4.0:Information of module
general seed coat linear-cotyledon
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009813 flavonoid biosynthetic process BP 4.555e-04
GO:0009608 response to symbiont BP 8.405e-04
GO:0009610 response to symbiotic fungus BP 8.405e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006412 translation BP 3.931e-21
GO:0001510 RNA methylation BP 3.098e-17
GO:0009451 RNA modification BP 7.980e-15
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
general seed coat linear-cotyledon		 Log2 signal ratio
bri1-116
1 265321_at AT2G18280 AtTLP2, tubby like protein 2, TLP2, tubby like protein 2 0.925 0.058
2 253289_at AT4G34320 unknown 0.901 -0.043
3 254170_at AT4G24430 [Rhamnogalacturonate lyase family protein] 0.786 0.070
4 250149_at AT5G14700 [NAD(P)-binding Rossmann-fold superfamily protein] 0.784 -0.144
5 266866_at AT2G29940 ABCG31, ATP-binding cassette G31, ATPDR3, PLEIOTROPIC DRUG RESISTANCE 3, PDR3, pleiotropic drug resistance 3 0.698 0.038
6 258465_at AT3G17220 ATPMEI2, PMEI2, pectin methylesterase inhibitor 2 0.691 0.034
7 258080_at AT3G25930 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.686 -0.667
8 261999_at AT1G33800 AtGXMT1, GXM1, glucuronoxylan methyltransferase 1, GXMT1, glucuronoxylan methyltransferase 1 0.667 -0.289
9 258982_at AT3G08870 LecRK-VI.1, L-type lectin receptor kinase VI.1 0.659 0.071
10 251600_at AT3G57710 [Protein kinase superfamily protein] 0.650 0.084
11 261212_at AT1G12880 atnudt12, nudix hydrolase homolog 12, NUDT12, nudix hydrolase homolog 12 0.648 -0.074
12 250302_at AT5G11920 AtcwINV6, 6-&1-fructan exohydrolase, cwINV6, 6-&1-fructan exohydrolase 0.622 -0.335
13 245663_at AT1G28170 SOT7, sulphotransferase 7 0.615 0.023
14 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] 0.607 0.171
15 255550_at AT4G01970 AtSTS, stachyose synthase, RS4, raffinose synthase 4, STS, stachyose synthase 0.588 0.042
16 264909_at AT2G17300 unknown 0.542 -0.529
17 260437_at AT1G68380 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.533 0.047
18 266362_at AT2G32430 [Galactosyltransferase family protein] 0.530 -0.342
19 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 0.522 -0.028
20 263277_at AT2G14110 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.513 0.021
21 262739_at AT1G28650 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.509 0.025
22 247213_at AT5G64900 ATPEP1, ARABIDOPSIS THALIANA PEPTIDE 1, PEP1, PEPTIDE 1, PROPEP1, precursor of peptide 1 0.505 -0.073
23 260496_at AT2G41700 ABCA1, ATP-binding cassette A1, AtABCA1, Arabidopsis thaliana ATP-binding cassette A1 0.495 -0.008
24 250106_at AT5G16640 [Pentatricopeptide repeat (PPR) superfamily protein] 0.480 0.068
25 248543_at AT5G50230 [Transducin/WD40 repeat-like superfamily protein] 0.470 -0.009
26 256883_at AT3G26440 unknown 0.469 -0.176
27 259817_at AT1G49880 AtErv1, EMB3106, EMBRYO DEFECTIVE 3106, Erv1, Erv1 0.465 -0.044
28 264729_at AT1G22990 HIPP22, heavy metal associated isoprenylated plant protein 22 0.463 0.074
29 265918_at AT2G15090 KCS8, 3-ketoacyl-CoA synthase 8 0.459 0.163
30 249955_at AT5G18840 [Major facilitator superfamily protein] 0.436 0.100
31 263265_at AT2G38820 unknown 0.434 0.081
32 248359_at AT5G52410 unknown 0.433 0.064
33 267305_at AT2G30070 ATKT1, potassium transporter 1, ATKT1P, ATKUP1, KT1, potassium transporter 1, KUP1, POTASSIUM UPTAKE TRANSPORTER 1 0.431 0.440
34 255357_at AT4G03930 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.429 0.040
35 251686_at AT3G56440 ATATG18D, homolog of yeast autophagy 18 (ATG18) D, ATG18D, homolog of yeast autophagy 18 (ATG18) D 0.427 -0.037
