4.0:Information of module
shoot control p35S
In comparison with aerial organ callus inducing medium 24h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009853 photorespiration BP 3.224e-06
GO:0043094 cellular metabolic compound salvage BP 8.754e-06
GO:0045454 cell redox homeostasis BP 1.311e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 3.301e-52
GO:0015979 photosynthesis BP 1.605e-21
GO:0006091 generation of precursor metabolites and ... BP 3.088e-18
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot control p35S		 Log2 signal ratio
aerial organ callus inducing medium 24h
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.827 0.174
2 258201_at AT3G13910 unknown 0.649 0.295
3 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 0.509 0.204
4 260025_at AT1G30070 [SGS domain-containing protein] 0.476 0.065
5 255028_at AT4G09890 unknown 0.401 -0.006
6 246270_at AT4G36500 unknown 0.370 -0.016
7 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.357 0.042
8 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.357 0.226
9 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.354 -0.021
10 261259_at AT1G26660 [Prefoldin chaperone subunit family protein] 0.331 0.248
11 258617_at AT3G03000 [EF hand calcium-binding protein family] 0.307 0.154
12 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.303 0.020
13 253726_at AT4G29430 rps15ae, ribosomal protein S15A E 0.303 0.068
14 247836_at AT5G57860 [Ubiquitin-like superfamily protein] 0.303 0.007
15 247255_at AT5G64780 [Uncharacterised conserved protein UCP009193] 0.291 -0.298
16 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.290 -0.455
17 250353_at AT5G11630 NOXY2, nonresponding to oxylipins 2 0.287 0.054
18 264974_at AT1G27050 [homeobox protein 54 (HB54)] 0.283 -0.007
19 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.281 -0.211
20 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 0.280 0.124
21 262286_at AT1G68585 unknown 0.275 -0.023
22 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C 0.270 -0.123
23 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.269 -0.038
24 252352_at AT3G48185 unknown 0.268 0.029
25 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.261 -0.222
26 260040_at AT1G68765 IDA, INFLORESCENCE DEFICIENT IN ABSCISSION 0.259 0.166
27 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.257 -0.194
28 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor 0.256 0.039
29 254362_at AT4G22160 unknown 0.255 0.052
30 256720_at AT2G34140 [Dof-type zinc finger DNA-binding family protein] 0.252 0.270
31 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] 0.248 0.094
32 248632_at AT5G49010 EMB2812, EMBRYO DEFECTIVE 2812, SLD5, SYNTHETIC LETHALITY WITH DPB11-1 5 0.247 -0.029
33 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 0.247 -0.118
34 253044_at AT4G37290 unknown 0.242 0.662
35 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 0.239 -0.010
36 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.239 0.349
37 265937_at AT2G19610 [RING/U-box superfamily protein] 0.238 -0.098
38 265226_at AT2G28430 unknown 0.237 -0.033
39 254201_at AT4G24130 unknown 0.236 0.062
40 247146_at AT5G65610 unknown 0.236 0.146
41 257081_at AT3G30460 [RING/U-box superfamily protein] 0.233 0.084
42 249822_at AT5G23710 [DNA binding] 0.230 0.125
43 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.230 0.502
44 260622_at AT1G07980 NF-YC10, nuclear factor Y, subunit C10 0.229 0.123
45 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 0.228 -0.078
46 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.227 -0.420
47 264616_at AT2G17740 [Cysteine/Histidine-rich C1 domain family protein] 0.225 0.460
48 260367_at AT1G69760 unknown 0.221 0.137
49 259095_at AT3G05020 ACP, ACYL CARRIER PROTEIN, ACP1, acyl carrier protein 1 0.220 0.064
50 245337_at AT4G16566 HINT4, histidine triad nucleotide-binding 4 0.220 -0.092
51 259822_at AT1G66230 AtMYB20, myb domain protein 20, MYB20, myb domain protein 20 0.219 -0.394
52 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] 0.219 0.224
53 253165_at AT4G35320 unknown 0.217 0.034
54 262828_at AT1G14950 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.214 0.054
55 257517_at AT3G16330 unknown 0.213 0.319
56 263693_at AT1G31200 ATPP2-A9, phloem protein 2-A9, PP2-A9, phloem protein 2-A9 0.213 -0.285
57 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 0.213 0.093
58 252224_at AT3G49860 ARLA1B, ADP-ribosylation factor-like A1B, ATARLA1B, ADP-ribosylation factor-like A1B 0.212 0.006
59 250740_at AT5G05760 ATSED5, ATSYP31, SED5, T-SNARE SED 5, SYP31, syntaxin of plants 31 0.207 0.116
60 261409_at AT1G07640 OBP2, URP3, UAS-TAGGED ROOT PATTERNING3 0.207 0.008
61 248069_at AT5G55650 unknown 0.207 0.066
62 265732_at AT2G01300 unknown 0.205 -0.208
63 265510_at AT2G05630 ATG8D 0.205 0.089
64 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.202 -0.042
65 250722_at AT5G06190 unknown 0.201 -0.009
66 246054_at AT5G08360 unknown 0.201 0.109
67 250734_at AT5G06270 unknown 0.198 0.020
68 252565_at AT3G46000 ADF2, actin depolymerizing factor 2 0.198 0.019
69 246581_at AT1G31760 [SWIB/MDM2 domain superfamily protein] 0.195 -0.062
70 248512_at AT5G50460 [secE/sec61-gamma protein transport protein] 0.193 0.063
71 252222_at AT3G49845 WIH3, WINDHOSE 3 0.190 0.041
72 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 0.190 0.278
73 254656_at AT4G18070 unknown 0.189 0.076
74 245445_at AT4G16750 [Integrase-type DNA-binding superfamily protein] 0.189 0.048
