4.0:Information of module
shoot hypoxia pKAT1
In comparison with WT NAA 1h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006334 nucleosome assembly BP 7.226e-04
GO:0034728 nucleosome organization BP 7.226e-04
GO:0065004 protein-DNA complex assembly BP 7.226e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006888 ER to Golgi vesicle-mediated transport BP 3.606e-09
GO:0006354 DNA-templated transcription, elongation BP 9.652e-09
GO:0044699 single-organism process BP 1.077e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot hypoxia pKAT1		 Log2 signal ratio
WT NAA 1h
1 252650_at AT3G44690 unknown 1.049 -0.012
2 267089_at AT2G38300 [myb-like HTH transcriptional regulator family protein] 0.969 0.051
3 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.966 0.011
4 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.953 -0.019
5 259423_at AT1G13880 [ELM2 domain-containing protein] 0.878 0.010
6 257367_at AT2G25780 unknown 0.861 0.027
7 262680_at AT1G75880 [SGNH hydrolase-type esterase superfamily protein] 0.840 -0.222
8 261776_at AT1G76190 SAUR56, SMALL AUXIN UPREGULATED RNA 56 0.787 -0.140
9 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.761 0.051
10 253963_at AT4G26470 [Calcium-binding EF-hand family protein] 0.754 -0.020
11 255250_at AT4G05100 AtMYB74, myb domain protein 74, MYB74, myb domain protein 74 0.742 0.126
12 254188_at AT4G23920 ATUGE2, UDP-GLC 4-EPIMERASE 2, UGE2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 0.726 -0.007
13 264782_at AT1G08810 AtMYB60, myb domain protein 60, MYB60, myb domain protein 60 0.709 -0.117
14 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.692 0.021
15 254870_at AT4G11900 [S-locus lectin protein kinase family protein] 0.664 0.018
16 264437_at AT1G27510 EX2, EXECUTER 2 0.618 -0.029
17 266600_at AT2G46070 ATMPK12, MAPK12, MPK12, mitogen-activated protein kinase 12 0.612 -0.009
18 251454_at AT3G60080 [RING/U-box superfamily protein] 0.603 0.030
19 265222_at AT2G01970 [Endomembrane protein 70 protein family] 0.592 0.271
20 259756_at AT1G71080 [RNA polymerase II transcription elongation factor] 0.586 -0.006
21 257714_at AT3G27360 H3.1, histone 3.1 0.586 0.021
22 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.569 -0.026
23 265817_at AT2G18050 HIS1-3, histone H1-3 0.567 -0.123
24 245616_at AT4G14480 [Protein kinase superfamily protein] 0.566 -0.145
25 252989_at AT4G38420 sks9, SKU5 similar 9 0.563 0.022
26 259520_at AT1G12320 unknown 0.561 -0.026
27 251791_at AT3G55500 ATEXP16, ATEXPA16, expansin A16, ATHEXP ALPHA 1.7, EXP16, EXPANSIN 16, EXPA16, expansin A16 0.561 -0.029
28 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 0.558 0.031
29 262480_at AT1G11340 [S-locus lectin protein kinase family protein] 0.555 -0.041
30 260633_at AT1G62400 HT1, high leaf temperature 1 0.554 -0.122
31 256626_at AT3G20015 [Eukaryotic aspartyl protease family protein] 0.553 -0.087
32 261745_at AT1G08500 AtENODL18, ENODL18, early nodulin-like protein 18 0.529 -0.073
33 260353_at AT1G69230 SP1L2, SPIRAL1-like2 0.528 -0.008
34 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.524 0.158
