AT3G16330 unknown 0.178 0.053
28 261818_at AT1G11390 [Protein kinase superfamily protein] 0.178 -0.082
29 265290_at AT2G22590 [UDP-Glycosyltransferase superfamily protein] 0.175 0.022
30 249011_at AT5G44670 GALS2, galactan synthase 2 0.175 -0.024
31 247025_at AT5G67030 ABA1, ABA DEFICIENT 1, ATABA1, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ATZEP, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, IBS3, IMPAIRED IN BABA-INDUCED STERILITY 3, LOS6, LOW EXPRESSION OF OSMOTIC STRESS-RESPONSIVE GENES 6, NPQ2, NON-PHOTOCHEMICAL QUENCHING 2, ZEP, ZEAXANTHIN EPOXIDASE 0.171 0.019
32 252956_at AT4G38580 ATFP6, farnesylated protein 6, FP6, farnesylated protein 6, HIPP26, HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26 0.169 0.054
33 249148_at AT5G43260 [chaperone protein dnaJ-related] 0.166 0.036
34 261116_at AT1G75370 [Sec14p-like phosphatidylinositol transfer family protein] 0.162 0.048
35 260221_at AT1G74670 GASA6, GA-stimulated Arabidopsis 6 -0.736 -0.099
36 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.481 -0.143
37 259104_at AT3G02170 LNG2, LONGIFOLIA2, TRM1, TON1 Recruiting Motif 1 -0.465 -0.103
38 260431_at AT1G68190 BBX27, B-box domain protein 27 -0.422 -0.277
39 263106_at AT2G05160 [CCCH-type zinc fingerfamily protein with RNA-binding domain] -0.409 -0.260
40 266899_at AT2G34620 [Mitochondrial transcription termination factor family protein] -0.407 -0.386
41 252433_at AT3G47560 [alpha/beta-Hydrolases superfamily protein] -0.354 -0.362
42 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] -0.344 -0.040
43 257615_at AT3G26510 [Octicosapeptide/Phox/Bem1p family protein] -0.342 -0.012
44 266106_at AT2G45170 ATATG8E, AUTOPHAGY 8E, ATG8E, AUTOPHAGY 8E -0.313 -0.032
45 260317_at AT1G63800 UBC5, ubiquitin-conjugating enzyme 5 -0.296 -0.081
46 252972_at AT4G38840 SAUR14, SMALL AUXIN UPREGULATED RNA 14 -0.282 -0.186
47 265342_at AT2G18300 HBI1, HOMOLOG OF BEE2 INTERACTING WITH IBH 1 -0.275 -0.170
48 247540_at AT5G61590 [Integrase-type DNA-binding superfamily protein] -0.270 0.008
49 256914_at AT3G23880 [F-box and associated interaction domains-containing protein] -0.248 -0.076
50 266873_at AT2G44740 CYCP4;1, cyclin p4;1 -0.237 -0.119
51 266265_at AT2G29340 [NAD-dependent epimerase/dehydratase family protein] -0.225 0.018
52 261294_at AT1G48430 [Dihydroxyacetone kinase] -0.211 0.056
53 255088_at AT4G09350 CRRJ, CHLORORESPIRATORY REDUCTION J, DJC75, DNA J protein C75, NdhT, NADH dehydrogenase-like complex T -0.209 -0.250
54 248398_at AT5G51970 [GroES-like zinc-binding alcohol dehydrogenase family protein] -0.205 -0.101
55 259017_at AT3G07310 unknown -0.205 -0.077
56 257772_at AT3G23080 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.204 -0.046
57 263118_at AT1G03090 MCCA -0.203 -0.171
58 246114_at AT5G20250 DIN10, DARK INDUCIBLE 10, RS6, raffinose synthase 6 -0.201 -0.077
59 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -0.196 -0.009
60 246487_at AT5G16030 unknown -0.192 -0.102
61 251402_at AT3G60290 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.191 0.185
62 248795_at AT5G47390 MYBH, MYB hypocotyl elongation-related -0.189 -0.132
63 256455_at AT1G75190 unknown -0.188 -0.045
64 245362_at AT4G17460 HAT1, JAB, JAIBA -0.187 -0.162
65 247284_at AT5G64410 ATOPT4, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, OPT4, oligopeptide transporter 4 -0.187 -0.200
66 257745_at AT3G29240 unknown -0.186 -0.060
67 258935_at AT3G10120 unknown -0.184 -0.076