75 250158_at AT5G15190 unknown 0.189 0.041
76 248646_at AT5G49100 unknown 0.188 -0.176
77 253629_at AT4G30450 [glycine-rich protein] 0.188 -0.008
78 267463_at AT2G33845 [Nucleic acid-binding, OB-fold-like protein] 0.188 0.098
79 262438_at AT1G47410 unknown 0.187 -0.181
80 256145_at AT1G48750 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.187 -0.298
81 244985_at ATCG00810 RPL22, ribosomal protein L22 -1.234 -0.203
82 245025_at ATCG00130 ATPF -1.114 -0.243
83 244981_at ATCG00770 RPS8, ribosomal protein S8 -1.106 -0.246
84 244980_at ATCG00760 RPL36, ribosomal protein L36 -1.031 -0.209
85 244966_at ATCG00600 PETG -1.009 -0.119
86 245008_at ATCG00360 YCF3 -0.910 -0.205
87 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.904 -0.688
88 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.898 -0.320
89 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.850 -0.055
90 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.832 -0.233
91 245017_at ATCG00510 PSAI, photsystem I subunit I -0.812 -0.191
92 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.798 -0.330
93 244932_at ATCG01060 PSAC -0.796 -0.158
94 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.784 -0.191
95 244965_at ATCG00590 ORF31 -0.760 -0.053
96 244936_at ATCG01100 NDHA -0.741 -0.132
97 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.733 -0.227
98 244998_at ATCG00180 RPOC1 -0.721 -0.198
99 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.715 -0.161
100 244933_at ATCG01070 NDHE -0.709 -0.214
101 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.706 -0.043
102 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.704 -0.141
103 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.702 -0.138
104 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.693 -0.159
105 245026_at ATCG00140 ATPH -0.657 -0.256
106 245019_at ATCG00530 YCF10 -0.646 -0.127
107 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.639 -0.050
108 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.636 -0.239
109 244934_at ATCG01080 NDHG -0.634 -0.248
110 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.632 -0.175
111 244967_at ATCG00630 PSAJ -0.603 -0.233
112 245015_at ATCG00490 RBCL -0.601 -0.179
113 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.601 -0.143
114 257334_at ATMG01370 ORF111D -0.590 0.086
115 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.584 -0.050
116 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.566 -0.137
117 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.553 -0.128
118 244997_at ATCG00170 RPOC2 -0.551 -0.252
119 245004_at ATCG00300 YCF9 -0.544 -0.055
120 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.538 -0.051
121 245018_at ATCG00520 YCF4 -0.527 -0.239
122 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.503 0.107
123 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.502 -0.088
124 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.502 -0.276
125 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.496 -0.282
126 245014_at ATCG00480 ATPB, ATP synthase subunit beta, PB, ATP synthase subunit beta -0.494 -0.014
127 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.489 -0.270
128 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.486 -0.159
129 244935_at ATCG01090 NDHI -0.464 -0.070
130 245006_at ATCG00340 PSAB -0.464 -0.028
131 255703_at AT4G00040 [Chalcone and stilbene synthase family protein] -0.455 -0.108
132 261845_at AT1G15960 ATNRAMP6, NRAMP6, NRAMP metal ion transporter 6 -0.454 -0.087
133 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.449 -0.016
134 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.437 0.011
135 244962_at ATCG01050 NDHD -0.433 -0.092
136 244976_at ATCG00720 PETB, photosynthetic electron transfer B -0.432 -0.060
137 251347_at AT3G61010 [Ferritin/ribonucleotide reductase-like family protein] -0.425 -0.068
138 252208_at AT3G50380 [INVOLVED IN: protein localization] -0.424 -0.083
139 266971_at AT2G39580 unknown -0.424 -0.081
140 249006_at AT5G44660 unknown -0.418 -0.198
141 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.414 0.025
142 245020_at ATCG00540 PETA, photosynthetic electron transfer A -0.411 -0.064
143 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 -0.405 -0.291
144 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.405 0.044
145 244961_at ATCG01040 YCF5 -0.403 -0.088
146 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 -0.401 -0.064
147 265902_at AT2G25590 [Plant Tudor-like protein] -0.401 -0.179
148 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.387 -0.333
149 257971_at AT3G27530 GC6, golgin candidate 6, MAG4, MAIGO 4 -0.384 -0.066
150 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.381 -0.301
151 245050_at ATCG00070 PSBK, photosystem II reaction center protein K precursor -0.379 -0.042
152 244971_at ATCG00670 CLPP1, CASEINOLYTIC PROTEASE P 1, PCLPP, plastid-encoded CLP P -0.366 -0.096
153 244906_at ATMG00690 ORF240A -0.358 0.061
154 246897_at AT5G25560 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.352 -0.060
155 256734_at AT3G29390 RIK, RS2-interacting KH protein -0.352 -0.127
156 264166_at AT1G65370 [TRAF-like family protein] -0.349 -0.032
157 244978_at ATCG00740 RPOA, RNA polymerase subunit alpha -0.346 -0.075
158 249808_at AT5G23890 [LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope] -0.336 -0.026
159 252537_at AT3G45710 [Major facilitator superfamily protein] -0.336 0.043