4.0:Information of module
root control pSCR
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0000041 transition metal ion transport BP 8.176e-10
GO:0009698 phenylpropanoid metabolic process BP 7.302e-09
GO:0009699 phenylpropanoid biosynthetic process BP 1.948e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006820 anion transport BP 3.488e-21
GO:0071705 nitrogen compound transport BP 2.067e-20
GO:0010167 response to nitrate BP 3.238e-20
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root control pSCR		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 0.997 -0.096
2 252988_at AT4G38410 [Dehydrin family protein] 0.703 0.021
3 262339_at AT1G64000 ATWRKY56, WRKY56, WRKY DNA-binding protein 56 0.680 0.035
4 257704_at AT3G12720 ATMYB67, myb domain protein 67, ATY53, MYB67, MYB67, myb domain protein 67 0.679 -0.045
5 255903_at AT1G17950 ATMYB52, MYB DOMAIN PROTEIN 52, BW52, MYB52, myb domain protein 52 0.653 -0.139
6 258631_at AT3G07970 QRT2, QUARTET 2 0.604 0.051
7 245267_at AT4G14060 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.591 -0.065
8 245845_at AT1G26150 AtPERK10, proline-rich extensin-like receptor kinase 10, PERK10, proline-rich extensin-like receptor kinase 10 0.588 0.007
9 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.569 -0.081
10 260091_at AT1G73290 scpl5, serine carboxypeptidase-like 5 0.566 -0.034
11 260535_at AT2G43390 unknown 0.561 -0.122
12 248066_at AT5G55590 QRT1, QUARTET 1 0.544 -0.159
13 259676_at AT1G77730 [Pleckstrin homology (PH) domain superfamily protein] 0.540 -0.039
14 248990_at AT5G45210 [Disease resistance protein (TIR-NBS-LRR class) family] 0.508 -0.033
15 256176_at AT1G51640 ATEXO70G2, exocyst subunit exo70 family protein G2, EXO70G2, exocyst subunit exo70 family protein G2 0.507 -0.076
16 252233_at AT3G49690 ATMYB84, MYB DOMAIN PROTEIN 84, MYB84, myb domain protein 84, RAX3, REGULATOR OF AXILLARY MERISTEMS3 0.500 -0.192
17 261545_at AT1G63530 unknown 0.494 -0.032
18 247967_at AT5G56620 anac099, NAC domain containing protein 99, NAC099, NAC domain containing protein 99 0.493 0.169
19 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.492 0.037
20 249850_at AT5G23240 DJC76, DNA J protein C76 0.491 0.076
21 253240_at AT4G34510 KCS17, 3-ketoacyl-CoA synthase 17 0.489 0.059
22 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] 0.480 0.078
23 247769_at AT5G58910 LAC16, laccase 16 0.480 -0.078
24 267144_at AT2G38110 ATGPAT6, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 6, GPAT6, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 6 0.477 -0.098
25 254188_at AT4G23920 ATUGE2, UDP-GLC 4-EPIMERASE 2, UGE2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 0.474 0.011
26 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.474 0.065
27 247165_at AT5G65790 ATMYB68, MYB DOMAIN PROTEIN 68, MYB68, myb domain protein 68 0.474 -0.101
28 254404_at AT4G21340 B70 0.473 -0.102
29 246477_at AT5G16770 AtMYB9, myb domain protein 9, MYB9, myb domain protein 9 0.471 -0.050
30 252905_at AT4G39720 [VQ motif-containing protein] 0.470 -0.041
31 255807_at AT4G10270 [Wound-responsive family protein] 0.470 -0.027
32 246181_at AT5G20860 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.470 0.080
33 252364_at AT3G48450 [RPM1-interacting protein 4 (RIN4) family protein] 0.464 0.093
34 261385_at AT1G05450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.462 -0.008
35 247959_at AT5G57080 unknown 0.451 0.114
