4.0:Information of module
Col whole leaf 1dpi
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009240 isopentenyl diphosphate biosynthetic pro... BP 1.635e-05
GO:0019288 isopentenyl diphosphate biosynthetic pro... BP 1.635e-05
GO:0046490 isopentenyl diphosphate metabolic proces... BP 1.635e-05
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006612 protein targeting to membrane BP 2.031e-06
GO:0043067 regulation of programmed cell death BP 2.755e-06
GO:0072657 protein localization to membrane BP 3.001e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col whole leaf 1dpi		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 0.310 -0.209
2 265119_at AT1G62570 FMO GS-OX4, flavin-monooxygenase glucosinolate S-oxygenase 4 0.220 0.109
3 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 0.212 0.040
4 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 0.177 0.049
5 264638_at AT1G65480 FT, FLOWERING LOCUS T, RSB8, REDUCED STEM BRANCHING 8 0.168 -0.032
6 254323_at AT4G22620 SAUR34, SMALL AUXIN UPREGULATED RNA 34 0.161 -0.010
7 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.147 0.047
8 261924_at AT1G22550 [Major facilitator superfamily protein] 0.145 0.054
9 245912_at AT5G19600 SULTR3;5, sulfate transporter 3;5 0.132 0.056
10 251317_at AT3G61490 [Pectin lyase-like superfamily protein] 0.131 -0.009
11 263436_at AT2G28690 unknown 0.116 -0.007
12 247406_at AT5G62920 ARR6, response regulator 6 0.116 -0.079
13 247511_at AT5G62040 BFT, brother of FT and TFL1 0.114 -0.040
14 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.113 0.124
15 250881_at AT5G04080 unknown 0.111 0.074
16 254993_at AT4G10730 [Protein kinase superfamily protein] 0.110 -0.078
17 257024_at AT3G19100 [Protein kinase superfamily protein] 0.108 0.005
18 261247_at AT1G20070 unknown 0.100 -0.052
19 263465_at AT2G31940 unknown 0.096 -0.083
20 264053_at AT2G22560 NET2D, Networked 2D 0.096 0.009
21 247640_at AT5G60610 [F-box/RNI-like superfamily protein] 0.095 -0.838
22 255921_at AT1G22240 APUM8, pumilio 8, PUM8, pumilio 8 0.094 0.069
23 247351_at AT5G63790 ANAC102, NAC domain containing protein 102, NAC102, NAC domain containing protein 102 0.093 0.069
24 255289_at AT4G04690 [F-box and associated interaction domains-containing protein] 0.093 -0.020
25 263179_at AT1G05710 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.091 -0.275
26 265634_at AT2G25530 [AFG1-like ATPase family protein] 0.090 -0.026
27 263124_at AT1G78480 [Prenyltransferase family protein] 0.090 0.280
28 264741_at AT1G62290 [Saposin-like aspartyl protease family protein] 0.090 0.023
29 252005_at AT3G52810 ATPAP21, PURPLE ACID PHOSPHATASE 21, PAP21, purple acid phosphatase 21 0.090 0.163
30 254939_at AT4G10800 unknown 0.089 0.037
31 245724_at AT1G73390 [Endosomal targeting BRO1-like domain-containing protein] 0.088 -0.056
32 254304_at AT4G22270 ATMRB1, ARABIDOPSIS MEMBRANE RELATED BIGGER1, MRB1, MEMBRANE RELATED BIGGER1 0.085 -0.028
33 258603_at AT3G02990 ATHSFA1E, heat shock transcription factor A1E, HSFA1E, heat shock transcription factor A1E 0.085 0.034
34 247965_at AT5G56540 AGP14, arabinogalactan protein 14, ATAGP14 0.084 -0.043
35 251825_at AT3G55100 ABCG17, ATP-binding cassette G17 0.084 -0.040
36 260080_at AT1G78160 APUM7, pumilio 7, PUM7, pumilio 7 0.083 0.027
37 264907_at AT2G17280 [Phosphoglycerate mutase family protein] 0.083 0.057
38 264186_at AT1G54570 PES1, phytyl ester synthase 1 0.082 -0.033
39 257956_at AT3G25400 unknown 0.082 0.104
40 258938_at AT3G10080 [RmlC-like cupins superfamily protein] 0.080 0.094
41 256304_at AT1G69523 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.080 -0.062
42 245680_at AT1G56570 PGN, PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl 0.079 -0.036
43 246492_at AT5G16140 [Peptidyl-tRNA hydrolase family protein] 0.079 0.145
44 267327_at AT2G19410 [U-box domain-containing protein kinase family protein] 0.078 0.160
45 259704_at AT1G77680 [Ribonuclease II/R family protein] 0.078 -0.083
46 245467_at AT4G16610 [C2H2-like zinc finger protein] 0.076 -0.015
47 262478_at AT1G11170 unknown 0.076 0.316
48 265484_at AT2G15820 OTP51, ORGANELLE TRANSCRIPT PROCESSING 51 0.076 0.030
49 245225_at AT3G29800 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.075 0.059
50 265544_at AT2G28260 ATCNGC15, cyclic nucleotide-gated channel 15, CNGC15, cyclic nucleotide-gated channel 15 0.075 0.033
