4.0:Information of module
chalazal seed coat pre-globular
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009805 coumarin biosynthetic process BP 6.988e-06
GO:0009804 coumarin metabolic process BP 1.139e-05
GO:0052543 callose deposition in cell wall BP 1.153e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006534 cysteine metabolic process BP 4.618e-10
GO:0019344 cysteine biosynthetic process BP 4.618e-10
GO:0009070 serine family amino acid biosynthetic pr... BP 1.385e-09
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
chalazal seed coat pre-globular		 Log2 signal ratio
bri1-116
1 262140_at AT1G52470 [alpha/beta-Hydrolases superfamily protein] 1.064 0.021
2 263465_at AT2G31940 unknown 0.937 0.044
3 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.904 0.030
4 259348_at AT3G03770 [Leucine-rich repeat protein kinase family protein] 0.891 0.081
5 258004_at AT3G29020 AtMYB110, myb domain protein 110, MYB110, myb domain protein 110 0.823 0.001
6 256011_at AT1G19230 [Riboflavin synthase-like superfamily protein] 0.822 -0.034
7 265448_at AT2G46590 Dof-type zinc finger DNA-binding family protein 0.807 0.044
8 245473_at AT4G16050 [Aminotransferase-like, plant mobile domain family protein] 0.775 0.053
9 247022_at AT5G67050 [alpha/beta-Hydrolases superfamily protein] 0.770 0.037
10 248254_at AT5G53320 [Leucine-rich repeat protein kinase family protein] 0.768 -0.010
11 252677_at AT3G44320 AtNIT3, NITRILASE 3, NIT3, nitrilase 3 0.759 -0.157
12 247041_at AT5G67180 TOE3, target of early activation tagged (EAT) 3 0.744 -0.224
13 257517_at AT3G16330 unknown 0.734 -0.067
14 254294_at AT4G23070 ATRBL7, RHOMBOID-like protein 7, RBL7, RHOMBOID-like protein 7 0.726 -0.168
15 267192_at AT2G30890 [Cytochrome b561/ferric reductase transmembrane protein family] 0.718 0.027
16 262628_at AT1G06490 ATGSL07, Arabidopsis thaliana glucan synthase-like 7, atgsl7, CalS7, callose synthase 7, gsl07, GSL07, glucan synthase-like 7, GSL7, glucan synthase-like 7 0.713 0.004
17 250004_at AT5G18750 [DNAJ heat shock N-terminal domain-containing protein] 0.711 0.033
18 258326_at AT3G22760 SOL1 0.706 0.120
19 260460_at AT1G68230 [Reticulon family protein] 0.701 -0.120
20 264204_at AT1G22710 ATSUC2, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, SUC2, sucrose-proton symporter 2, SUT1, SUCROSE TRANSPORTER 1 0.701 0.126
21 261893_at AT1G80690 [PPPDE putative thiol peptidase family protein] 0.697 -0.038
22 266216_at AT2G28810 [Dof-type zinc finger DNA-binding family protein] 0.691 0.051
23 259252_at AT3G07610 IBM1, increase in bonsai methylation 1 0.691 0.027
24 256576_at AT3G28210 PMZ, SAP12, STRESS-ASSOCIATED PROTEIN 12 0.689 -0.243
25 266873_at AT2G44740 CYCP4;1, cyclin p4;1 0.643 -0.296
26 267493_at AT2G30400 ATOFP2, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, OFP2, ovate family protein 2 0.638 -0.070
27 250494_at AT5G09740 HAC11, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 11, HAG05, HAG5, HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 5, HAM2, histone acetyltransferase of the MYST family 2 0.613 -0.028
28 246544_at AT5G15100 ATPIN8, PIN-FORMED 8, PIN8, PIN-FORMED 8 0.610 0.080
29 254411_at AT4G21420 [gypsy-like retrotransposon family, has a 6.9e-06 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)] 0.601 0.001
30 250265_at AT5G12900 unknown 0.598 0.068
31 256989_at AT3G28580 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.596 0.052
32 247707_at AT5G59450 [GRAS family transcription factor] 0.594 -0.174
33 262114_at AT1G02860 BAH1, BENZOIC ACID HYPERSENSITIVE 1, NLA, nitrogen limitation adaptation 0.585 -0.105
