4.0:Information of module
shoot control p35S
In comparison with root cap pGL2(QC pSCRBRI1) 0h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009853 photorespiration BP 3.224e-06
GO:0043094 cellular metabolic compound salvage BP 8.754e-06
GO:0045454 cell redox homeostasis BP 1.311e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 3.301e-52
GO:0015979 photosynthesis BP 1.605e-21
GO:0006091 generation of precursor metabolites and ... BP 3.088e-18
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot control p35S		 Log2 signal ratio
root cap pGL2(QC pSCRBRI1) 0h BL
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.827 -4.520
2 258201_at AT3G13910 unknown 0.649 0.699
3 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 0.509 -4.325
4 260025_at AT1G30070 [SGS domain-containing protein] 0.476 -0.045
5 255028_at AT4G09890 unknown 0.401 0.177
6 246270_at AT4G36500 unknown 0.370 -1.469
7 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.357 -0.273
8 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.357 -4.467
9 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.354 -5.511
10 261259_at AT1G26660 [Prefoldin chaperone subunit family protein] 0.331 0.176
11 258617_at AT3G03000 [EF hand calcium-binding protein family] 0.307 -0.891
12 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.303 0.337
13 253726_at AT4G29430 rps15ae, ribosomal protein S15A E 0.303 -0.168
14 247836_at AT5G57860 [Ubiquitin-like superfamily protein] 0.303 0.403
15 247255_at AT5G64780 [Uncharacterised conserved protein UCP009193] 0.291 -0.075
16 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.290 -0.726
17 250353_at AT5G11630 NOXY2, nonresponding to oxylipins 2 0.287 0.134
18 264974_at AT1G27050 [homeobox protein 54 (HB54)] 0.283 -0.179
19 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.281 -1.967
20 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 0.280 -0.797
21 262286_at AT1G68585 unknown 0.275 -4.027
22 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C 0.270 -2.019
23 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.269 0.146
24 252352_at AT3G48185 unknown 0.268 -4.712
25 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.261 -2.405
26 260040_at AT1G68765 IDA, INFLORESCENCE DEFICIENT IN ABSCISSION 0.259 -0.961
27 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.257 -2.235
28 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor 0.256 -3.793
29 254362_at AT4G22160 unknown 0.255 -1.162
30 256720_at AT2G34140 [Dof-type zinc finger DNA-binding family protein] 0.252 -4.664
31 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] 0.248 -0.709
32 248632_at AT5G49010 EMB2812, EMBRYO DEFECTIVE 2812, SLD5, SYNTHETIC LETHALITY WITH DPB11-1 5 0.247 -0.526
33 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 0.247 0.146
34 253044_at AT4G37290 unknown 0.242 -1.724
35 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 0.239 -4.671
36 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.239 0.084
37 265937_at AT2G19610 [RING/U-box superfamily protein] 0.238 -1.117
38 265226_at AT2G28430 unknown 0.237 0.193
39 254201_at AT4G24130 unknown 0.236 2.642
40 247146_at AT5G65610 unknown 0.236 2.111
41 257081_at AT3G30460 [RING/U-box superfamily protein] 0.233 -1.373
42 249822_at AT5G23710 [DNA binding] 0.230 0.005
43 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.230 0.316
44 260622_at AT1G07980 NF-YC10, nuclear factor Y, subunit C10 0.229 0.215
45 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 0.228 -3.060
46 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.227 2.383
47 264616_at AT2G17740 [Cysteine/Histidine-rich C1 domain family protein] 0.225 -0.381
48 260367_at AT1G69760 unknown 0.221 -1.791
49 259095_at AT3G05020 ACP, ACYL CARRIER PROTEIN, ACP1, acyl carrier protein 1 0.220 1.844
50 245337_at AT4G16566 HINT4, histidine triad nucleotide-binding 4 0.220 0.533
51 259822_at AT1G66230 AtMYB20, myb domain protein 20, MYB20, myb domain protein 20 0.219 -3.900
52 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] 0.219 3.795
53 253165_at AT4G35320 unknown 0.217 -1.499
54 262828_at AT1G14950 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.214 0.146
55 257517_at AT3G16330 unknown 0.213 -4.904
56 263693_at AT1G31200 ATPP2-A9, phloem protein 2-A9, PP2-A9, phloem protein 2-A9 0.213 -2.949
57 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 0.213 -2.573
58 252224_at AT3G49860 ARLA1B, ADP-ribosylation factor-like A1B, ATARLA1B, ADP-ribosylation factor-like A1B 0.212 -0.081
59 250740_at AT5G05760 ATSED5, ATSYP31, SED5, T-SNARE SED 5, SYP31, syntaxin of plants 31 0.207 -0.280
60 261409_at AT1G07640 OBP2, URP3, UAS-TAGGED ROOT PATTERNING3 0.207 -3.893
61 248069_at AT5G55650 unknown 0.207 -0.821
62 265732_at AT2G01300 unknown 0.205 -4.426
63 265510_at AT2G05630 ATG8D 0.205 0.083
64 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.202 2.016
65 250722_at AT5G06190 unknown 0.201 0.684
66 246054_at AT5G08360 unknown 0.201 -0.587
67 250734_at AT5G06270 unknown 0.198 -1.725
68 252565_at AT3G46000 ADF2, actin depolymerizing factor 2 0.198 0.563
69 246581_at AT1G31760 [SWIB/MDM2 domain superfamily protein] 0.195 -0.297
70 248512_at AT5G50460 [secE/sec61-gamma protein transport protein] 0.193 0.710
71 252222_at AT3G49845 WIH3, WINDHOSE 3 0.190 -2.491
72 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 0.190 -2.691
73 254656_at AT4G18070 unknown 0.189 0.307
