4.0:Information of module
shoot control p35S
In comparison with Imbibed 24 h ABA 30uM (seed) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009853 photorespiration BP 3.224e-06
GO:0043094 cellular metabolic compound salvage BP 8.754e-06
GO:0045454 cell redox homeostasis BP 1.311e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 3.301e-52
GO:0015979 photosynthesis BP 1.605e-21
GO:0006091 generation of precursor metabolites and ... BP 3.088e-18
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot control p35S		 Log2 signal ratio
Imbibed 24 h ABA 30uM (seed)
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.827 -0.046
2 258201_at AT3G13910 unknown 0.649 0.089
3 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 0.509 0.065
4 260025_at AT1G30070 [SGS domain-containing protein] 0.476 -0.008
5 255028_at AT4G09890 unknown 0.401 -0.114
6 246270_at AT4G36500 unknown 0.370 -0.164
7 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.357 -0.062
8 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.357 -0.100
9 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.354 0.113
10 261259_at AT1G26660 [Prefoldin chaperone subunit family protein] 0.331 -0.011
11 258617_at AT3G03000 [EF hand calcium-binding protein family] 0.307 0.106
12 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.303 0.041
13 253726_at AT4G29430 rps15ae, ribosomal protein S15A E 0.303 -0.076
14 247836_at AT5G57860 [Ubiquitin-like superfamily protein] 0.303 -0.089
15 247255_at AT5G64780 [Uncharacterised conserved protein UCP009193] 0.291 0.049
16 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.290 0.045
17 250353_at AT5G11630 NOXY2, nonresponding to oxylipins 2 0.287 -0.030
18 264974_at AT1G27050 [homeobox protein 54 (HB54)] 0.283 0.024
19 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.281 0.174
20 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 0.280 -0.008
21 262286_at AT1G68585 unknown 0.275 -0.019
22 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C 0.270 -0.104
23 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.269 0.027
24 252352_at AT3G48185 unknown 0.268 -0.028
25 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.261 0.045
26 260040_at AT1G68765 IDA, INFLORESCENCE DEFICIENT IN ABSCISSION 0.259 0.055
27 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.257 -0.014
28 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor 0.256 0.017
29 254362_at AT4G22160 unknown 0.255 -0.007
30 256720_at AT2G34140 [Dof-type zinc finger DNA-binding family protein] 0.252 0.016
31 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] 0.248 -0.062
32 248632_at AT5G49010 EMB2812, EMBRYO DEFECTIVE 2812, SLD5, SYNTHETIC LETHALITY WITH DPB11-1 5 0.247 -0.056
33 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 0.247 0.004
34 253044_at AT4G37290 unknown 0.242 -0.029
35 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 0.239 0.002
36 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.239 -0.032
37 265937_at AT2G19610 [RING/U-box superfamily protein] 0.238 -0.054
38 265226_at AT2G28430 unknown 0.237 -0.086
39 254201_at AT4G24130 unknown 0.236 -0.017
40 247146_at AT5G65610 unknown 0.236 0.044
41 257081_at AT3G30460 [RING/U-box superfamily protein] 0.233 0.182
42 249822_at AT5G23710 [DNA binding] 0.230 -0.017
43 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.230 -0.039
44 260622_at AT1G07980 NF-YC10, nuclear factor Y, subunit C10 0.229 0.028
45 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 0.228 0.085
46 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.227 -0.109
47 264616_at AT2G17740 [Cysteine/Histidine-rich C1 domain family protein] 0.225 -0.044
48 260367_at AT1G69760 unknown 0.221 -0.098
49 259095_at AT3G05020 ACP, ACYL CARRIER PROTEIN, ACP1, acyl carrier protein 1 0.220 -0.052
50 245337_at AT4G16566 HINT4, histidine triad nucleotide-binding 4 0.220 -0.064
51 259822_at AT1G66230 AtMYB20, myb domain protein 20, MYB20, myb domain protein 20 0.219 0.003
52 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] 0.219 -0.053
53 253165_at AT4G35320 unknown 0.217 -0.069
54 262828_at AT1G14950 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.214 0.238
55 257517_at AT3G16330 unknown 0.213 0.072
56 263693_at AT1G31200 ATPP2-A9, phloem protein 2-A9, PP2-A9, phloem protein 2-A9 0.213 0.141
57 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 0.213 0.131
58 252224_at AT3G49860 ARLA1B, ADP-ribosylation factor-like A1B, ATARLA1B, ADP-ribosylation factor-like A1B 0.212 -0.060
59 250740_at AT5G05760 ATSED5, ATSYP31, SED5, T-SNARE SED 5, SYP31, syntaxin of plants 31 0.207 0.011
60 261409_at AT1G07640 OBP2, URP3, UAS-TAGGED ROOT PATTERNING3 0.207 -0.088
61 248069_at AT5G55650 unknown 0.207 -0.056
62 265732_at AT2G01300 unknown 0.205 0.028
63 265510_at AT2G05630 ATG8D 0.205 -0.008
64 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.202 -0.146
65 250722_at AT5G06190 unknown 0.201 0.010
66 246054_at AT5G08360 unknown 0.201 0.009
67 250734_at AT5G06270 unknown 0.198 -0.046
68 252565_at AT3G46000 ADF2, actin depolymerizing factor 2 0.198 -0.002
69 246581_at AT1G31760 [SWIB/MDM2 domain superfamily protein] 0.195 0.025
70 248512_at AT5G50460 [secE/sec61-gamma protein transport protein] 0.193 0.000
71 252222_at AT3G49845 WIH3, WINDHOSE 3 0.190 -0.027
72 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 0.190 -0.024
73 254656_at AT4G18070 unknown 0.189 -0.037
