4.0:Information of module
Col whole leaf 1dpi
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009240 isopentenyl diphosphate biosynthetic pro... BP 1.635e-05
GO:0019288 isopentenyl diphosphate biosynthetic pro... BP 1.635e-05
GO:0046490 isopentenyl diphosphate metabolic proces... BP 1.635e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006612 protein targeting to membrane BP 2.031e-06
GO:0043067 regulation of programmed cell death BP 2.755e-06
GO:0072657 protein localization to membrane BP 3.001e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col whole leaf 1dpi		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 0.310 0.605
2 265119_at AT1G62570 FMO GS-OX4, flavin-monooxygenase glucosinolate S-oxygenase 4 0.220 0.343
3 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 0.212 -0.114
4 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 0.177 0.919
5 264638_at AT1G65480 FT, FLOWERING LOCUS T, RSB8, REDUCED STEM BRANCHING 8 0.168 -1.484
6 254323_at AT4G22620 SAUR34, SMALL AUXIN UPREGULATED RNA 34 0.161 -0.957
7 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.147 0.968
8 261924_at AT1G22550 [Major facilitator superfamily protein] 0.145 0.399
9 245912_at AT5G19600 SULTR3;5, sulfate transporter 3;5 0.132 -0.254
10 251317_at AT3G61490 [Pectin lyase-like superfamily protein] 0.131 0.427
11 263436_at AT2G28690 unknown 0.116 0.116
12 247406_at AT5G62920 ARR6, response regulator 6 0.116 -0.966
13 247511_at AT5G62040 BFT, brother of FT and TFL1 0.114 -0.731
14 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.113 -1.064
15 250881_at AT5G04080 unknown 0.111 -0.791
16 254993_at AT4G10730 [Protein kinase superfamily protein] 0.110 0.242
17 257024_at AT3G19100 [Protein kinase superfamily protein] 0.108 0.701
18 261247_at AT1G20070 unknown 0.100 -0.094
19 263465_at AT2G31940 unknown 0.096 -0.484
20 264053_at AT2G22560 NET2D, Networked 2D 0.096 0.338
21 247640_at AT5G60610 [F-box/RNI-like superfamily protein] 0.095 -0.476
22 255921_at AT1G22240 APUM8, pumilio 8, PUM8, pumilio 8 0.094 -0.564
23 247351_at AT5G63790 ANAC102, NAC domain containing protein 102, NAC102, NAC domain containing protein 102 0.093 -0.564
24 255289_at AT4G04690 [F-box and associated interaction domains-containing protein] 0.093 -0.104
25 263179_at AT1G05710 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.091 0.334
26 265634_at AT2G25530 [AFG1-like ATPase family protein] 0.090 0.667
27 263124_at AT1G78480 [Prenyltransferase family protein] 0.090 -0.060
28 264741_at AT1G62290 [Saposin-like aspartyl protease family protein] 0.090 0.970
29 252005_at AT3G52810 ATPAP21, PURPLE ACID PHOSPHATASE 21, PAP21, purple acid phosphatase 21 0.090 -0.800
30 254939_at AT4G10800 unknown 0.089 0.361
31 245724_at AT1G73390 [Endosomal targeting BRO1-like domain-containing protein] 0.088 0.013
32 254304_at AT4G22270 ATMRB1, ARABIDOPSIS MEMBRANE RELATED BIGGER1, MRB1, MEMBRANE RELATED BIGGER1 0.085 -1.219
33 258603_at AT3G02990 ATHSFA1E, heat shock transcription factor A1E, HSFA1E, heat shock transcription factor A1E 0.085 0.463
34 247965_at AT5G56540 AGP14, arabinogalactan protein 14, ATAGP14 0.084 0.589
35 251825_at AT3G55100 ABCG17, ATP-binding cassette G17 0.084 0.010
36 260080_at AT1G78160 APUM7, pumilio 7, PUM7, pumilio 7 0.083 -0.022
37 264907_at AT2G17280 [Phosphoglycerate mutase family protein] 0.083 0.676
38 264186_at AT1G54570 PES1, phytyl ester synthase 1 0.082 -0.125
39 257956_at AT3G25400 unknown 0.082 0.595
40 258938_at AT3G10080 [RmlC-like cupins superfamily protein] 0.080 0.511
41 256304_at AT1G69523 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.080 0.127
42 245680_at AT1G56570 PGN, PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl 0.079 -0.491
43 246492_at AT5G16140 [Peptidyl-tRNA hydrolase family protein] 0.079 0.995
44 267327_at AT2G19410 [U-box domain-containing protein kinase family protein] 0.078 0.047
45 259704_at AT1G77680 [Ribonuclease II/R family protein] 0.078 0.119
46 245467_at AT4G16610 [C2H2-like zinc finger protein] 0.076 0.623
47 262478_at AT1G11170 unknown 0.076 -0.268
48 265484_at AT2G15820 OTP51, ORGANELLE TRANSCRIPT PROCESSING 51 0.076 -0.115
49 245225_at AT3G29800 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.075 0.370
50 265544_at AT2G28260 ATCNGC15, cyclic nucleotide-gated channel 15, CNGC15, cyclic nucleotide-gated channel 15 0.075 -0.513