74 245445_at AT4G16750 [Integrase-type DNA-binding superfamily protein] 0.189 1.062
75 250158_at AT5G15190 unknown 0.189 -2.942
76 248646_at AT5G49100 unknown 0.188 -1.337
77 253629_at AT4G30450 [glycine-rich protein] 0.188 -4.533
78 267463_at AT2G33845 [Nucleic acid-binding, OB-fold-like protein] 0.188 -0.201
79 262438_at AT1G47410 unknown 0.187 -3.714
80 256145_at AT1G48750 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.187 0.146
81 244985_at ATCG00810 RPL22, ribosomal protein L22 -1.234 1.559
82 245025_at ATCG00130 ATPF -1.114 1.583
83 244981_at ATCG00770 RPS8, ribosomal protein S8 -1.106 2.078
84 244980_at ATCG00760 RPL36, ribosomal protein L36 -1.031 0.953
85 244966_at ATCG00600 PETG -1.009 0.146
86 245008_at ATCG00360 YCF3 -0.910 0.597
87 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.904 1.493
88 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.898 1.123
89 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.850 1.875
90 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.832 1.338
91 245017_at ATCG00510 PSAI, photsystem I subunit I -0.812 2.040
92 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.798 0.498
93 244932_at ATCG01060 PSAC -0.796 0.146
94 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.784 -0.786
95 244965_at ATCG00590 ORF31 -0.760 0.461
96 244936_at ATCG01100 NDHA -0.741 0.640
97 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.733 1.136
98 244998_at ATCG00180 RPOC1 -0.721 2.482
99 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.715 1.210
100 244933_at ATCG01070 NDHE -0.709 0.541
101 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.706 0.485
102 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.704 1.686
103 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.702 0.992
104 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.693 1.374
105 245026_at ATCG00140 ATPH -0.657 1.486
106 245019_at ATCG00530 YCF10 -0.646 0.259
107 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.639 0.692
108 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.636 1.112
109 244934_at ATCG01080 NDHG -0.634 0.512
110 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.632 1.541
111 244967_at ATCG00630 PSAJ -0.603 -0.148
112 245015_at ATCG00490 RBCL -0.601 1.321
113 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.601 1.501
114 257334_at ATMG01370 ORF111D -0.590 -0.646
115 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.584 0.743
116 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.566 0.480
117 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.553 1.397
118 244997_at ATCG00170 RPOC2 -0.551 1.519
119 245004_at ATCG00300 YCF9 -0.544 1.413
120 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.538 0.721
121 245018_at ATCG00520 YCF4 -0.527 0.152
122 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.503 0.945
123 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.502 1.387
124 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.502 0.551
125 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.496 0.146
126 245014_at ATCG00480 ATPB, ATP synthase subunit beta, PB, ATP synthase subunit beta -0.494 0.531
127 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.489 1.318
128 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.486 2.501
129 244935_at ATCG01090 NDHI -0.464 0.411
130 245006_at ATCG00340 PSAB -0.464 0.715
131 255703_at AT4G00040 [Chalcone and stilbene synthase family protein] -0.455 1.146
132 261845_at AT1G15960 ATNRAMP6, NRAMP6, NRAMP metal ion transporter 6 -0.454 -0.346
133 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.449 0.146
134 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.437 0.152
135 244962_at ATCG01050 NDHD -0.433 0.800
136 244976_at ATCG00720 PETB, photosynthetic electron transfer B -0.432 0.633
137 251347_at AT3G61010 [Ferritin/ribonucleotide reductase-like family protein] -0.425 1.366
138 252208_at AT3G50380 [INVOLVED IN: protein localization] -0.424 0.972
139 266971_at AT2G39580 unknown -0.424 0.425
140 249006_at AT5G44660 unknown -0.418 0.050
141 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.414 -0.381
142 245020_at ATCG00540 PETA, photosynthetic electron transfer A -0.411 1.295
143 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 -0.405 0.211
144 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.405 1.500
145 244961_at ATCG01040 YCF5 -0.403 0.860
146 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 -0.401 0.897
147 265902_at AT2G25590 [Plant Tudor-like protein] -0.401 1.723
148 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.387 0.966
149 257971_at AT3G27530 GC6, golgin candidate 6, MAG4, MAIGO 4 -0.384 0.393
150 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.381 -1.739
151 245050_at ATCG00070 PSBK, photosystem II reaction center protein K precursor -0.379 0.466
152 244971_at ATCG00670 CLPP1, CASEINOLYTIC PROTEASE P 1, PCLPP, plastid-encoded CLP P -0.366 1.409
153 244906_at ATMG00690 ORF240A -0.358 1.187
154 246897_at AT5G25560 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.352 0.585
155 256734_at AT3G29390 RIK, RS2-interacting KH protein -0.352 0.685
156 264166_at AT1G65370 [TRAF-like family protein] -0.349 0.704
157 244978_at ATCG00740 RPOA, RNA polymerase subunit alpha -0.346 0.763
158 249808_at AT5G23890 [LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope] -0.336 0.817
159 252537_at AT3G45710 [Major facilitator superfamily protein] -0.336 -2.231