4.0:Information of module
whole roots -Fe 6 hour
In comparison with pmr5 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0090304 nucleic acid metabolic process BP 1.273e-03
GO:0071456 cellular response to hypoxia BP 1.642e-03
GO:0036294 cellular response to decreased oxygen le... BP 2.033e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010167 response to nitrate BP 1.481e-06
GO:0015706 nitrate transport BP 9.024e-06
GO:0015698 inorganic anion transport BP 2.174e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
whole roots -Fe 6 hour		 Log2 signal ratio
pmr5
1 261021_at AT1G26380 [FAD-binding Berberine family protein] 0.566 0.201
2 257061_at AT3G18250 [Putative membrane lipoprotein] 0.372 0.093
3 261006_at AT1G26410 [FAD-binding Berberine family protein] 0.351 0.065
4 253044_at AT4G37290 unknown 0.350 0.174
5 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.347 0.160
6 264799_at AT1G08550 AVDE1, ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, NPQ1, non-photochemical quenching 1 0.309 0.002
7 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 0.294 -0.060
8 245860_at AT5G28310 [NAD(P)-binding Rossmann-fold superfamily protein] 0.284 -0.088
9 264837_at AT1G03600 PSB27 0.261 -0.006
10 250670_at AT5G06860 ATPGIP1, POLYGALACTURONASE INHIBITING PROTEIN 1, PGIP1, polygalacturonase inhibiting protein 1 0.242 0.039
11 256337_at AT1G72060 [serine-type endopeptidase inhibitors] 0.240 0.158
12 267459_at AT2G33850 unknown 0.222 0.204
13 255870_at AT2G30280 DMS4, DEFECTIVE IN MERISTEM SILENCING 4, RDM4, RNA-directed DNA methylation 4 0.220 -0.004
14 248299_at AT5G53080 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.219 0.038
15 249111_at AT5G43770 [proline-rich family protein] 0.216 0.050
16 261321_at AT1G44740 unknown 0.213 -0.005
17 263965_at AT2G12870 [gypsy-like retrotransposon family, has a 3.8e-07 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] 0.208 -0.019
18 260014_at AT1G68010 ATHPR1, HPR, hydroxypyruvate reductase 0.205 0.002
19 253742_at AT4G28900 [copia-like retrotransposon family, has a 7.7e-236 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] 0.200 0.064
20 263020_at AT1G23880 [NHL domain-containing protein] 0.192 0.009
21 257562_at AT3G30480 unknown 0.185 -0.093
22 265796_at AT2G35730 [Heavy metal transport/detoxification superfamily protein ] 0.174 -0.060
23 258748_at AT3G05930 GLP8, germin-like protein 8 0.174 0.056
24 266516_at AT2G47880 [Glutaredoxin family protein] 0.169 -0.032
25 257143_at AT3G20110 CYP705A20, cytochrome P450, family 705, subfamily A, polypeptide 20 -0.811 -0.000
26 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] -0.501 0.015
27 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] -0.349 -0.087
28 258541_at AT3G07000 [Cysteine/Histidine-rich C1 domain family protein] -0.303 -0.104
29 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 -0.271 -0.024
30 247581_at AT5G61350 [Protein kinase superfamily protein] -0.269 -0.121
31 260987_at AT1G53590 NTMC2T6.1, NTMC2TYPE6.1 -0.264 -0.053
32 249868_at AT5G23030 TET12, tetraspanin12 -0.244 -0.032
33 264698_at AT1G70200 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.241 -0.036
34 264348_at AT1G12110 AtNPF6.3, ATNRT1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, B-1, CHL1, CHLORINA 1, CHL1-1, NPF6.3, NRT1/ PTR family 6.3, NRT1, NITRATE TRANSPORTER 1, NRT1.1, nitrate transporter 1.1 -0.232 -0.071
35 252205_at AT3G50350 unknown -0.226 0.008
36 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 -0.215 0.094
37 261318_at AT1G53035 unknown -0.206 -0.071
38 260628_at AT1G62320 [ERD (early-responsive to dehydration stress) family protein] -0.194 0.089
39 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 -0.187 -0.088
40 254545_at AT4G19830 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] -0.184 -0.002
41 254575_at AT4G19460 [UDP-Glycosyltransferase superfamily protein] -0.183 0.017
42 267276_at AT2G30130 ASL5, LBD12, PCK1, PEACOCK 1 -0.178 -0.056
43 261846_at AT1G11540 [Sulfite exporter TauE/SafE family protein] -0.178 -0.039
44 264029_at AT2G03720 MRH6, morphogenesis of root hair 6 -0.175 -0.079
45 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 -0.172 -0.251
46 254979_at AT4G10550 [Subtilase family protein] -0.172 0.026
47 263763_at AT2G21385 unknown -0.169 -0.011