4.0:Information of module
shoot control p35S
In comparison with Control KNO3 roots - 2hours help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009853 photorespiration BP 3.224e-06
GO:0043094 cellular metabolic compound salvage BP 8.754e-06
GO:0045454 cell redox homeostasis BP 1.311e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 3.301e-52
GO:0015979 photosynthesis BP 1.605e-21
GO:0006091 generation of precursor metabolites and ... BP 3.088e-18
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot control p35S		 Log2 signal ratio
Control KNO3 roots - 2hours
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.827 0.008
2 258201_at AT3G13910 unknown 0.649 0.053
3 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 0.509 0.000
4 260025_at AT1G30070 [SGS domain-containing protein] 0.476 0.069
5 255028_at AT4G09890 unknown 0.401 -0.026
6 246270_at AT4G36500 unknown 0.370 0.042
7 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.357 0.049
8 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.357 0.119
9 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.354 0.037
10 261259_at AT1G26660 [Prefoldin chaperone subunit family protein] 0.331 0.069
11 258617_at AT3G03000 [EF hand calcium-binding protein family] 0.307 0.083
12 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.303 -0.009
13 253726_at AT4G29430 rps15ae, ribosomal protein S15A E 0.303 0.164
14 247836_at AT5G57860 [Ubiquitin-like superfamily protein] 0.303 -0.023
15 247255_at AT5G64780 [Uncharacterised conserved protein UCP009193] 0.291 0.032
16 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.290 0.161
17 250353_at AT5G11630 NOXY2, nonresponding to oxylipins 2 0.287 0.025
18 264974_at AT1G27050 [homeobox protein 54 (HB54)] 0.283 0.062
19 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.281 0.006
20 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 0.280 -0.012
21 262286_at AT1G68585 unknown 0.275 -0.035
22 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C 0.270 0.007
23 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.269 0.012
24 252352_at AT3G48185 unknown 0.268 -0.165
25 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.261 -0.027
26 260040_at AT1G68765 IDA, INFLORESCENCE DEFICIENT IN ABSCISSION 0.259 0.045
27 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.257 0.035
28 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor 0.256 0.001
29 254362_at AT4G22160 unknown 0.255 0.065
30 256720_at AT2G34140 [Dof-type zinc finger DNA-binding family protein] 0.252 0.059
31 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] 0.248 -0.037
32 248632_at AT5G49010 EMB2812, EMBRYO DEFECTIVE 2812, SLD5, SYNTHETIC LETHALITY WITH DPB11-1 5 0.247 0.020
33 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 0.247 -0.018
34 253044_at AT4G37290 unknown 0.242 0.028
35 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 0.239 -0.052
36 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.239 -0.007
37 265937_at AT2G19610 [RING/U-box superfamily protein] 0.238 0.000
38 265226_at AT2G28430 unknown 0.237 -0.005
39 254201_at AT4G24130 unknown 0.236 0.049
40 247146_at AT5G65610 unknown 0.236 -0.023
41 257081_at AT3G30460 [RING/U-box superfamily protein] 0.233 0.033
42 249822_at AT5G23710 [DNA binding] 0.230 0.061
43 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.230 -0.045
44 260622_at AT1G07980 NF-YC10, nuclear factor Y, subunit C10 0.229 0.049
45 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 0.228 -0.020
46 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.227 0.034
47 264616_at AT2G17740 [Cysteine/Histidine-rich C1 domain family protein] 0.225 0.001
48 260367_at AT1G69760 unknown 0.221 0.076
49 259095_at AT3G05020 ACP, ACYL CARRIER PROTEIN, ACP1, acyl carrier protein 1 0.220 0.002
50 245337_at AT4G16566 HINT4, histidine triad nucleotide-binding 4 0.220 0.036
51 259822_at AT1G66230 AtMYB20, myb domain protein 20, MYB20, myb domain protein 20 0.219 0.009
52 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] 0.219 -0.115
53 253165_at AT4G35320 unknown 0.217 0.030
54 262828_at AT1G14950 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.214 -0.019
55 257517_at AT3G16330 unknown 0.213 0.131
56 263693_at AT1G31200 ATPP2-A9, phloem protein 2-A9, PP2-A9, phloem protein 2-A9 0.213 0.033
57 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 0.213 0.034
58 252224_at AT3G49860 ARLA1B, ADP-ribosylation factor-like A1B, ATARLA1B, ADP-ribosylation factor-like A1B 0.212 0.019
59 250740_at AT5G05760 ATSED5, ATSYP31, SED5, T-SNARE SED 5, SYP31, syntaxin of plants 31 0.207 0.000
60 261409_at AT1G07640 OBP2, URP3, UAS-TAGGED ROOT PATTERNING3 0.207 -0.006
61 248069_at AT5G55650 unknown 0.207 -0.007
62 265732_at AT2G01300 unknown 0.205 0.003
63 265510_at AT2G05630 ATG8D 0.205 0.015
64 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.202 0.017
65 250722_at AT5G06190 unknown 0.201 -0.010
66 246054_at AT5G08360 unknown 0.201 0.018
67 250734_at AT5G06270 unknown 0.198 0.078
68 252565_at AT3G46000 ADF2, actin depolymerizing factor 2 0.198 -0.009
69 246581_at AT1G31760 [SWIB/MDM2 domain superfamily protein] 0.195 -0.028
70 248512_at AT5G50460 [secE/sec61-gamma protein transport protein] 0.193 -0.009
71 252222_at AT3G49845 WIH3, WINDHOSE 3 0.190 0.016
72 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 0.190 -0.040
73 254656_at AT4G18070 unknown 0.189 0.036
74 245445_at AT4G16750 [Integrase-type DNA-binding superfamily protein] 0.189 0.102