35 250433_at AT5G10400 H3.1, histone 3.1 0.518 0.101
36 267389_at AT2G44460 BGLU28, beta glucosidase 28 0.516 -0.075
37 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a 0.511 0.096
38 262671_at AT1G76040 CPK29, calcium-dependent protein kinase 29 0.511 0.031
39 247668_at AT5G60100 APRR3, pseudo-response regulator 3, PRR3, pseudo-response regulator 3 0.496 -0.027
40 267628_at AT2G42280 AKS3, ABA-responsive kinase substrate 3, FBH4, FLOWERING BHLH 4 0.492 0.033
41 260921_at AT1G21540 [AMP-dependent synthetase and ligase family protein] 0.491 -0.090
42 261350_at AT1G79770 unknown 0.484 -0.060
43 261146_at AT1G19620 unknown 0.483 -0.028
44 257247_at AT3G24140 FMA, FAMA 0.480 0.092
45 247971_at AT5G56730 [Insulinase (Peptidase family M16) protein] 0.480 0.036
46 256763_at AT3G16860 COBL8, COBRA-like protein 8 precursor 0.480 0.135
47 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A 0.477 -0.092
48 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.476 0.024
49 245692_at AT5G04150 BHLH101 0.470 -0.004
50 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 0.468 -0.120
51 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 0.465 -0.105
52 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] 0.462 -0.118
53 257421_at AT1G12030 unknown 0.460 -0.073
54 260546_at AT2G43520 ATTI2, trypsin inhibitor protein 2, TI2, trypsin inhibitor protein 2 0.460 0.045
55 263830_at AT2G40260 [Homeodomain-like superfamily protein] 0.456 -0.011
56 252712_at AT3G43800 ATGSTU27, glutathione S-transferase tau 27, GSTU27, glutathione S-transferase tau 27 0.455 -0.031
57 254663_at AT4G18290 KAT2, potassium channel in Arabidopsis thaliana 2 0.450 -0.056
58 261957_at AT1G64660 ATMGL, methionine gamma-lyase, MGL, methionine gamma-lyase 0.448 -0.027
59 248369_at AT5G52040 At-RS41, arginine/serine-rich splicing factor 41, ATRSP41, RS41, arginine/serine-rich splicing factor 41 0.445 0.008
60 265002_at AT1G24400 AATL2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, ATLHT2, ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, LHT2, lysine histidine transporter 2 0.441 -0.064
61 264947_at AT1G77020 [DNAJ heat shock N-terminal domain-containing protein] 0.437 -0.067
62 246860_at AT5G25840 unknown 0.436 -0.105
63 262548_at AT1G31280 AGO2, argonaute 2, AtAGO2 0.436 -0.017
64 257013_at AT3G26922 [F-box/RNI-like superfamily protein] 0.435 -0.069
65 263168_at AT1G03020 [Thioredoxin superfamily protein] 0.433 0.035
66 253162_at AT4G35630 PSAT1, phosphoserine aminotransferase 1 0.430 0.016
67 246861_at AT5G25890 IAA28, indole-3-acetic acid inducible 28, IAR2, IAA-ALANINE RESISTANT 2 0.426 0.038
68 265596_at AT2G20020 ATCAF1, CAF1 0.425 -0.038
69 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 0.422 -0.010
70 248431_at AT5G51470 [Auxin-responsive GH3 family protein] 0.419 -0.051
71 261059_at AT1G01250 [Integrase-type DNA-binding superfamily protein] 0.413 -0.058
72 259514_at AT1G12480 CDI3, CARBON DIOXIDE INSENSITIVE 3, OZS1, OZONE-SENSITIVE 1, RCD3, RADICAL-INDUCED CELL DEATH 3, SLAC1, SLOW ANION CHANNEL-ASSOCIATED 1 0.413 -0.014
