4.0:Information of module
roottip hypoxia pSHR
In comparison with Ler KAR1 24h seed help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0048869 cellular developmental process BP 3.685e-04
GO:0030154 cell differentiation BP 1.851e-03
GO:0051704 multi-organism process BP 2.337e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006661 phosphatidylinositol biosynthetic proces... BP 1.185e-05
GO:0046488 phosphatidylinositol metabolic process BP 8.759e-05
GO:0046474 glycerophospholipid biosynthetic process BP 3.587e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
roottip hypoxia pSHR		 Log2 signal ratio
Ler KAR1 24h seed
1 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] 0.950 0.041
2 260565_at AT2G43800 [Actin-binding FH2 (formin homology 2) family protein] 0.827 0.020
3 264437_at AT1G27510 EX2, EXECUTER 2 0.591 -0.011
4 252078_at AT3G51740 IMK2, inflorescence meristem receptor-like kinase 2 0.562 -0.061
5 254207_at AT4G24060 [Dof-type zinc finger DNA-binding family protein] 0.465 -0.013
6 253011_at AT4G37890 EDA40, embryo sac development arrest 40 0.464 0.044
7 245758_at AT1G32240 KAN2, KANADI 2 0.452 -0.005
8 253571_at AT4G31000 [Calmodulin-binding protein] 0.428 -0.103
9 260819_at AT1G06850 AtbZIP52, basic leucine-zipper 52, bZIP52, basic leucine-zipper 52 0.409 0.144
10 255667_at AT4G00240 PLDBETA2, phospholipase D beta 2 0.408 0.001
11 245588_at AT4G15030 unknown 0.406 -0.128
12 247121_at AT5G66010 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.404 0.006
13 259400_at AT1G17750 AtPEPR2, PEP1 RECEPTOR 2, PEPR2, PEP1 receptor 2 0.399 0.031
14 265433_at AT2G20950 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.397 -0.066
15 249404_at AT5G40160 EMB139, EMBRYO DEFECTIVE 139, EMB506, embryo defective 506 0.391 0.008
16 267015_at AT2G39340 AtSAC3A, SAC3A, yeast Sac3 homolog A 0.385 0.019
17 262778_at AT1G13050 unknown 0.380 0.018
18 247567_at AT5G61190 [putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain] 0.354 0.060
19 261333_at AT1G44910 ATPRP40A, pre-mRNA-processing protein 40A, PRP40A, pre-mRNA-processing protein 40A 0.335 -0.048
20 249115_at AT5G43810 AGO10, ARGONAUTE 10, PNH, PINHEAD, ZLL, ZWILLE 0.326 0.008
21 257073_at AT3G19650 [cyclin-related] 0.325 -0.004
22 266627_at AT2G35340 MEE29, maternal effect embryo arrest 29 0.324 -0.052
23 252786_at AT3G42670 CHR38, chromatin remodeling 38, CLSY, CLASSY1, CLSY1, CLASSY 1 0.323 -0.009
24 261382_at AT1G05470 CVP2, COTYLEDON VASCULAR PATTERN 2 0.312 0.102
25 254113_at AT4G24900 TTL, TITAN-like 0.309 0.064
26 258349_at AT3G17609 HYH, HY5-homolog 0.307 0.110
27 262701_at AT1G16480 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.298 0.016
28 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 0.297 0.061
29 252432_at AT3G47680 [DNA binding] 0.297 0.062
30 250487_at AT5G09690 ATMGT7, ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, MGT7, magnesium transporter 7, MRS2-7 0.286 0.049
31 262135_at AT1G78080 AtWIND1, RAP2.4, related to AP2 4, WIND1, wound induced dedifferentiation 1 0.280 0.030
32 252047_at AT3G52490 SMXL3, SMAX1-like 3 0.265 0.004
33 248070_at AT5G55660 [DEK domain-containing chromatin associated protein] 0.253 -0.007
34 247148_at AT5G65670 IAA9, indole-3-acetic acid inducible 9 0.247 0.032
35 261701_at AT1G32750 GTD1, HAC13, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAF01, HAF1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, TAF1, TBP-ASSOCIATED FACTOR 1 0.247 0.001
36 253614_at AT4G30350 SMXL2, SMAX1-like 2 0.244 0.132
37 250872_at AT5G03960 IQD12, IQ-domain 12 0.244 -0.020
38 262563_at AT1G34210 ATSERK2, SERK2, somatic embryogenesis receptor-like kinase 2 0.240 0.023
39 253648_at AT4G29940 PRHA, pathogenesis related homeodomain protein A 0.239 -0.008
40 249644_at AT5G37010 unknown 0.238 0.040
41 248106_at AT5G55100 [SWAP (Suppressor-of-White-APricot)/surp domain-containing protein] 0.238 -0.004