34 260419_at AT1G69730 [Wall-associated kinase family protein] 0.581 0.153
35 263877_at AT2G21780 unknown 0.568 -0.028
36 250024_at AT5G18270 ANAC087, Arabidopsis NAC domain containing protein 87 0.558 -0.452
37 253246_at AT4G34600 unknown 0.552 -0.028
38 245130_at AT2G45340 [Leucine-rich repeat protein kinase family protein] 0.546 0.381
39 254174_at AT4G24120 ATYSL1, YELLOW STRIPE LIKE 1, YSL1, YELLOW STRIPE like 1 0.545 0.127
40 262782_at AT1G13195 [RING/U-box superfamily protein] 0.543 -0.011
41 252457_at AT3G47180 [RING/U-box superfamily protein] 0.542 -0.027
42 261113_at AT1G75400 [RING/U-box superfamily protein] 0.536 -0.002
43 247200_at AT5G65120 unknown 0.527 -0.117
44 257298_at AT3G28155 unknown 0.521 -0.050
45 255831_at AT2G33350 [CCT motif family protein] 0.520 -0.011
46 261100_at AT1G63020 NRPD1, NRPD1A, nuclear RNA polymerase D1A, POL IVA, NUCLEAR RNA POLYMERASE D 1A, SDE4, SMD2, SILENCING MOVEMENT DEFICIENT 2 0.512 0.002
47 249669_at AT5G35880 unknown 0.507 0.017
48 259674_at AT1G77700 [Pathogenesis-related thaumatin superfamily protein] 0.506 -0.141
49 266242_at AT2G27790 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.503 -0.021
50 246401_at AT1G57560 AtMYB50, myb domain protein 50, MYB50, myb domain protein 50 0.498 -0.132
51 250130_at AT5G16510 RGP5, reversibly glycosylated polypeptide 5, RGP5, reversibly glycosylated protein 5 0.495 0.008
52 266730_at AT2G03110 [RNA binding] 0.487 -0.013
53 248469_at AT5G50820 anac097, NAC domain containing protein 97, NAC097, NAC domain containing protein 97 0.486 -0.083
54 251923_at AT3G53880 AKR4C11, Aldo-keto reductase family 4 member C11 0.485 -0.009
55 251262_at AT3G62080 [SNF7 family protein] 0.484 0.011
56 252248_at AT3G49750 AtRLP44, receptor like protein 44, RLP44, receptor like protein 44 0.481 -0.411
57 254258_at AT4G23410 TET5, tetraspanin5 0.480 -0.044
58 263688_at AT1G26920 unknown 0.478 0.178
59 247640_at AT5G60610 [F-box/RNI-like superfamily protein] 0.464 -0.048
60 266425_at AT2G41300 SSL1, strictosidine synthase-like 1 0.463 -0.236
61 250724_at AT5G06330 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.461 -0.023
62 258377_at AT3G17690 ATCNGC19, CYCLIC NUCLEOTIDE-GATED CHANNEL 19, CNGC19, cyclic nucleotide gated channel 19 0.460 -0.067
63 248821_at AT5G47070 [Protein kinase superfamily protein] 0.459 0.139
64 254888_at AT4G11780 TRM10, TON1 Recruiting Motif 10 0.459 0.018
65 259809_at AT1G49800 unknown -1.330 0.039
66 247450_at AT5G62350 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -1.208 0.040
67 252500_at AT3G46860 [Serine protease inhibitor, potato inhibitor I-type family protein] -1.133 0.067
68 267218_at AT2G02515 unknown -1.103 0.010
69 267169_at AT2G37540 [NAD(P)-binding Rossmann-fold superfamily protein] -1.094 -0.084
70 261848_at AT1G11590 [Plant invertase/pectin methylesterase inhibitor superfamily] -1.086 0.028
71 254295_at AT4G23080 unknown -1.059 0.038
72 251673_at AT3G57240 AtBG3, BG3, beta-1,3-glucanase 3 -1.012 0.124
73 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -1.006 0.114
74 266865_at AT2G29980 AtFAD3, FAD3, fatty acid desaturase 3 -1.001 0.088
75 254122_at AT4G24510 CER2, ECERIFERUM 2, VC-2, VC2 -0.978 -0.060
76 250731_at AT5G06500 AGL96, AGAMOUS-like 96 -0.965 0.041
77 247785_at AT5G58820 [Subtilisin-like serine endopeptidase family protein] -0.953 -0.027
78 249671_at AT5G35900 LBD35, LOB domain-containing protein 35 -0.943 0.044
79 257889_at AT3G17080 [Plant self-incompatibility protein S1 family] -0.939 0.187
80 261420_at AT1G07720 KCS3, 3-ketoacyl-CoA synthase 3 -0.934 -0.280