51 265928_at AT2G18580 [hAT-like transposase family (hobo/Ac/Tam3), has a 3.7e-98 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)] 0.074 0.213
52 257254_at AT3G21950 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.074 -0.844
53 261171_at AT1G04880 [HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain] 0.072 -0.123
54 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 -0.284 0.539
55 248164_at AT5G54490 PBP1, pinoid-binding protein 1 -0.263 -0.355
56 267546_at AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 -0.259 0.147
57 264774_at AT1G22890 unknown -0.225 -0.617
58 247314_at AT5G64000 ATSAL2, SAL2 -0.220 -0.093
59 259012_at AT3G07360 ATPUB9, ARABIDOPSIS THALIANA PLANT U-BOX 9, PUB9, plant U-box 9 -0.213 -0.097
60 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 -0.207 0.649
61 266658_at AT2G25735 unknown -0.192 -0.331
62 247866_at AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 -0.186 -0.770
63 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G -0.178 -0.742
64 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 -0.177 0.469
65 267289_at AT2G23770 LYK4, LysM-containing receptor-like kinase 4 -0.175 0.131
66 259272_at AT3G01290 AtHIR2, HIR2, hypersensitive induced reaction 2 -0.175 0.068
67 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 -0.174 -0.992
68 266447_at AT2G43290 MSS3, multicopy suppressors of snf4 deficiency in yeast 3 -0.172 0.012
69 259211_at AT3G09020 [alpha 1,4-glycosyltransferase family protein] -0.168 -1.607
70 263391_at AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C -0.157 -0.412
71 254660_at AT4G18250 [receptor serine/threonine kinase, putative] -0.157 -0.123
72 263800_at AT2G24600 [Ankyrin repeat family protein] -0.156 0.717
73 261375_at AT1G53160 FTM6, FLORAL TRANSITION AT THE MERISTEM6, SPL4, squamosa promoter binding protein-like 4 -0.155 -0.697
74 250603_at AT5G07820 [Plant calmodulin-binding protein-related] -0.151 0.264
75 260472_at AT1G10990 unknown -0.146 -0.005
76 248646_at AT5G49100 unknown -0.143 0.166
77 247685_at AT5G59680 [Leucine-rich repeat protein kinase family protein] -0.141 -0.322
78 250936_at AT5G03120 unknown -0.140 -0.047
79 263182_at AT1G05575 unknown -0.136 0.482
80 256275_at AT3G12110 ACT11, actin-11 -0.135 0.535
81 265893_at AT2G15042 [Leucine-rich repeat (LRR) family protein] -0.131 -0.436
82 267385_at AT2G44380 [Cysteine/Histidine-rich C1 domain family protein] -0.131 -1.057
83 259841_at AT1G52200 [PLAC8 family protein] -0.130 0.825
84 249754_at AT5G24530 DMR6, DOWNY MILDEW RESISTANT 6 -0.128 -0.472
85 257139_at AT3G28890 AtRLP43, receptor like protein 43, RLP43, receptor like protein 43 -0.126 -0.539
86 248179_at AT5G54380 THE1, THESEUS1 -0.126 0.187
87 266371_at AT2G41410 [Calcium-binding EF-hand family protein] -0.124 0.594
88 252417_at AT3G47480 [Calcium-binding EF-hand family protein] -0.124 0.062
89 261949_at AT1G64670 BDG1, BODYGUARD1, CED1, 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1 -0.123 0.858
90 263914_at AT2G36400 AtGRF3, growth-regulating factor 3, GRF3, growth-regulating factor 3 -0.121 1.145
91 247071_at AT5G66640 DAR3, DA1-related protein 3 -0.121 -0.643
92 261027_at AT1G01340 ACBK1, ATCNGC10, cyclic nucleotide gated channel 10, CNGC10, cyclic nucleotide gated channel 10 -0.118 -0.880
93 260143_at AT1G71880 ATSUC1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, SUC1, sucrose-proton symporter 1 -0.117 0.327
94 261873_at AT1G11350 CBRLK1, CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, RKS2, SD1-13, S-domain-1 13 -0.116 0.137
95 255912_at AT1G66960 LUP5 -0.115 -0.199
96 253776_at AT4G28390 AAC3, ADP/ATP carrier 3, ATAAC3 -0.113 0.257
97 267083_at AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 -0.112 1.050
98 257206_at AT3G16530 [Legume lectin family protein] -0.111 0.716
99 261308_at AT1G48480 RKL1, receptor-like kinase 1 -0.111 -0.225
100 249409_at AT5G40340 [Tudor/PWWP/MBT superfamily protein] -0.110 0.173
101 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 -0.110 -0.668
102 250435_at AT5G10380 ATRING1, RING1 -0.109 -0.571
103 267423_at AT2G35060 KUP11, K+ uptake permease 11 -0.108 0.284
104 264574_at AT1G05300 ZIP5, zinc transporter 5 precursor -0.108 -0.571
105 260239_at AT1G74360 [Leucine-rich repeat protein kinase family protein] -0.107 -0.536