73 248627_at AT5G48950 DHNAT2, DHNA-CoA thioesterase 2 0.412 0.040
74 251906_at AT3G53720 ATCHX20, cation/H+ exchanger 20, CHX20, cation/H+ exchanger 20 0.405 0.009
75 252858_at AT4G39770 TPPH, trehalose-6-phosphate phosphatase H 0.405 -0.017
76 264525_at AT1G10060 ATBCAT-1, branched-chain amino acid transaminase 1, BCAT-1, branched-chain amino acid transaminase 1, BCAT1, branched-chain amino acid transferase 1 0.399 -0.107
77 244965_at ATCG00590 ORF31 -0.643 0.023
78 244966_at ATCG00600 PETG -0.414 0.310
79 266992_at AT2G39200 ATMLO12, MILDEW RESISTANCE LOCUS O 12, MLO12, MILDEW RESISTANCE LOCUS O 12 -0.375 0.093
80 246273_at AT4G36700 [RmlC-like cupins superfamily protein] -0.348 -0.112
81 266689_at AT2G19930 [RNA-dependent RNA polymerase family protein] -0.324 -0.067
82 244967_at ATCG00630 PSAJ -0.303 0.047
83 261818_at AT1G11390 [Protein kinase superfamily protein] -0.302 0.155
84 258429_at AT3G16620 ATTOC120, ARABIDOPSIS THALIANA TRANSLOCON OUTER COMPLEX PROTEIN 120, TOC120, translocon outer complex protein 120 -0.285 -0.070
85 249947_at AT5G19200 TSC10B, TSC10B -0.285 0.013
86 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 -0.278 0.054
87 245025_at ATCG00130 ATPF -0.276 0.049
88 260170_at AT1G71890 ATSUC5, SUCROSE-PROTON SYMPORTER 5, SUC5 -0.268 0.097
89 249772_at AT5G24130 unknown -0.257 -0.025
90 252911_at AT4G39510 CYP96A12, cytochrome P450, family 96, subfamily A, polypeptide 12 -0.256 -0.041
91 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.246 0.032
92 250310_at AT5G12230 MED19A -0.245 0.142
93 262348_at AT2G48160 [Tudor/PWWP/MBT domain-containing protein] -0.243 -0.011
94 252854_at AT4G39370 UBP27, ubiquitin-specific protease 27 -0.238 0.018
95 254174_at AT4G24120 ATYSL1, YELLOW STRIPE LIKE 1, YSL1, YELLOW STRIPE like 1 -0.236 0.017
96 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] -0.235 0.112
97 260472_at AT1G10990 unknown -0.232 0.037
98 256325_at AT3G02330 [Pentatricopeptide repeat (PPR) superfamily protein] -0.231 0.002
99 262251_at AT1G53760 unknown -0.230 0.089
100 254185_at AT4G23990 ATCSLG3, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, CSLG3, cellulose synthase like G3 -0.226 0.048
101 253551_at AT4G30996 NKS1, NA(+)- AND K(+)-SENSITIVE 1 -0.224 0.050
102 265449_at AT2G46610 At-RS31a, arginine/serine-rich splicing factor 31a, RS31a, arginine/serine-rich splicing factor 31a -0.223 0.059
103 264907_at AT2G17280 [Phosphoglycerate mutase family protein] -0.221 0.067
104 262496_at AT1G21790 [TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein] -0.220 -0.014
105 261597_at AT1G49780 PUB26, plant U-box 26 -0.220 0.168
106 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 -0.215 0.016
107 245019_at ATCG00530 YCF10 -0.215 0.074
108 254350_at AT4G22280 [F-box/RNI-like superfamily protein] -0.213 -0.086
109 261937_at AT1G22570 [Major facilitator superfamily protein] -0.212 0.279
110 264353_at AT1G03260 [SNARE associated Golgi protein family] -0.212 0.007
111 251630_at AT3G57420 unknown -0.210 0.036
112 252189_at AT3G50070 CYCD3;3, CYCLIN D3;3 -0.208 -0.004
113 251812_at AT3G54970 [D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein] -0.201 -0.012
