4.0:Information of module
empty vector IAA Treated
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010583 response to cyclopentenone BP 2.631e-15
GO:0009733 response to auxin BP 7.392e-15
GO:0009725 response to hormone BP 6.105e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001101 response to acid chemical BP 7.168e-08
GO:0010035 response to inorganic substance BP 1.778e-06
GO:0071229 cellular response to acid chemical BP 2.178e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
empty vector IAA Treated		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 253791_at AT4G28640 IAA11, indole-3-acetic acid inducible 11 1.056 -0.048
2 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 1.033 -0.073
3 251246_at AT3G62100 IAA30, indole-3-acetic acid inducible 30 0.871 -0.018
4 245076_at AT2G23170 GH3.3 0.854 0.091
5 266346_at AT2G01430 ATHB-17, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, ATHB17, homeobox-leucine zipper protein 17, HB17, homeobox-leucine zipper protein 17 0.739 0.026
6 266974_at AT2G39370 MAKR4, MEMBRANE-ASSOCIATED KINASE REGULATOR 4 0.683 -0.151
7 259735_at AT1G64405 unknown 0.651 -0.074
8 248801_at AT5G47370 HAT2 0.649 0.010
9 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 0.637 -0.240
10 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 0.627 -0.032
11 254860_at AT4G12110 ATSMO1-1, SMO1-1, sterol-4alpha-methyl oxidase 1-1 0.616 0.158
12 251565_at AT3G58190 ASL16, ASYMMETRIC LEAVES 2-LIKE 16, LBD29, lateral organ boundaries-domain 29 0.570 0.134
13 247869_at AT5G57520 ATZFP2, ZINC FINGER PROTEIN 2, ZFP2, zinc finger protein 2 0.559 -0.071
14 259845_at AT1G73590 ATPIN1, ARABIDOPSIS THALIANA PIN-FORMED 1, PIN1, PIN-FORMED 1 0.555 0.156
15 246401_at AT1G57560 AtMYB50, myb domain protein 50, MYB50, myb domain protein 50 0.521 0.072
16 259736_at AT1G64390 AtGH9C2, glycosyl hydrolase 9C2, GH9C2, glycosyl hydrolase 9C2 0.515 0.095
17 251062_at AT5G01840 ATOFP1, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, OFP1, ovate family protein 1 0.508 -0.092
18 245362_at AT4G17460 HAT1, JAB, JAIBA 0.499 0.024
19 252184_at AT3G50660 AtDWF4, CLM, CLOMAZONE-RESISTANT, CYP90B1, CYTOCHROME P450 90B1, DWF4, DWARF 4, PSC1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, SAV1, SHADE AVOIDANCE 1, SNP2, SUPPRESSOR OF NPH4 2 0.499 -0.053
20 255934_at AT1G12740 CYP87A2, cytochrome P450, family 87, subfamily A, polypeptide 2 0.479 0.110
21 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.479 -0.174
22 266663_at AT2G25790 SKM1, STERILITY-REGULATING KINASE MEMBER 1 0.460 0.030
23 253092_at AT4G37380 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.445 -0.213
24 266611_at AT2G14960 GH3.1 0.442 0.083
25 263737_at AT1G60010 unknown 0.434 0.045
26 255788_at AT2G33310 IAA13, auxin-induced protein 13 0.427 0.123
27 249771_at AT5G24080 [Protein kinase superfamily protein] 0.405 0.045
28 251261_at AT3G62110 [Pectin lyase-like superfamily protein] 0.393 -0.073
29 247903_at AT5G57340 unknown 0.360 -0.086
30 265856_at AT2G42430 ASL18, ASYMMETRIC LEAVES2-LIKE 18, LBD16, lateral organ boundaries-domain 16 0.354 -0.052
31 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 0.347 -0.118
32 257026_at AT3G19200 unknown 0.345 0.035
33 262045_at AT1G80240 DGR1, DUF642 L-GalL responsive gene 1 0.334 -0.063
34 261952_at AT1G64430 [Pentatricopeptide repeat (PPR) superfamily protein] 0.333 -0.107
35 249137_at AT5G43140 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.322 0.012
36 266737_at AT2G47140 AtSDR5, SDR5, short-chain dehydrogenase reductase 5 0.316 0.067
37 247770_at AT5G58930 unknown 0.316 0.067
38 262191_at AT1G77820 [pseudogene] 0.313 -0.082
39 255793_at AT2G33250 unknown 0.309 0.122
40 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 0.309 0.123
41 253012_at AT4G37900 unknown 0.306 0.106
42 257672_at AT3G20300 unknown 0.297 -0.052
43 249134_at AT5G43150 unknown 0.295 0.085
44 247794_at AT5G58670 ATPLC, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, ATPLC1, phospholipase C1, PLC1, phospholipase C 1, PLC1, phospholipase C1 0.262 -0.149
45 249109_at AT5G43700 ATAUX2-11, AUXIN INDUCIBLE 2-11, IAA4, indole-3-acetic acid inducible 4 0.260 0.014
46 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 0.258 0.032
47 266475_at AT2G31100 [alpha/beta-Hydrolases superfamily protein] 0.252 0.051
