4.0:Information of module
general seed coat pre-globular
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0005975 carbohydrate metabolic process BP 1.674e-04
GO:0007010 cytoskeleton organization BP 1.930e-04
GO:0031334 positive regulation of protein complex a... BP 1.283e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0005984 disaccharide metabolic process BP 2.651e-04
GO:0009311 oligosaccharide metabolic process BP 7.094e-04
GO:0006790 sulfur compound metabolic process BP 2.089e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
general seed coat pre-globular		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 250585_at AT5G07620 [Protein kinase superfamily protein] 0.656 0.056
2 255460_at AT4G02800 unknown 0.635 -0.145
3 250494_at AT5G09740 HAC11, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 11, HAG05, HAG5, HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 5, HAM2, histone acetyltransferase of the MYST family 2 0.572 0.048
4 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 0.546 0.198
5 253048_at AT4G37560 [Acetamidase/Formamidase family protein] 0.533 -0.113
6 262106_at AT1G02970 ATWEE1, WEE1, WEE1 kinase homolog 0.533 -0.007
7 258024_at AT3G19360 [Zinc finger (CCCH-type) family protein] 0.528 0.312
8 258098_at AT3G23670 KINESIN-12B, PAKRP1L 0.507 -0.161
9 246246_at AT4G37170 [Pentatricopeptide repeat (PPR) superfamily protein] 0.493 -0.019
10 247556_at AT5G61040 unknown 0.490 -0.152
11 251665_at AT3G57040 ARR9, response regulator 9, ATRR4, RESPONSE REGULATOR 4 0.472 -0.098
12 264183_at AT1G65380 AtRLP10, Receptor Like Protein 10, CLV2, clavata 2 0.465 0.082
13 247530_at AT5G61540 [N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein] 0.438 0.164
14 247104_at AT5G66620 DAR6, DA1-related protein 6 0.427 -0.169
15 245673_at AT1G56690 [Pentatricopeptide repeat (PPR) superfamily protein] 0.418 0.187
16 258257_at AT3G26770 [NAD(P)-binding Rossmann-fold superfamily protein] 0.402 -0.144
17 245440_at AT4G16680 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.375 0.019
18 255870_at AT2G30280 DMS4, DEFECTIVE IN MERISTEM SILENCING 4, RDM4, RNA-directed DNA methylation 4 0.366 -0.045
19 264761_at AT1G61280 [Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit] 0.361 0.041
20 261463_at AT1G07740 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.360 0.073
21 267019_at AT2G39130 [Transmembrane amino acid transporter family protein] 0.343 0.038
22 245169_at AT2G33220 [GRIM-19 protein] 0.340 0.166
23 254267_at AT4G22930 DHOASE, DIHYDROOROTASE, PYR4, pyrimidin 4 0.340 0.015
24 251095_at AT5G01510 RUS5, ROOT UV-B SENSITIVE 5 0.338 -0.011
25 258927_at AT3G10160 ATDFC, A. THALIANA DHFS-FPGS HOMOLOG C, DFC, DHFS-FPGS homolog C, FPGS2, folylpolyglutamate synthetase 2 0.334 -0.036
26 258117_at AT3G14700 [SART-1 family] 0.330 -0.108
27 245739_at AT1G44110 CYCA1;1, Cyclin A1;1 0.329 -0.040
28 255506_at AT4G02130 GATL6, galacturonosyltransferase-like 6, LGT10 0.310 0.014
29 262029_at AT1G35680 RPL21C, chloroplast ribosomal protein L21 0.305 -0.021
30 258328_at AT3G16090 AtHrd1A, homolog of yeast Hrd1, Hrd1A, homolog of yeast Hrd1 0.304 -0.077