75 250158_at AT5G15190 unknown 0.189 -0.000
76 248646_at AT5G49100 unknown 0.188 -0.013
77 253629_at AT4G30450 [glycine-rich protein] 0.188 -0.002
78 267463_at AT2G33845 [Nucleic acid-binding, OB-fold-like protein] 0.188 0.050
79 262438_at AT1G47410 unknown 0.187 0.058
80 256145_at AT1G48750 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.187 0.013
81 244985_at ATCG00810 RPL22, ribosomal protein L22 -1.234 -0.009
82 245025_at ATCG00130 ATPF -1.114 0.055
83 244981_at ATCG00770 RPS8, ribosomal protein S8 -1.106 -0.108
84 244980_at ATCG00760 RPL36, ribosomal protein L36 -1.031 -0.086
85 244966_at ATCG00600 PETG -1.009 -0.143
86 245008_at ATCG00360 YCF3 -0.910 -0.126
87 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.904 0.044
88 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.898 -0.036
89 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.850 0.115
90 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.832 -0.229
91 245017_at ATCG00510 PSAI, photsystem I subunit I -0.812 -0.133
92 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.798 -0.073
93 244932_at ATCG01060 PSAC -0.796 -0.142
94 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.784 -0.062
95 244965_at ATCG00590 ORF31 -0.760 -0.252
96 244936_at ATCG01100 NDHA -0.741 -0.056
97 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.733 -0.071
98 244998_at ATCG00180 RPOC1 -0.721 -0.091
99 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.715 -0.067
100 244933_at ATCG01070 NDHE -0.709 -0.118
101 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.706 -0.071
102 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.704 -0.060
103 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.702 -0.033
104 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.693 -0.035
105 245026_at ATCG00140 ATPH -0.657 -0.051
106 245019_at ATCG00530 YCF10 -0.646 -0.047
107 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.639 -0.007
108 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.636 -0.089
109 244934_at ATCG01080 NDHG -0.634 -0.061
110 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.632 -0.081
111 244967_at ATCG00630 PSAJ -0.603 0.104
112 245015_at ATCG00490 RBCL -0.601 -0.144
113 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.601 -0.057
114 257334_at ATMG01370 ORF111D -0.590 -0.053
115 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.584 0.025
116 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.566 -0.077
117 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.553 0.007
118 244997_at ATCG00170 RPOC2 -0.551 -0.150
119 245004_at ATCG00300 YCF9 -0.544 -0.056
120 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.538 0.002
121 245018_at ATCG00520 YCF4 -0.527 -0.059
122 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.503 0.028
123 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.502 0.024
124 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.502 -0.079
125 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.496 -0.096
126 245014_at ATCG00480 ATPB, ATP synthase subunit beta, PB, ATP synthase subunit beta -0.494 0.027
127 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.489 -0.106
128 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.486 0.024
129 244935_at ATCG01090 NDHI -0.464 -0.061
130 245006_at ATCG00340 PSAB -0.464 -0.097
131 255703_at AT4G00040 [Chalcone and stilbene synthase family protein] -0.455 -0.056
132 261845_at AT1G15960 ATNRAMP6, NRAMP6, NRAMP metal ion transporter 6 -0.454 0.043
133 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.449 -0.019
134 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.437 -0.129
135 244962_at ATCG01050 NDHD -0.433 -0.085
136 244976_at ATCG00720 PETB, photosynthetic electron transfer B -0.432 -0.022
137 251347_at AT3G61010 [Ferritin/ribonucleotide reductase-like family protein] -0.425 -0.055
138 252208_at AT3G50380 [INVOLVED IN: protein localization] -0.424 -0.129
139 266971_at AT2G39580 unknown -0.424 -0.052
140 249006_at AT5G44660 unknown -0.418 -0.042
141 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.414 -0.050
142 245020_at ATCG00540 PETA, photosynthetic electron transfer A -0.411 -0.024
143 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 -0.405 0.003
144 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.405 -0.088
145 244961_at ATCG01040 YCF5 -0.403 0.050
146 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 -0.401 -0.029
147 265902_at AT2G25590 [Plant Tudor-like protein] -0.401 -0.060
148 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.387 -0.063
149 257971_at AT3G27530 GC6, golgin candidate 6, MAG4, MAIGO 4 -0.384 0.017
150 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.381 -0.009
151 245050_at ATCG00070 PSBK, photosystem II reaction center protein K precursor -0.379 -0.064
152 244971_at ATCG00670 CLPP1, CASEINOLYTIC PROTEASE P 1, PCLPP, plastid-encoded CLP P -0.366 0.001
153 244906_at ATMG00690 ORF240A -0.358 0.048
154 246897_at AT5G25560 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.352 -0.070
155 256734_at AT3G29390 RIK, RS2-interacting KH protein -0.352 -0.060
156 264166_at AT1G65370 [TRAF-like family protein] -0.349 0.024
157 244978_at ATCG00740 RPOA, RNA polymerase subunit alpha -0.346 -0.111
158 249808_at AT5G23890 [LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope] -0.336 -0.015
159 252537_at AT3G45710 [Major facilitator superfamily protein] -0.336 0.012