48 255695_at AT4G00080 UNE11, unfertilized embryo sac 11 0.251 -0.014
49 249083_at AT5G44140 ATPHB7, prohibitin 7, PHB7, prohibitin 7 0.241 -0.060
50 256011_at AT1G19230 [Riboflavin synthase-like superfamily protein] 0.240 0.133
51 248164_at AT5G54490 PBP1, pinoid-binding protein 1 0.239 0.073
52 257244_at AT3G24240 [Leucine-rich repeat receptor-like protein kinase family protein] 0.238 0.006
53 249384_at AT5G39890 unknown -0.597 -0.007
54 266454_at AT2G22750 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.589 0.101
55 247024_at AT5G66985 unknown -0.541 0.043
56 251481_at AT3G59730 LecRK-V.6, L-type lectin receptor kinase V.6 -0.450 -0.043
57 251207_at AT3G63050 unknown -0.442 -0.026
58 260092_at AT1G73280 scpl3, serine carboxypeptidase-like 3 -0.435 -0.226
59 247444_at AT5G62630 HIPL2, hipl2 protein precursor -0.359 -0.075
60 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] -0.332 0.066
61 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] -0.329 -0.075
62 252232_at AT3G49760 AtbZIP5, basic leucine-zipper 5, bZIP5, basic leucine-zipper 5 -0.326 0.068
63 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.313 -0.237
64 251213_at AT3G62490 ASY2 -0.306 -0.124
65 261956_at AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] -0.305 0.002
66 245423_at AT4G17483 [alpha/beta-Hydrolases superfamily protein] -0.300 0.003
67 259045_at AT3G03410 [EF hand calcium-binding protein family] -0.299 -0.091
68 259435_at AT1G01450 [Protein kinase superfamily protein] -0.294 -0.132
69 265204_at AT2G36650 unknown -0.272 0.098
70 251760_at AT3G55605 [Mitochondrial glycoprotein family protein] -0.270 -0.032
71 252097_at AT3G51090 unknown -0.262 -0.100
72 248728_at AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 -0.256 0.207
73 251129_at AT5G01150 unknown -0.254 0.214
74 257503_at AT1G72530 RIP7, RNA edi7ting-Interacting Protein -0.251 0.134
75 263791_at AT2G24520 AHA5, H(+)-ATPase 5, HA5, H(+)-ATPase 5 -0.251 -0.080
76 253298_at AT4G33560 [Wound-responsive family protein] -0.242 0.133
77 262671_at AT1G76040 CPK29, calcium-dependent protein kinase 29 -0.240 -0.157
78 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 -0.231 0.175
79 248729_at AT5G48010 AtTHAS1, Arabidopsis thaliana thalianol synthase 1, THAS, THALIANOL SYNTHASE, THAS1, thalianol synthase 1 -0.230 -0.167
80 245492_at AT4G16340 SPK1, SPIKE1 -0.230 -0.001
81 253774_at AT4G28530 anac074, NAC domain containing protein 74, NAC074, NAC domain containing protein 74 -0.229 0.008
82 246683_at AT5G33300 [chromosome-associated kinesin-related] -0.229 0.065
83 245511_at AT4G15755 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.225 0.176
84 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 -0.225 0.283
85 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] -0.223 0.049
86 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] -0.222 -0.300
87 251865_at AT3G54930 [Protein phosphatase 2A regulatory B subunit family protein] -0.219 0.115
88 252488_at AT3G46700 [UDP-Glycosyltransferase superfamily protein] -0.218 0.040
89 253674_at AT4G29540 AtLpxA, LpxA -0.213 -0.058
90 249099_at AT5G43550 [F-box associated ubiquitination effector family protein] -0.212 -0.095
91 260637_at AT1G62380 ACO2, ACC oxidase 2, ATACO2 -0.208 -0.065
92 247945_at AT5G57150 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.203 0.001
93 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.203 0.039
94 255178_at AT4G08050 [gypsy-like retrotransposon family (Athila), has a 0. P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] -0.203 -0.154
95 257580_at AT3G06210 [ARM repeat superfamily protein] -0.202 -0.037
96 264025_at AT2G21050 LAX2, like AUXIN RESISTANT 2 -0.201 -0.023
97 246817_at AT5G27240 [DNAJ heat shock N-terminal domain-containing protein] -0.197 -0.008
98 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 -0.196 0.179
99 254003_at AT4G26290 unknown -0.190 0.103
100 266246_at AT2G27690 CYP94C1, cytochrome P450, family 94, subfamily C, polypeptide 1 -0.187 0.136
101 253666_at AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 -0.186 0.129
102 246784_at AT5G27430 [Signal peptidase subunit] -0.186 -0.001
103 250793_at AT5G05600 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.185 -0.007