36 256531_at AT1G33320 [Pyridoxal phosphate (PLP)-dependent transferases superfamily protein] 0.451 -0.198
37 263387_at AT2G40160 TBL30 0.445 -0.083
38 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.445 0.091
39 263650_at AT1G04360 [RING/U-box superfamily protein] 0.443 0.055
40 262115_at AT1G02813 unknown 0.442 -0.122
41 262406_at AT1G34670 AtMYB93, myb domain protein 93, MYB93, myb domain protein 93 0.440 0.249
42 253195_at AT4G35420 DRL1, dihydroflavonol 4-reductase-like1, TKPR1, tetraketide alpha-pyrone reductase 1 0.438 -0.036
43 255264_at AT4G05170 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.433 0.053
44 263825_at AT2G40370 LAC5, laccase 5 0.432 -0.055
45 253040_at AT4G37800 XTH7, xyloglucan endotransglucosylase/hydrolase 7 0.431 -0.066
46 249895_at AT5G22500 FAR1, fatty acid reductase 1 0.425 0.238
47 263998_at AT2G22510 [hydroxyproline-rich glycoprotein family protein] 0.425 -0.076
48 259624_at AT1G43020 unknown 0.413 -0.004
49 247231_at AT5G65230 AtMYB53, myb domain protein 53, MYB53, myb domain protein 53 0.412 0.108
50 265685_at AT2G24430 ANAC038, NAC domain containing protein 38, ANAC039, Arabidopsis NAC domain containing protein 39, NAC038, NAC domain containing protein 38 0.410 0.051
51 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.406 0.852
52 254536_at AT4G19720 [Glycosyl hydrolase family protein with chitinase insertion domain] 0.398 0.044
53 249108_at AT5G43690 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.396 -0.137
54 267344_at AT2G44230 unknown 0.393 -0.149
55 266356_at AT2G32300 UCC1, uclacyanin 1 0.392 0.089
56 247632_at AT5G60460 [Preprotein translocase Sec, Sec61-beta subunit protein] 0.390 0.020
57 266900_at AT2G34610 unknown 0.389 -0.539
58 262640_at AT1G62760 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.388 -0.015
59 259423_at AT1G13880 [ELM2 domain-containing protein] 0.387 0.192
60 245728_at AT1G73340 [Cytochrome P450 superfamily protein] 0.386 0.109
61 263481_at AT2G04025 GLV7, GOLVEN 7, RGF3, root meristem growth factor 3 0.386 -0.224
62 265309_at AT2G20290 ATXIG, MYOSIN XI G, XIG, myosin-like protein XIG 0.382 -0.090
63 260643_at AT1G53270 ABCG10, ATP-binding cassette G10 0.382 0.024
64 256621_at AT3G24450 [Heavy metal transport/detoxification superfamily protein ] 0.379 0.030
65 249403_at AT5G40270 [HD domain-containing metal-dependent phosphohydrolase family protein] 0.379 0.128
66 250474_at AT5G10230 ANN7, ANNEXIN 7, ANNAT7, annexin 7 0.378 0.399
67 247797_at AT5G58780 AtcPT5, AtHEPS, cPT5, cis -prenyltransferase 5, HEPS, heptaprenyl diphosphate synthase 0.377 -0.089
68 257428_at AT1G78990 [HXXXD-type acyl-transferase family protein] 0.373 -0.052
69 258620_at AT3G02940 AtMYB107, myb domain protein 107, MYB107, myb domain protein 107 0.369 -0.225
70 263327_at AT2G15300 [Leucine-rich repeat protein kinase family protein] 0.368 -0.128
71 257371_at AT2G47810 NF-YB5, nuclear factor Y, subunit B5 0.368 -0.028
72 251191_at AT3G62590 [alpha/beta-Hydrolases superfamily protein] 0.368 0.007
73 245345_at AT4G16640 [Matrixin family protein] 0.367 0.051
74 267054_at AT2G38370 unknown 0.367 -0.139
75 250182_at AT5G14470 AtGALK2, GALK2, galactokinase 2 0.365 0.098
76 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.363 0.023
77 251792_at AT3G55550 LecRK-S.4, L-type lectin receptor kinase S.4 0.363 -0.112
78 252195_at AT3G50190 unknown 0.362 0.069
79 260582_at AT2G47200 unknown 0.360 -0.052
