4.0:Information of module
root - 01% oxygen - 30min
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0036293 response to decreased oxygen levels BP 2.422e-13
GO:0070482 response to oxygen levels BP 3.088e-13
GO:0001666 response to hypoxia BP 2.489e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019725 cellular homeostasis BP 2.409e-03
GO:0071365 cellular response to auxin stimulus BP 2.822e-03
GO:0009582 detection of abiotic stimulus BP 3.209e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root - 01% oxygen - 30min		 Log2 signal ratio
Leafminer damaged seedlings
1 255807_at AT4G10270 [Wound-responsive family protein] 1.183 0.039
2 250464_at AT5G10040 unknown 1.086 0.076
3 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 1.060 -0.105
4 253298_at AT4G33560 [Wound-responsive family protein] 0.910 -0.020
5 254200_at AT4G24110 unknown 0.827 0.395
6 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.804 0.012
7 247431_at AT5G62520 SRO5, similar to RCD one 5 0.801 0.976
8 257925_at AT3G23170 unknown 0.720 0.469
9 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.679 0.147
10 259879_at AT1G76650 CML38, calmodulin-like 38 0.664 1.263
11 249384_at AT5G39890 unknown 0.605 0.020
12 250152_at AT5G15120 unknown 0.547 -0.041
13 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] 0.537 0.017
14 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.478 0.001
15 261567_at AT1G33055 unknown 0.446 0.015
16 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.443 0.117
17 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 0.437 -0.077
18 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.425 0.076
19 254522_at AT4G19980 unknown 0.423 -0.027
20 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.416 -0.015
21 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.385 0.097
22 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.383 0.198
23 266486_at AT2G47950 unknown 0.362 0.499
24 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.324 0.048
25 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 0.323 -0.025
26 247024_at AT5G66985 unknown 0.318 -0.016
27 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.306 0.606
28 245401_at AT4G17670 unknown 0.300 -0.171
29 259293_at AT3G11580 [AP2/B3-like transcriptional factor family protein] 0.272 0.326
30 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 0.206 0.304
31 262003_at AT1G64460 [Protein kinase superfamily protein] 0.194 0.168
32 262741_at AT1G28760 [Uncharacterized conserved protein (DUF2215)] 0.191 -0.090
33 259685_at AT1G63090 AtPP2-A11, phloem protein 2-A11, PP2-A11, phloem protein 2-A11 0.190 0.142
34 252905_at AT4G39720 [VQ motif-containing protein] 0.190 0.067
35 258493_at AT3G02555 unknown 0.189 -0.058
36 258349_at AT3G17609 HYH, HY5-homolog 0.188 -0.211
37 257467_at AT1G31320 LBD4, LOB domain-containing protein 4 0.188 -0.224
38 246274_at AT4G36620 GATA19, GATA transcription factor 19, HANL2, hanaba taranu like 2 0.181 -0.101
39 264939_at AT1G60630 [Leucine-rich repeat protein kinase family protein] 0.176 -0.121
40 252128_at AT3G50870 GATA18, GATA TRANSCRIPTION FACTOR 18, HAN, HANABA TANARU, MNP, MONOPOLE 0.174 -0.076
41 250413_at AT5G11160 APT5, adenine phosphoribosyltransferase 5 0.173 -0.189
42 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] 0.167 0.244
43 245324_at AT4G17260 [Lactate/malate dehydrogenase family protein] 0.166 0.165
44 253404_at AT4G32840 PFK6, phosphofructokinase 6 0.162 -0.163
45 248230_at AT5G53830 [VQ motif-containing protein] 0.160 -0.128
46 250223_at AT5G14070 ROXY2 0.154 -0.033
47 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.151 -0.176
48 253215_at AT4G34950 [Major facilitator superfamily protein] 0.149 0.029
49 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 0.148 1.153
50 251178_at AT3G63440 ATCKX6, CYTOKININ OXIDASE 6, ATCKX7, CKX6, cytokinin oxidase/dehydrogenase 6 0.145 -0.279
51 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 0.143 0.446
52 251031_at AT5G02120 OHP, one helix protein, PDE335, PIGMENT DEFECTIVE 335 0.142 -0.179
53 245466_at AT4G16600 PGSIP8, plant glycogenin-like starch initiation protein 8 0.132 0.032
54 263155_at AT1G54140 TAF9, TBP-ASSOCIATED FACTOR 9, TAFII21, TATA binding protein associated factor 21kDa subunit 0.131 0.079
55 262787_at AT1G10730 AP1M1, adaptor protein-1 mu-adaptin 1 -0.245 0.040