81 264390_at AT1G11950 [Transcription factor jumonji (jmjC) domain-containing protein] -0.931 0.023
82 254489_at AT4G20800 [FAD-binding Berberine family protein] -0.929 0.118
83 255956_at AT1G22015 DD46 -0.920 0.088
84 247215_at AT5G64905 PROPEP3, elicitor peptide 3 precursor -0.916 -0.155
85 259786_at AT1G29660 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.893 -0.280
86 259466_at AT1G19050 ARR7, response regulator 7 -0.892 -0.085
87 255019_at AT4G10210 unknown -0.888 -0.007
88 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.883 -0.020
89 246890_at AT5G25410 unknown -0.873 0.112
90 247526_at AT5G61470 [C2H2-like zinc finger protein] -0.873 0.005
91 261727_at AT1G76090 SMT3, sterol methyltransferase 3 -0.849 -0.251
92 251627_at AT3G57270 BG1, beta-1,3-glucanase 1 -0.847 -0.064
93 255896_at AT1G17800 AtENODL22, ENODL22, early nodulin-like protein 22 -0.847 0.006
94 251899_at AT3G54400 [Eukaryotic aspartyl protease family protein] -0.837 -0.068
95 250859_at AT5G04660 CYP77A4, cytochrome P450, family 77, subfamily A, polypeptide 4 -0.831 0.001
96 255357_at AT4G03930 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.828 0.040
97 265590_at AT2G20160 ASK17, ARABIDOPSIS SKP1-LIKE 17, MEO, MEIDOS -0.822 -0.055
98 252886_at AT4G39350 ATCESA2, ATH-A, CESA2, cellulose synthase A2 -0.817 -0.108
99 267392_at AT2G44490 BGLU26, BETA GLUCOSIDASE 26, PEN2, PENETRATION 2 -0.812 -0.105
100 263431_at AT2G22170 PLAT2, PLAT domain protein 2 -0.807 -0.110
101 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 -0.806 -0.300
102 259813_at AT1G49860 ATGSTF14, glutathione S-transferase (class phi) 14, GSTF14, glutathione S-transferase (class phi) 14 -0.800 0.077
103 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH -0.783 0.393
104 261203_at AT1G12845 unknown -0.779 -0.228
105 253459_at AT4G32080 unknown -0.775 -0.048
106 258016_at AT3G19350 MPC, maternally expressed pab C-terminal -0.773 0.050
107 256310_at AT1G30360 ERD4, early-responsive to dehydration 4 -0.773 -0.047
108 249500_at AT5G39260 ATEXP21, ATEXPA21, expansin A21, ATHEXP ALPHA 1.20, EXP21, EXPANSIN 21, EXPA21, expansin A21 -0.771 0.048
109 251012_at AT5G02580 unknown -0.768 0.016
110 246682_at AT5G33290 XGD1, xylogalacturonan deficient 1 -0.765 -0.126
111 262797_at AT1G20840 AtTMT1, TMT1, tonoplast monosaccharide transporter1 -0.750 -0.011
112 258744_at AT3G05830 unknown -0.747 -0.014
113 267267_at AT2G02580 CYP71B9, cytochrome P450, family 71, subfamily B, polypeptide 9 -0.730 0.121
114 258895_at AT3G05600 [alpha/beta-Hydrolases superfamily protein] -0.728 0.459
115 263979_at AT2G42840 PDF1, protodermal factor 1 -0.720 -0.101
116 247320_at AT5G64040 PSAN -0.719 0.228
117 246624_at AT1G48910 YUC10, YUCCA 10 -0.714 0.138
118 256489_at AT1G31550 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.692 0.045
119 255954_at AT1G22090 emb2204, embryo defective 2204 -0.686 -0.006
120 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 -0.666 -0.110
121 256309_at AT1G30380 PSAK, photosystem I subunit K -0.665 0.330
122 267198_at AT2G30810 [Gibberellin-regulated family protein] -0.662 0.038
123 248202_at AT5G54220 [Cysteine-rich protein] -0.660 0.085
124 262455_at AT1G11310 ATMLO2, MILDEW RESISTANCE LOCUS O 2, MLO2, MILDEW RESISTANCE LOCUS O 2, PMR2, POWDERY MILDEW RESISTANT 2 -0.660 -0.041
125 249450_at AT5G39440 SnRK1.3, SNF1-related protein kinase 1.3 -0.653 -0.089
126 255644_at AT4G00870 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.651 -0.018
127 257769_at AT3G23050 AXR2, AUXIN RESISTANT 2, IAA7, indole-3-acetic acid 7 -0.650 -0.092