31 257652_at AT3G16810 APUM24, pumilio 24, PUM24, pumilio 24 0.298 -0.082
32 265278_at AT2G28330 unknown 0.290 -0.089
33 267249_at AT2G23040 unknown 0.289 0.145
34 263192_at AT1G36160 ACC1, acetyl-CoA carboxylase 1, AT-ACC1, EMB22, EMBRYO DEFECTIVE 22, GK, GURKE, GSD1, GLOSSYHEAD 1, PAS3, PASTICCINO 3, SFR3, SENSITIVE TO FREEZING 3 0.287 -0.255
35 245318_at AT4G16980 [arabinogalactan-protein family] 0.286 -0.077
36 252969_at AT4G38900 [Basic-leucine zipper (bZIP) transcription factor family protein] 0.286 0.005
37 257943_at AT3G21840 ASK7, SKP1-like 7, SK7, SKP1-like 7 -1.352 0.193
38 249332_at AT5G40980 unknown -1.205 0.103
39 265517_at AT2G06090 [Plant self-incompatibility protein S1 family] -1.172 -0.201
40 254307_at AT4G22400 unknown -1.150 0.103
41 257942_at AT3G21830 ASK8, SKP1-like 8, SK8, SKP1-like 8 -1.144 0.135
42 260848_at AT1G21850 sks8, SKU5 similar 8 -1.142 -0.145
43 259753_at AT1G71050 HIPP20, heavy metal associated isoprenylated plant protein 20 -1.125 0.261
44 263026_at AT1G24000 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.114 -0.023
45 254490_at AT4G20320 [CTP synthase family protein] -1.091 0.195
46 263905_at AT2G36190 AtCWIN4, AtcwINV4, cell wall invertase 4, cwINV4, cell wall invertase 4 -1.070 -0.132
47 256104_at AT1G16980 ATTPS2, trehalose-phosphatase/synthase 2, TPS2, TREHALOSE -6-PHOSPHATASE SYNTHASE S2, TPS2, trehalose-phosphatase/synthase 2 -1.065 -0.022
48 256569_at AT3G19550 unknown -1.004 -0.125
49 256214_x_at AT1G51000 unknown -0.967 -0.034
50 255956_at AT1G22015 DD46 -0.945 -0.062
51 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.930 -0.505
52 257243_at AT3G24230 [Pectate lyase family protein] -0.928 0.281
53 256773_at AT3G13630 unknown -0.917 0.007
54 245947_at AT5G19530 ACL5, ACAULIS 5 -0.916 0.215
55 249401_at AT5G40260 AtSWEET8, RPG1, RUPTURED POLLEN GRAIN1, SWEET8 -0.914 0.014
56 253676_at AT4G29570 [Cytidine/deoxycytidylate deaminase family protein] -0.914 0.050
57 258122_at AT3G14570 ATGSL04, glucan synthase-like 4, atgsl4, gsl04, GSL04, glucan synthase-like 4 -0.899 -0.010
58 253632_at AT4G30430 TET9, tetraspanin9 -0.899 -0.034
59 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.899 -0.141
60 250485_at AT5G09990 PROPEP5, elicitor peptide 5 precursor -0.875 0.090
61 254295_at AT4G23080 unknown -0.874 -0.062
62 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH -0.865 -0.100
63 245656_at AT1G56620 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.862 0.088
64 256788_at AT3G13730 CYP90D1, cytochrome P450, family 90, subfamily D, polypeptide 1 -0.853 -0.017
65 259426_at AT1G01470 LEA14, LATE EMBRYOGENESIS ABUNDANT 14, LSR3, LIGHT STRESS-REGULATED 3 -0.830 -0.139
66 259972_at AT1G76420 ANAC031, Arabidopsis NAC domain containing protein 31, CUC3, CUP SHAPED COTYLEDON3, NAC368 -0.820 -0.032
67 248620_at AT5G49320 unknown -0.816 -0.002
68 245341_at AT4G16447 unknown -0.801 0.171
69 252920_at AT4G39000 AtGH9B17, glycosyl hydrolase 9B17, GH9B17, glycosyl hydrolase 9B17 -0.790 0.002
70 261410_at AT1G07610 MT1C, metallothionein 1C -0.782 -0.000
71 248801_at AT5G47370 HAT2 -0.765 0.010