36 264828_at AT1G03380 ATATG18G, homolog of yeast autophagy 18 (ATG18) G, ATG18G, homolog of yeast autophagy 18 (ATG18) G 0.427 -0.081
37 254492_at AT4G20260 ATPCAP1, ARABIDOPSIS THALIANA PLASMA-MEMBRANE ASSOCIATED CATION-BINDING PROTEIN 1, MDP25, microtubule-destabilizing protein 25, PCAP1, plasma-membrane associated cation-binding protein 1 0.424 -0.242
38 264071_at AT2G27920 SCPL51, serine carboxypeptidase-like 51 0.424 -0.266
39 254344_at AT4G22110 [GroES-like zinc-binding dehydrogenase family protein] 0.422 0.003
40 255103_at AT4G08690 [Sec14p-like phosphatidylinositol transfer family protein] 0.412 -0.002
41 253800_at AT4G28160 [hydroxyproline-rich glycoprotein family protein] 0.408 0.114
42 260607_at AT2G43700 LecRK-V.4, L-type lectin receptor kinase V.4 0.404 0.090
43 252898_at AT4G39500 CYP96A11, cytochrome P450, family 96, subfamily A, polypeptide 11 0.403 -0.015
44 249865_at AT5G22820 [ARM repeat superfamily protein] 0.403 0.000
45 245670_at AT1G28210 ATJ1 0.403 -0.029
46 253990_at AT4G26160 ACHT1, atypical CYS HIS rich thioredoxin 1 0.395 0.095
47 255794_at AT2G33480 ANAC041, NAC domain containing protein 41, NAC041, NAC domain containing protein 41 0.390 -0.118
48 255424_at AT4G03340 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.389 0.211
49 264314_at AT1G70420 unknown 0.384 -0.102
50 252822_at AT4G39955 [alpha/beta-Hydrolases superfamily protein] 0.382 -0.066
51 252319_at AT3G48710 [DEK domain-containing chromatin associated protein] 0.376 0.013
52 265020_at AT1G24540 CYP86C1, cytochrome P450, family 86, subfamily C, polypeptide 1 0.370 0.021
53 265913_at AT2G25625 unknown 0.368 -0.010
54 261812_at AT1G08270 unknown 0.367 0.040
55 265957_at AT2G37300 ABCI16, ATP-binding cassette I16 0.364 -0.146
56 254281_at AT4G22840 [Sodium Bile acid symporter family] 0.363 -0.157
57 259671_at AT1G52290 AtPERK15, proline-rich extensin-like receptor kinase 15, PERK15, proline-rich extensin-like receptor kinase 15 0.362 -0.215
58 247929_at AT5G57330 [Galactose mutarotase-like superfamily protein] 0.359 -0.033
59 250018_at AT5G18150 [Methyltransferase-related protein] 0.352 -0.030
60 259304_at AT3G05210 ERCC1, UVR7, UV REPAIR DEFICIENT 7 0.352 0.039
61 260683_at AT1G17560 HLL, HUELLENLOS 0.350 0.021
62 253908_at AT4G27260 GH3.5, WES1 -1.181 0.154
63 252272_at AT3G49670 BAM2, BARELY ANY MERISTEM 2 -0.951 0.084
64 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.924 0.094
65 247904_at AT5G57390 AIL5, AINTEGUMENTA-like 5, CHO1, CHOTTO 1, EMK, EMBRYOMAKER, PLT5, PLETHORA 5 -0.905 0.045
66 250642_at AT5G07180 ERL2, ERECTA-like 2 -0.872 0.195
67 261503_at AT1G71691 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.869 0.014
68 263553_at AT2G16430 ATPAP10, PAP10, purple acid phosphatase 10 -0.848 0.149
69 266223_at AT2G28790 [Pathogenesis-related thaumatin superfamily protein] -0.813 0.134
70 248028_at AT5G55620 unknown -0.802 0.291
71 251899_at AT3G54400 [Eukaryotic aspartyl protease family protein] -0.801 -0.068
72 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.799 -0.855
73 250413_at AT5G11160 APT5, adenine phosphoribosyltransferase 5 -0.783 0.182
74 261921_at AT1G65900 unknown -0.783 -0.036
75 245138_at AT2G45190 AFO, ABNORMAL FLORAL ORGANS, FIL, FILAMENTOUS FLOWER, YAB1, YABBY1 -0.782 0.107
76 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 -0.766 0.023
77 259845_at AT1G73590 ATPIN1, ARABIDOPSIS THALIANA PIN-FORMED 1, PIN1, PIN-FORMED 1 -0.765 -0.190
78 251986_at AT3G53310 [AP2/B3-like transcriptional factor family protein] -0.759 0.038