42 251200_at AT3G63010 ATGID1B, GID1B, GA INSENSITIVE DWARF1B 0.238 -0.024
43 252350_at AT3G48190 ATATM, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ATM, ataxia-telangiectasia mutated, PIG1, pcd in male gametogenesis 1 0.236 0.008
44 255760_at AT1G16780 AtVHP2;2, VHP2;2 0.234 0.022
45 264459_at AT1G10160 [non-LTR retrotransposon family (LINE), has a 3.9e-39 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)] 0.232 0.003
46 256394_at AT3G06290 AtSAC3B, SAC3B, yeast Sac3 homolog B 0.231 -0.001
47 246551_at AT5G15070 [Phosphoglycerate mutase-like family protein] 0.231 -0.034
48 263305_at AT2G01930 ATBPC1, BASIC PENTACYSTEINE1, BBR, BPC1, basic pentacysteine1 -1.121 -0.017
49 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.719 -0.019
50 259481_at AT1G18970 GLP4, germin-like protein 4 -0.614 0.042
51 258052_at AT3G16190 [Isochorismatase family protein] -0.601 0.004
52 252046_at AT3G52460 [hydroxyproline-rich glycoprotein family protein] -0.591 0.049
53 245386_at AT4G14010 RALFL32, ralf-like 32 -0.546 -0.063
54 259120_at AT3G02240 GLV4, GOLVEN 4, RGF7, root meristem growth factor 7 -0.535 0.019
55 248763_at AT5G47550 [Cystatin/monellin superfamily protein] -0.463 -0.005
56 250676_at AT5G06320 NHL3, NDR1/HIN1-like 3 -0.454 -0.012
57 257074_at AT3G19660 unknown -0.443 0.037
58 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.439 0.049
59 245305_at AT4G17215 [Pollen Ole e 1 allergen and extensin family protein] -0.428 -0.008
60 254326_at AT4G22610 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.416 0.027
61 261317_at AT1G53030 [Cytochrome C oxidase copper chaperone (COX17)] -0.415 0.003
62 257206_at AT3G16530 [Legume lectin family protein] -0.400 -0.140
63 249729_at AT5G24410 PGL4, 6-phosphogluconolactonase 4 -0.396 -0.014
64 259443_at AT1G02360 [Chitinase family protein] -0.396 -0.001
65 250924_at AT5G03440 unknown -0.384 -0.066
66 255111_at AT4G08780 [Peroxidase superfamily protein] -0.381 0.042
67 261265_at AT1G26800 [RING/U-box superfamily protein] -0.379 0.011
68 257204_at AT3G23805 RALFL24, ralf-like 24 -0.377 0.080
69 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.374 0.248
70 249934_at AT5G22410 RHS18, root hair specific 18 -0.372 0.040
71 254313_at AT4G22460 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.364 0.066
72 263854_at AT2G04430 atnudt5, nudix hydrolase homolog 5, NUDT5, nudix hydrolase homolog 5 -0.358 0.032
73 265852_at AT2G42350 [RING/U-box superfamily protein] -0.356 -0.032
74 262373_at AT1G73120 unknown -0.346 0.070
75 267178_at AT2G37750 unknown -0.340 0.058
76 264842_at AT1G03700 [Uncharacterised protein family (UPF0497)] -0.339 -0.060
77 250923_at AT5G03455 ACR2, ARSENATE REDUCTASE 2, ARATH;CDC25, AtACR2, CDC25 -0.336 -0.000
78 255525_at AT4G02340 [alpha/beta-Hydrolases superfamily protein] -0.335 0.006
79 250800_at AT5G05370 [Cytochrome b-c1 complex, subunit 8 protein] -0.332 0.049
80 261221_at AT1G19960 unknown -0.331 0.060
81 260564_at AT2G43810 LSM6B, SM-like 6B -0.331 0.026
82 251565_at AT3G58190 ASL16, ASYMMETRIC LEAVES 2-LIKE 16, LBD29, lateral organ boundaries-domain 29 -0.330 0.011
83 261019_at AT1G26470 SNS1, SnRK2-substrate 1 -0.324 0.006
84 265008_at AT1G61560 ATMLO6, MILDEW RESISTANCE LOCUS O 6, MLO6, MILDEW RESISTANCE LOCUS O 6 -0.321 0.035
85 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] -0.320 0.123
86 267239_at AT2G02510 [NADH dehydrogenase (ubiquinone)s] -0.314 0.001
87 259852_at AT1G72280 AERO1, endoplasmic reticulum oxidoreductins 1, ERO1, endoplasmic reticulum oxidoreductins 1 -0.313 -0.046
88 259653_at AT1G55240 unknown -0.313 0.183
89 250079_at AT5G16650 [Chaperone DnaJ-domain superfamily protein] -0.307 -0.018
90 255011_at AT4G10040 CYTC-2, cytochrome c-2 -0.304 0.016
91 266017_at AT2G18690 unknown -0.298 0.043
92 255951_at AT1G22050 MUB6, membrane-anchored ubiquitin-fold protein 6 precursor -0.295 0.013
93 246744_at AT5G27760 [Hypoxia-responsive family protein] -0.293 0.016