4.0:Information of module
root longitudinal zone-2 -Fe
In comparison with lec1-1 24h post-fertilization Seed help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0055076 transition metal ion homeostasis BP 1.551e-05
GO:0055072 iron ion homeostasis BP 3.952e-05
GO:0055065 metal ion homeostasis BP 4.772e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006082 organic acid metabolic process BP 1.754e-05
GO:0043436 oxoacid metabolic process BP 1.754e-05
GO:0019752 carboxylic acid metabolic process BP 2.809e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root longitudinal zone-2 -Fe		 Log2 signal ratio
lec1-1 24h post-fertilization Seed
1 251677_at AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 1.333 -0.732
2 261684_at AT1G47400 unknown 1.051 -0.874
3 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 0.978 -0.288
4 250828_at AT5G05250 unknown 0.887 -0.782
5 245692_at AT5G04150 BHLH101 0.759 -0.508
6 260522_x_at AT2G41730 unknown 0.539 -0.855
7 251704_at AT3G56360 unknown 0.532 -0.483
8 263515_at AT2G21640 unknown 0.506 0.092
9 246998_at AT5G67370 CGLD27, CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27 0.481 0.408
10 262238_at AT1G48300 DGAT3, diacylglycerol acyltransferase 3 0.481 0.998
11 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.466 0.237
12 264751_at AT1G23020 ATFRO3, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 0.465 -0.720
13 251620_at AT3G58060 [Cation efflux family protein] 0.387 -0.337
14 251480_at AT3G59710 [NAD(P)-binding Rossmann-fold superfamily protein] 0.384 -0.746
15 257490_x_at AT1G01380 ETC1, ENHANCER OF TRY AND CPC 1 0.323 -0.820
16 249668_at AT5G35870 unknown 0.273 -0.115
17 263402_at AT2G04050 [MATE efflux family protein] 0.227 -0.092
18 258551_at AT3G06890 unknown 0.222 -0.415
19 249882_at AT5G22890 STOP2, sensitive to proton rhizotoxicity 2 0.207 -0.334
20 253535_at AT4G31550 ATWRKY11, WRKY11, WRKY DNA-binding protein 11 0.203 -0.281
21 261700_at AT1G32690 unknown 0.181 0.343
22 247001_at AT5G67330 ATNRAMP4, ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, NRAMP4, natural resistance associated macrophage protein 4 0.176 -0.055
23 252497_at AT3G46800 [Cysteine/Histidine-rich C1 domain family protein] 0.175 0.141
24 253680_at AT4G29620 [Cytidine/deoxycytidylate deaminase family protein] 0.170 -0.682
25 258541_at AT3G07000 [Cysteine/Histidine-rich C1 domain family protein] 0.168 -0.260
26 253788_at AT4G28680 AtTYDC, TYDC, L-tyrosine decarboxylase, TYRDC, L-tyrosine decarboxylase, TYRDC1, L-TYROSINE DECARBOXYLASE 1 0.160 -0.462
27 252698_at AT3G43670 [Copper amine oxidase family protein] -0.643 0.614
28 252300_at AT3G49160 [pyruvate kinase family protein] -0.553 0.669
29 262283_at AT1G68590 PSRP3/1, plastid-specific ribosomal protein 3/1 -0.337 0.287
30 260236_at AT1G74470 [Pyridine nucleotide-disulphide oxidoreductase family protein] -0.315 0.549
31 263553_at AT2G16430 ATPAP10, PAP10, purple acid phosphatase 10 -0.221 0.319
32 255142_at AT4G08390 SAPX, stromal ascorbate peroxidase -0.199 0.844
33 254102_at AT4G25050 ACP4, acyl carrier protein 4 -0.186 0.858
34 259723_at AT1G60960 ATIRT3, IRON REGULATED TRANSPORTER 3, IRT3, iron regulated transporter 3 -0.163 0.252
35 263610_at AT2G16230 [O-Glycosyl hydrolases family 17 protein] -0.163 -0.532
36 265569_at AT2G05620 AtPGR5, PGR5, proton gradient regulation 5 -0.139 0.719
37 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 -0.126 -0.712
38 253753_at AT4G29030 [Putative membrane lipoprotein] -0.123 0.349
39 249766_at AT5G24070 [Peroxidase superfamily protein] -0.122 0.226
40 245110_at AT2G41550 [Rho termination factor] -0.112 1.104
41 252604_at AT3G45060 ATNRT2.6, ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, NRT2.6, high affinity nitrate transporter 2.6 -0.109 0.895
42 245591_at AT4G14530 unknown -0.084 -1.011
43 249969_at AT5G19090 [Heavy metal transport/detoxification superfamily protein ] -0.076 0.878
44 247222_at AT5G64840 ABCF5, ATP-binding cassette F5, ATGCN5, general control non-repressible 5, GCN5, general control non-repressible 5 -0.071 0.105
45 247563_at AT5G61130 AtPDCB1, PDCB1, plasmodesmata callose-binding protein 1 -0.069 1.091
46 261338_at AT1G44920 unknown -0.068 0.955
47 264589_at AT2G17650 [AMP-dependent synthetase and ligase family protein] -0.066 0.792
48 265751_at AT2G10690 [gypsy-like retrotransposon family (Athila), has a 9.8e-118 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)] -0.065 -0.532
49 267225_at AT2G44000 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.057 -0.038
50 247138_at AT5G66120 [3-dehydroquinate synthase, putative] -0.054 0.817
51 267038_at AT2G38480 [Uncharacterised protein family (UPF0497)] -0.051 0.735