79 265099_at AT1G03990 [Long-chain fatty alcohol dehydrogenase family protein] -0.743 0.074
80 251181_at AT3G62820 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.734 0.210
81 263574_at AT2G16990 [Major facilitator superfamily protein] -0.733 -0.012
82 260608_at AT2G43870 [Pectin lyase-like superfamily protein] -0.733 -0.112
83 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.715 -0.172
84 267431_at AT2G34870 MEE26, maternal effect embryo arrest 26 -0.715 -0.012
85 266358_at AT2G32280 VCC, VASCULATURE COMPLEXITY AND CONNECTIVITY -0.715 -0.176
86 256971_at AT3G21100 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.686 -0.013
87 266770_at AT2G03090 ATEXP15, ATEXPA15, expansin A15, ATHEXP ALPHA 1.3, EXP15, EXPANSIN 15, EXPA15, expansin A15 -0.683 -0.109
88 266929_at AT2G45850 AHL9, AT-hook motif nuclear localized protein 9 -0.659 0.122
89 247266_at AT5G64570 ATBXL4, ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, XYL4, beta-D-xylosidase 4 -0.628 -0.281
90 265379_at AT2G18340 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.621 0.057
91 261502_at AT1G14440 AtHB31, homeobox protein 31, FTM2, FLORAL TRANSITION AT THE MERISTEM2, HB31, homeobox protein 31, ZHD4, ZINC FINGER HOMEODOMAIN 4 -0.599 0.278
92 254293_at AT4G23060 IQD22, IQ-domain 22 -0.587 0.252
93 262414_at AT1G49430 LACS2, long-chain acyl-CoA synthetase 2, LRD2, LATERAL ROOT DEVELOPMENT 2 -0.585 0.009
94 258504_at AT3G02590 [Fatty acid hydroxylase superfamily protein] -0.580 -0.019
95 251940_at AT3G53450 LOG4, LONELY GUY 4 -0.579 -0.004
96 252210_at AT3G50410 OBP1, OBF binding protein 1 -0.571 0.188
97 259935_at AT1G71250 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.570 -0.052
98 253720_at AT4G29270 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.564 -0.109
99 253513_at AT4G31760 [Peroxidase superfamily protein] -0.562 0.046
100 252954_at AT4G38660 [Pathogenesis-related thaumatin superfamily protein] -0.552 0.034
101 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 -0.551 0.778
102 258098_at AT3G23670 KINESIN-12B, PAKRP1L -0.546 0.030
103 253084_at AT4G36260 SRS2, SHI RELATED SEQUENCE 2, STY2, STYLISH 2 -0.541 0.172
104 250635_at AT5G07510 ATGRP-4, ARABIDOPSIS THALIANA GLYCINE-RICH PROTEIN 4, ATGRP14, ARABIDOPSIS THALIANA GLYCINE-RICH PROTEIN 14, GRP-4, GLYCINE-RICH PROTEIN 4, GRP14, glycine-rich protein 14 -0.540 0.025
105 251938_at AT3G53430 [Ribosomal protein L11 family protein] -0.537 0.049
106 255460_at AT4G02800 unknown -0.526 -0.101
107 259947_at AT1G71530 [Protein kinase superfamily protein] -0.525 -0.024
108 249710_at AT5G35630 ATGSL1, GLUTAMINE SYNTHETASE LIKE 1, GLN2, GLUTAMINE SYNTHETASE 2, GS2, glutamine synthetase 2 -0.519 0.226
109 258599_at AT3G04520 THA2, threonine aldolase 2 -0.513 0.158
110 265467_at AT2G37050 [Leucine-rich repeat protein kinase family protein] -0.506 0.049
111 253815_at AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 -0.504 -0.258
112 261025_at AT1G01225 [NC domain-containing protein-related] -0.499 -0.129
113 266131_at AT2G45160 ATHAM1, ARABIDOPSIS THALIANA HAIRY MERISTEM 1, HAM1, HAIRY MERISTEM 1, LOM1, LOST MERISTEMS 1 -0.492 0.158
114 258857_at AT3G02110 scpl25, serine carboxypeptidase-like 25 -0.482 -0.127
115 266956_at AT2G34510 unknown -0.478 0.072
116 245140_at AT2G45420 LBD18, LOB domain-containing protein 18 -0.477 -0.058
117 258551_at AT3G06890 unknown -0.475 0.018
118 247897_at AT5G57810 TET15, tetraspanin15 -0.457 0.049
119 257547_at AT3G13000 unknown -0.446 -0.021
120 254643_at AT4G18820 [AAA-type ATPase family protein] -0.444 0.087
121 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.442 0.685