51 265928_at AT2G18580 [hAT-like transposase family (hobo/Ac/Tam3), has a 3.7e-98 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)] 0.074 -0.062
52 257254_at AT3G21950 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.074 -0.006
53 261171_at AT1G04880 [HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain] 0.072 0.094
54 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 -0.284 -0.073
55 248164_at AT5G54490 PBP1, pinoid-binding protein 1 -0.263 0.073
56 267546_at AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 -0.259 -0.019
57 264774_at AT1G22890 unknown -0.225 -0.122
58 247314_at AT5G64000 ATSAL2, SAL2 -0.220 -0.058
59 259012_at AT3G07360 ATPUB9, ARABIDOPSIS THALIANA PLANT U-BOX 9, PUB9, plant U-box 9 -0.213 0.116
60 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 -0.207 0.088
61 266658_at AT2G25735 unknown -0.192 0.003
62 247866_at AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 -0.186 0.084
63 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G -0.178 0.132
64 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 -0.177 -0.156
65 267289_at AT2G23770 LYK4, LysM-containing receptor-like kinase 4 -0.175 0.003
66 259272_at AT3G01290 AtHIR2, HIR2, hypersensitive induced reaction 2 -0.175 -0.156
67 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 -0.174 0.146
68 266447_at AT2G43290 MSS3, multicopy suppressors of snf4 deficiency in yeast 3 -0.172 -0.109
69 259211_at AT3G09020 [alpha 1,4-glycosyltransferase family protein] -0.168 -0.073
70 263391_at AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C -0.157 0.092
71 254660_at AT4G18250 [receptor serine/threonine kinase, putative] -0.157 0.004
72 263800_at AT2G24600 [Ankyrin repeat family protein] -0.156 0.043
73 261375_at AT1G53160 FTM6, FLORAL TRANSITION AT THE MERISTEM6, SPL4, squamosa promoter binding protein-like 4 -0.155 0.047
74 250603_at AT5G07820 [Plant calmodulin-binding protein-related] -0.151 0.129
75 260472_at AT1G10990 unknown -0.146 0.059
76 248646_at AT5G49100 unknown -0.143 -0.283
77 247685_at AT5G59680 [Leucine-rich repeat protein kinase family protein] -0.141 -0.055
78 250936_at AT5G03120 unknown -0.140 0.081
79 263182_at AT1G05575 unknown -0.136 -0.034
80 256275_at AT3G12110 ACT11, actin-11 -0.135 -0.191
81 265893_at AT2G15042 [Leucine-rich repeat (LRR) family protein] -0.131 0.009
82 267385_at AT2G44380 [Cysteine/Histidine-rich C1 domain family protein] -0.131 0.104
83 259841_at AT1G52200 [PLAC8 family protein] -0.130 0.166
84 249754_at AT5G24530 DMR6, DOWNY MILDEW RESISTANT 6 -0.128 0.023
85 257139_at AT3G28890 AtRLP43, receptor like protein 43, RLP43, receptor like protein 43 -0.126 -0.010
86 248179_at AT5G54380 THE1, THESEUS1 -0.126 0.094
87 266371_at AT2G41410 [Calcium-binding EF-hand family protein] -0.124 -0.175
88 252417_at AT3G47480 [Calcium-binding EF-hand family protein] -0.124 0.075
89 261949_at AT1G64670 BDG1, BODYGUARD1, CED1, 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1 -0.123 0.253
90 263914_at AT2G36400 AtGRF3, growth-regulating factor 3, GRF3, growth-regulating factor 3 -0.121 -0.025
91 247071_at AT5G66640 DAR3, DA1-related protein 3 -0.121 -0.150
92 261027_at AT1G01340 ACBK1, ATCNGC10, cyclic nucleotide gated channel 10, CNGC10, cyclic nucleotide gated channel 10 -0.118 -0.024
93 260143_at AT1G71880 ATSUC1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, SUC1, sucrose-proton symporter 1 -0.117 0.022
94 261873_at AT1G11350 CBRLK1, CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, RKS2, SD1-13, S-domain-1 13 -0.116 0.056
95 255912_at AT1G66960 LUP5 -0.115 -0.247
96 253776_at AT4G28390 AAC3, ADP/ATP carrier 3, ATAAC3 -0.113 0.151
97 267083_at AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 -0.112 0.187
98 257206_at AT3G16530 [Legume lectin family protein] -0.111 0.098
99 261308_at AT1G48480 RKL1, receptor-like kinase 1 -0.111 0.007
100 249409_at AT5G40340 [Tudor/PWWP/MBT superfamily protein] -0.110 0.253
101 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 -0.110 -0.216
102 250435_at AT5G10380 ATRING1, RING1 -0.109 -0.005
103 267423_at AT2G35060 KUP11, K+ uptake permease 11 -0.108 0.058
104 264574_at AT1G05300 ZIP5, zinc transporter 5 precursor -0.108 -0.178
105 260239_at AT1G74360 [Leucine-rich repeat protein kinase family protein] -0.107 0.049