114 245594_at AT4G14570 AARE, acylamino acid-releasing enzyme, AtAARE -0.199 0.005
115 254449_at AT4G20910 CRM2, CORYMBOSA 2, HEN1, HUA ENHANCER 1 -0.199 -0.001
116 254333_at AT4G22753 ATSMO1-3, SMO1-3, sterol 4-alpha methyl oxidase 1-3 -0.198 -0.002
117 265051_at AT1G52100 [Mannose-binding lectin superfamily protein] -0.198 0.016
118 246586_at AT5G14770 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.196 -0.067
119 247703_at AT5G59560 SRR1, SENSITIVITY TO RED LIGHT REDUCED 1 -0.195 0.065
120 258729_at AT3G11900 ANT1, aromatic and neutral transporter 1 -0.195 0.207
121 266542_at AT2G35100 ARAD1, ARABINAN DEFICIENT 1 -0.195 -0.001
122 249452_at AT5G39500 ERMO1, ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNL1, GNOM-like 1 -0.195 0.036
123 245445_at AT4G16750 [Integrase-type DNA-binding superfamily protein] -0.193 -0.005
124 260008_at AT1G68070 [Zinc finger, C3HC4 type (RING finger) family protein] -0.192 0.054
125 253820_at AT4G28370 FLY1, FLYING SAUCER 1 -0.192 0.003
126 255885_at AT1G20330 CVP1, COTYLEDON VASCULAR PATTERN 1, FRL1, FRILL1, SMT2, sterol methyltransferase 2 -0.190 0.051
127 257648_at AT3G16840 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.190 0.009
128 255349_at AT4G03830 unknown -0.188 -0.039
129 266410_at AT2G38770 EMB2765, EMBRYO DEFECTIVE 2765 -0.188 0.009
130 252170_at AT3G50480 HR4, homolog of RPW8 4 -0.187 0.034
131 248269_at AT5G53470 ACBP, ACYL-COA BINDING PROTEIN, ACBP1, acyl-CoA binding protein 1, AtACBP1 -0.185 0.027
132 264705_at AT1G09620 [ATP binding] -0.183 0.009
133 261405_at AT1G18740 unknown -0.183 0.076
134 255417_at AT4G03190 AFB1, AUXIN SIGNALING F BOX PROTEIN 1, ATGRH1, GRH1, GRR1-like protein 1 -0.183 -0.062
135 244997_at ATCG00170 RPOC2 -0.182 0.054
136 262338_at AT1G64185 [Lactoylglutathione lyase / glyoxalase I family protein] -0.182 -0.043
137 255638_at AT4G00740 QUA3, QUASIMODO 3 -0.182 -0.025
138 257616_at AT3G26540 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.182 0.011
139 245558_at AT4G15430 [ERD (early-responsive to dehydration stress) family protein] -0.181 -0.002
140 261377_at AT1G18850 unknown -0.179 0.020
141 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 -0.179 -0.035
142 245017_at ATCG00510 PSAI, photsystem I subunit I -0.178 0.081
143 266774_at AT2G29050 ATRBL1, RHOMBOID-like 1, RBL1, RHOMBOID-like 1 -0.177 0.016
144 264116_at AT2G31320 PARP1, POLY(ADP-RIBOSE) POLYMERASE 1 -0.176 0.009
145 265663_at AT2G24290 unknown -0.176 -0.064
146 262635_at AT1G06570 HPD, 4-hydroxyphenylpyruvate dioxygenase, HPPD, 4-hydroxyphenylpyruvate dioxygenase, PDS1, phytoene desaturation 1 -0.175 0.002
147 253887_at AT4G27730 ATOPT6, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, OPT6, oligopeptide transporter 1 -0.174 0.027
148 250972_at AT5G02840 LCL1, LHY/CCA1-like 1 -0.173 0.009
149 265424_at AT2G20780 [Major facilitator superfamily protein] -0.173 0.043
150 258323_at AT3G22750 [Protein kinase superfamily protein] -0.171 0.041
151 255036_at AT4G09560 [Protease-associated (PA) RING/U-box zinc finger family protein] -0.171 0.019