4.0:Information of module
empty vector IAA Treated
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010583 response to cyclopentenone BP 2.631e-15
GO:0009733 response to auxin BP 7.392e-15
GO:0009725 response to hormone BP 6.105e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001101 response to acid chemical BP 7.168e-08
GO:0010035 response to inorganic substance BP 1.778e-06
GO:0071229 cellular response to acid chemical BP 2.178e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
empty vector IAA Treated		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 253791_at AT4G28640 IAA11, indole-3-acetic acid inducible 11 1.056 0.660
2 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 1.033 -0.734
3 251246_at AT3G62100 IAA30, indole-3-acetic acid inducible 30 0.871 -0.125
4 245076_at AT2G23170 GH3.3 0.854 -0.319
5 266346_at AT2G01430 ATHB-17, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, ATHB17, homeobox-leucine zipper protein 17, HB17, homeobox-leucine zipper protein 17 0.739 -0.178
6 266974_at AT2G39370 MAKR4, MEMBRANE-ASSOCIATED KINASE REGULATOR 4 0.683 -0.692
7 259735_at AT1G64405 unknown 0.651 -0.501
8 248801_at AT5G47370 HAT2 0.649 -0.051
9 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 0.637 -0.175
10 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 0.627 -0.905
11 254860_at AT4G12110 ATSMO1-1, SMO1-1, sterol-4alpha-methyl oxidase 1-1 0.616 0.017
12 251565_at AT3G58190 ASL16, ASYMMETRIC LEAVES 2-LIKE 16, LBD29, lateral organ boundaries-domain 29 0.570 -0.543
13 247869_at AT5G57520 ATZFP2, ZINC FINGER PROTEIN 2, ZFP2, zinc finger protein 2 0.559 -0.402
14 259845_at AT1G73590 ATPIN1, ARABIDOPSIS THALIANA PIN-FORMED 1, PIN1, PIN-FORMED 1 0.555 -0.067
15 246401_at AT1G57560 AtMYB50, myb domain protein 50, MYB50, myb domain protein 50 0.521 0.009
16 259736_at AT1G64390 AtGH9C2, glycosyl hydrolase 9C2, GH9C2, glycosyl hydrolase 9C2 0.515 -0.451
17 251062_at AT5G01840 ATOFP1, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, OFP1, ovate family protein 1 0.508 -0.647
18 245362_at AT4G17460 HAT1, JAB, JAIBA 0.499 -0.707
19 252184_at AT3G50660 AtDWF4, CLM, CLOMAZONE-RESISTANT, CYP90B1, CYTOCHROME P450 90B1, DWF4, DWARF 4, PSC1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, SAV1, SHADE AVOIDANCE 1, SNP2, SUPPRESSOR OF NPH4 2 0.499 0.756
20 255934_at AT1G12740 CYP87A2, cytochrome P450, family 87, subfamily A, polypeptide 2 0.479 -0.073
21 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.479 -0.398
22 266663_at AT2G25790 SKM1, STERILITY-REGULATING KINASE MEMBER 1 0.460 -0.399
23 253092_at AT4G37380 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.445 -0.132
24 266611_at AT2G14960 GH3.1 0.442 -0.688
25 263737_at AT1G60010 unknown 0.434 -0.108
26 255788_at AT2G33310 IAA13, auxin-induced protein 13 0.427 0.159
27 249771_at AT5G24080 [Protein kinase superfamily protein] 0.405 -0.269
28 251261_at AT3G62110 [Pectin lyase-like superfamily protein] 0.393 -0.142
29 247903_at AT5G57340 unknown 0.360 -1.186
30 265856_at AT2G42430 ASL18, ASYMMETRIC LEAVES2-LIKE 18, LBD16, lateral organ boundaries-domain 16 0.354 0.058
31 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 0.347 -0.270
32 257026_at AT3G19200 unknown 0.345 -0.152
33 262045_at AT1G80240 DGR1, DUF642 L-GalL responsive gene 1 0.334 -0.847
34 261952_at AT1G64430 [Pentatricopeptide repeat (PPR) superfamily protein] 0.333 -0.211
35 249137_at AT5G43140 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.322 0.922
36 266737_at AT2G47140 AtSDR5, SDR5, short-chain dehydrogenase reductase 5 0.316 0.351
37 247770_at AT5G58930 unknown 0.316 1.301
38 262191_at AT1G77820 [pseudogene] 0.313 -0.606
39 255793_at AT2G33250 unknown 0.309 0.452
40 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 0.309 -0.217
41 253012_at AT4G37900 unknown 0.306 -0.782
42 257672_at AT3G20300 unknown 0.297 -0.316
43 249134_at AT5G43150 unknown 0.295 0.564
44 247794_at AT5G58670 ATPLC, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, ATPLC1, phospholipase C1, PLC1, phospholipase C 1, PLC1, phospholipase C1 0.262 -0.597
45 249109_at AT5G43700 ATAUX2-11, AUXIN INDUCIBLE 2-11, IAA4, indole-3-acetic acid inducible 4 0.260 0.556
46 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 0.258 0.757