56 251545_at AT3G58810 ATMTP3, ARABIDOPSIS METAL TOLERANCE PROTEIN 3, ATMTPA2, MTP3, METAL TOLERANCE PROTEIN 3, MTPA2, metal tolerance protein A2 -0.234 -0.013
57 252047_at AT3G52490 SMXL3, SMAX1-like 3 -0.197 -0.264
58 251652_at AT3G57380 [Glycosyltransferase family 61 protein] -0.181 0.162
59 264405_at AT1G10210 ATMPK1, mitogen-activated protein kinase 1, MPK1, mitogen-activated protein kinase 1 -0.178 0.057
60 247828_at AT5G58510 unknown -0.170 0.036
61 247795_at AT5G58620 TZF9, tandem zinc finger protein 9 -0.169 0.161
62 267168_at AT2G37770 AKR4C9, Aldo-keto reductase family 4 member C9, ChlAKR, Chloroplastic aldo-keto reductase -0.162 0.811
63 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 -0.151 -0.244
64 255547_at AT4G01920 [Cysteine/Histidine-rich C1 domain family protein] -0.150 -0.040
65 248934_at AT5G46080 [Protein kinase superfamily protein] -0.149 0.625
66 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] -0.147 0.050
67 255285_at AT4G04630 unknown -0.142 -0.143
68 254629_at AT4G18425 unknown -0.141 -0.040
69 258311_at AT3G26810 AFB2, auxin signaling F-box 2 -0.135 -0.141
70 249066_at AT5G43920 [transducin family protein / WD-40 repeat family protein] -0.132 -0.185
71 248788_at AT5G47430 [DWNN domain, a CCHC-type zinc finger] -0.132 -0.001
72 255221_at AT4G05150 [Octicosapeptide/Phox/Bem1p family protein] -0.125 0.154
73 254752_at AT4G13160 unknown -0.124 -0.077
74 260800_at AT1G78240 OSU1, QUA2, QUASIMODO2, TSD2, TUMOROUS SHOOT DEVELOPMENT 2 -0.123 0.141
75 254270_at AT4G23100 ATECS1, AtGSH1, CAD2, CADMIUM SENSITIVE 2, GSH1, glutamate-cysteine ligase, GSHA, PAD2, PHYTOALEXIN DEFICIENT 2, RML1, ROOT MERISTEMLESS 1 -0.123 0.019
76 248242_at AT5G53580 AtPLR1, PLR1, pyridoxal reductase 1 -0.118 -0.177
77 256422_at AT1G33520 MOS2, modifier of snc1, 2 -0.115 -0.056
78 261052_at AT1G01440 unknown -0.113 -0.141
79 258834_at AT3G07270 [GTP cyclohydrolase I] -0.112 -0.130
80 263961_at AT2G36370 [ubiquitin-protein ligases] -0.112 -0.191
81 264980_at AT1G27190 [Leucine-rich repeat protein kinase family protein] -0.112 -0.210
82 260414_at AT1G69850 AIT1, ABA-importing transporter 1, AtNPF4.6, ATNRT1:2, nitrate transporter 1:2, NPF4.6, NRT1/ PTR family 4.6, NRT1.2, NRT1:2, nitrate transporter 1:2, NTL1 -0.108 -0.059
83 257142_at AT3G20090 CYP705A18, cytochrome P450, family 705, subfamily A, polypeptide 18 -0.107 -0.050
84 263305_at AT2G01930 ATBPC1, BASIC PENTACYSTEINE1, BBR, BPC1, basic pentacysteine1 -0.107 0.113
85 259420_at AT1G13900 PAP2, purple acid phosphatase 2 -0.107 -0.012
86 258262_at AT3G15770 unknown -0.106 0.063
87 267377_at AT2G26250 FDH, FIDDLEHEAD, KCS10, 3-ketoacyl-CoA synthase 10 -0.106 -0.120
88 252072_at AT3G51710 [D-mannose binding lectin protein with Apple-like carbohydrate-binding domain] -0.106 -0.201
89 253614_at AT4G30350 SMXL2, SMAX1-like 2 -0.105 0.520
90 252164_at AT3G50620 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.105 0.250
91 255788_at AT2G33310 IAA13, auxin-induced protein 13 -0.103 -0.233
92 255626_at AT4G00780 [TRAF-like family protein] -0.103 0.012
93 259400_at AT1G17750 AtPEPR2, PEP1 RECEPTOR 2, PEPR2, PEP1 receptor 2 -0.103 0.593
94 265008_at AT1G61560 ATMLO6, MILDEW RESISTANCE LOCUS O 6, MLO6, MILDEW RESISTANCE LOCUS O 6 -0.102 0.661
95 253662_at AT4G30080 ARF16, auxin response factor 16 -0.100 -0.179
96 251261_at AT3G62110 [Pectin lyase-like superfamily protein] -0.100 -0.276
97 264540_at AT1G55630 [Pentatricopeptide repeat (PPR) superfamily protein] -0.098 -0.084
98 258910_at AT3G06480 [DEAD box RNA helicase family protein] -0.097 -0.100
99 252684_at AT3G44400 [Disease resistance protein (TIR-NBS-LRR class) family] -0.097 0.183
100 264712_at AT1G09810 ECT11, evolutionarily conserved C-terminal region 11 -0.095 -0.231
101 260382_at AT1G73850 [FUNCTIONS IN: structural constituent of ribosome] -0.095 -0.058
102 259340_at AT3G03870 unknown -0.095 0.102
103 247974_at AT5G56780 ATET2, ARABIDOPSIS EFFECTOR OF TRANSCRIPTION2, ET2, effector of transcription2 -0.094 -0.102
104 246399_at AT1G58110 [Basic-leucine zipper (bZIP) transcription factor family protein] -0.094 -0.187
105 255266_at AT4G05200 CRK25, cysteine-rich RLK (RECEPTOR-like protein kinase) 25 -0.093 0.001
106 250080_at AT5G16620 ATTIC40, translocon at the inner envelope membrane of chloroplasts 40, PDE120, pigment defective embryo 120, TIC40, translocon at the inner envelope membrane of chloroplasts 40 -0.093 -0.084
107 261290_at AT1G36990 unknown -0.092 -0.079