74 245445_at AT4G16750 [Integrase-type DNA-binding superfamily protein] 0.189 0.024
75 250158_at AT5G15190 unknown 0.189 0.027
76 248646_at AT5G49100 unknown 0.188 0.004
77 253629_at AT4G30450 [glycine-rich protein] 0.188 -0.145
78 267463_at AT2G33845 [Nucleic acid-binding, OB-fold-like protein] 0.188 0.009
79 262438_at AT1G47410 unknown 0.187 0.008
80 256145_at AT1G48750 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.187 0.036
81 244985_at ATCG00810 RPL22, ribosomal protein L22 -1.234 0.038
82 245025_at ATCG00130 ATPF -1.114 0.401
83 244981_at ATCG00770 RPS8, ribosomal protein S8 -1.106 0.074
84 244980_at ATCG00760 RPL36, ribosomal protein L36 -1.031 0.115
85 244966_at ATCG00600 PETG -1.009 0.216
86 245008_at ATCG00360 YCF3 -0.910 0.325
87 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.904 0.110
88 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.898 0.232
89 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.850 0.219
90 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.832 0.147
91 245017_at ATCG00510 PSAI, photsystem I subunit I -0.812 0.270
92 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.798 0.224
93 244932_at ATCG01060 PSAC -0.796 0.309
94 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.784 0.137
95 244965_at ATCG00590 ORF31 -0.760 0.224
96 244936_at ATCG01100 NDHA -0.741 0.116
97 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.733 0.098
98 244998_at ATCG00180 RPOC1 -0.721 0.111
99 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.715 0.034
100 244933_at ATCG01070 NDHE -0.709 0.316
101 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.706 0.049
102 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.704 0.062
103 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.702 0.080
104 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.693 0.179
105 245026_at ATCG00140 ATPH -0.657 0.241
106 245019_at ATCG00530 YCF10 -0.646 0.104
107 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.639 0.023
108 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.636 -0.048
109 244934_at ATCG01080 NDHG -0.634 0.195
110 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.632 0.250
111 244967_at ATCG00630 PSAJ -0.603 0.114
112 245015_at ATCG00490 RBCL -0.601 0.140
113 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.601 0.015
114 257334_at ATMG01370 ORF111D -0.590 -0.030
115 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.584 0.031
116 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.566 0.049
117 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.553 0.041
118 244997_at ATCG00170 RPOC2 -0.551 0.328
119 245004_at ATCG00300 YCF9 -0.544 0.044
120 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.538 0.255
121 245018_at ATCG00520 YCF4 -0.527 0.110
122 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.503 0.115
123 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.502 0.265
124 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.502 0.066
125 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.496 0.209
126 245014_at ATCG00480 ATPB, ATP synthase subunit beta, PB, ATP synthase subunit beta -0.494 0.082
127 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.489 0.007
128 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.486 -0.021
129 244935_at ATCG01090 NDHI -0.464 0.079
130 245006_at ATCG00340 PSAB -0.464 0.215
131 255703_at AT4G00040 [Chalcone and stilbene synthase family protein] -0.455 0.039
132 261845_at AT1G15960 ATNRAMP6, NRAMP6, NRAMP metal ion transporter 6 -0.454 -0.100
133 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.449 0.026
134 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.437 -0.031
135 244962_at ATCG01050 NDHD -0.433 0.233
136 244976_at ATCG00720 PETB, photosynthetic electron transfer B -0.432 0.047
137 251347_at AT3G61010 [Ferritin/ribonucleotide reductase-like family protein] -0.425 0.047
138 252208_at AT3G50380 [INVOLVED IN: protein localization] -0.424 0.047
139 266971_at AT2G39580 unknown -0.424 0.036
140 249006_at AT5G44660 unknown -0.418 0.016
141 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.414 -0.017
142 245020_at ATCG00540 PETA, photosynthetic electron transfer A -0.411 0.069
143 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 -0.405 -0.014
144 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.405 0.096
145 244961_at ATCG01040 YCF5 -0.403 0.188
146 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 -0.401 -0.059
147 265902_at AT2G25590 [Plant Tudor-like protein] -0.401 0.056
148 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.387 0.142
149 257971_at AT3G27530 GC6, golgin candidate 6, MAG4, MAIGO 4 -0.384 -0.008
150 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.381 0.073
151 245050_at ATCG00070 PSBK, photosystem II reaction center protein K precursor -0.379 0.078
152 244971_at ATCG00670 CLPP1, CASEINOLYTIC PROTEASE P 1, PCLPP, plastid-encoded CLP P -0.366 0.046
153 244906_at ATMG00690 ORF240A -0.358 0.106
154 246897_at AT5G25560 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.352 0.025
155 256734_at AT3G29390 RIK, RS2-interacting KH protein -0.352 -0.019
156 264166_at AT1G65370 [TRAF-like family protein] -0.349 0.026
157 244978_at ATCG00740 RPOA, RNA polymerase subunit alpha -0.346 0.060
158 249808_at AT5G23890 [LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope] -0.336 0.069
159 252537_at AT3G45710 [Major facilitator superfamily protein] -0.336 0.024