47 266475_at AT2G31100 [alpha/beta-Hydrolases superfamily protein] 0.252 -0.936
48 255695_at AT4G00080 UNE11, unfertilized embryo sac 11 0.251 -0.139
49 249083_at AT5G44140 ATPHB7, prohibitin 7, PHB7, prohibitin 7 0.241 -0.624
50 256011_at AT1G19230 [Riboflavin synthase-like superfamily protein] 0.240 -0.932
51 248164_at AT5G54490 PBP1, pinoid-binding protein 1 0.239 -0.355
52 257244_at AT3G24240 [Leucine-rich repeat receptor-like protein kinase family protein] 0.238 1.175
53 249384_at AT5G39890 unknown -0.597 0.751
54 266454_at AT2G22750 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.589 -0.765
55 247024_at AT5G66985 unknown -0.541 1.281
56 251481_at AT3G59730 LecRK-V.6, L-type lectin receptor kinase V.6 -0.450 -0.980
57 251207_at AT3G63050 unknown -0.442 -0.422
58 260092_at AT1G73280 scpl3, serine carboxypeptidase-like 3 -0.435 -1.015
59 247444_at AT5G62630 HIPL2, hipl2 protein precursor -0.359 0.217
60 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] -0.332 0.231
61 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] -0.329 1.278
62 252232_at AT3G49760 AtbZIP5, basic leucine-zipper 5, bZIP5, basic leucine-zipper 5 -0.326 0.190
63 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.313 0.747
64 251213_at AT3G62490 ASY2 -0.306 -0.633
65 261956_at AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] -0.305 -1.093
66 245423_at AT4G17483 [alpha/beta-Hydrolases superfamily protein] -0.300 -1.098
67 259045_at AT3G03410 [EF hand calcium-binding protein family] -0.299 -0.729
68 259435_at AT1G01450 [Protein kinase superfamily protein] -0.294 -0.872
69 265204_at AT2G36650 unknown -0.272 0.070
70 251760_at AT3G55605 [Mitochondrial glycoprotein family protein] -0.270 1.423
71 252097_at AT3G51090 unknown -0.262 -0.109
72 248728_at AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 -0.256 -0.483
73 251129_at AT5G01150 unknown -0.254 -1.121
74 257503_at AT1G72530 RIP7, RNA edi7ting-Interacting Protein -0.251 -0.470
75 263791_at AT2G24520 AHA5, H(+)-ATPase 5, HA5, H(+)-ATPase 5 -0.251 -0.557
76 253298_at AT4G33560 [Wound-responsive family protein] -0.242 0.411
77 262671_at AT1G76040 CPK29, calcium-dependent protein kinase 29 -0.240 -1.299
78 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 -0.231 -0.915
79 248729_at AT5G48010 AtTHAS1, Arabidopsis thaliana thalianol synthase 1, THAS, THALIANOL SYNTHASE, THAS1, thalianol synthase 1 -0.230 -0.725
80 245492_at AT4G16340 SPK1, SPIKE1 -0.230 -0.071
81 253774_at AT4G28530 anac074, NAC domain containing protein 74, NAC074, NAC domain containing protein 74 -0.229 -0.359
82 246683_at AT5G33300 [chromosome-associated kinesin-related] -0.229 0.659
83 245511_at AT4G15755 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.225 -1.066
84 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 -0.225 1.428
85 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] -0.223 -1.093
86 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] -0.222 0.230
87 251865_at AT3G54930 [Protein phosphatase 2A regulatory B subunit family protein] -0.219 0.112
88 252488_at AT3G46700 [UDP-Glycosyltransferase superfamily protein] -0.218 -0.159
89 253674_at AT4G29540 AtLpxA, LpxA -0.213 0.388
90 249099_at AT5G43550 [F-box associated ubiquitination effector family protein] -0.212 -1.299
91 260637_at AT1G62380 ACO2, ACC oxidase 2, ATACO2 -0.208 0.994
92 247945_at AT5G57150 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.203 0.319
93 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.203 0.586
94 255178_at AT4G08050 [gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] -0.203 -0.668
95 257580_at AT3G06210 [ARM repeat superfamily protein] -0.202 -0.334
96 264025_at AT2G21050 LAX2, like AUXIN RESISTANT 2 -0.201 -0.122
97 246817_at AT5G27240 [DNAJ heat shock N-terminal domain-containing protein] -0.197 -0.373
98 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 -0.196 -0.912
99 254003_at AT4G26290 unknown -0.190 -0.941
100 266246_at AT2G27690 CYP94C1, cytochrome P450, family 94, subfamily C, polypeptide 1 -0.187 0.332
101 253666_at AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 -0.186 0.171
102 246784_at AT5G27430 [Signal peptidase subunit] -0.186 1.424
103 250793_at AT5G05600 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.185 -0.405