80 260599_at AT1G55940 CYP708A1, cytochrome P450, family 708, subfamily A, polypeptide 1 0.360 -0.085
81 256492_at AT1G31490 [HXXXD-type acyl-transferase family protein] 0.358 -0.148
82 256366_at AT1G66880 [Protein kinase superfamily protein] 0.358 -0.090
83 266126_at AT2G45040 [Matrixin family protein] 0.357 -0.196
84 256759_at AT3G25640 unknown 0.354 -0.013
85 245612_at AT4G14440 ATECI3, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, ECI3, DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, HCD1, 3-hydroxyacyl-CoA dehydratase 1 0.354 -0.117
86 259433_at AT1G01570 [FUNCTIONS IN: transferase activity, transferring glycosyl groups] 0.352 -0.028
87 250200_at AT5G14130 [Peroxidase superfamily protein] 0.351 0.044
88 259429_at AT1G01600 CYP86A4, cytochrome P450, family 86, subfamily A, polypeptide 4 0.350 -0.071
89 265546_at AT2G28240 [ATP-dependent helicase family protein] 0.349 -0.090
90 253710_at AT4G29230 anac075, NAC domain containing protein 75, NAC075, NAC domain containing protein 75 0.349 -0.094
91 264729_at AT1G22990 HIPP22, heavy metal associated isoprenylated plant protein 22 0.348 0.018
92 251824_at AT3G55090 ABCG16, ATP-binding cassette G16 0.347 -0.382
93 250674_at AT5G07130 LAC13, laccase 13 0.346 -0.172
94 246067_at AT5G19410 ABCG23, ATP-binding cassette G23 0.345 0.034
95 252209_at AT3G50400 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.345 0.133
96 254202_at AT4G24140 [alpha/beta-Hydrolases superfamily protein] 0.341 -0.054
97 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.660 -0.088
98 247070_at AT5G66815 unknown -0.498 0.082
99 260090_at AT1G73310 scpl4, serine carboxypeptidase-like 4 -0.495 0.043
100 252568_at AT3G45410 LecRK-I.3, L-type lectin receptor kinase I.3 -0.434 -0.112
101 267217_at AT2G02610 [Cysteine/Histidine-rich C1 domain family protein] -0.429 0.155
102 251517_at AT3G59370 [Vacuolar calcium-binding protein-related] -0.425 0.026
103 262719_at AT1G43590 unknown -0.422 -0.156
104 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] -0.414 0.058
105 252025_at AT3G52900 unknown -0.413 0.313
106 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 -0.406 0.235
107 261221_at AT1G19960 unknown -0.404 0.019
108 250204_at AT5G13990 ATEXO70C2, exocyst subunit exo70 family protein C2, EXO70C2, exocyst subunit exo70 family protein C2 -0.402 -0.115
109 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.397 0.041
110 260112_at AT1G63310 unknown -0.395 -0.458
111 255160_at AT4G07820 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.391 -0.088
112 253626_at AT4G30640 [RNI-like superfamily protein] -0.387 0.118
113 247729_at AT5G59530 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.384 0.116
114 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.378 0.057
115 248916_at AT5G45840 [Leucine-rich repeat protein kinase family protein] -0.372 -0.054
116 266737_at AT2G47140 AtSDR5, SDR5, short-chain dehydrogenase reductase 5 -0.372 0.067
117 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.365 0.059
118 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.364 0.040
119 252511_at AT3G46280 [protein kinase-related] -0.356 0.010
120 251479_at AT3G59700 ATHLECRK, lectin-receptor kinase, HLECRK, lectin-receptor kinase, LecRK-V.5, L-type lectin receptor kinase V.5, LecRK-V.5, LEGUME-LIKE LECTIN RECEPTOR KINASE-V.5, LECRK1, LECTIN-RECEPTOR KINASE 1 -0.353 0.242
121 246534_at AT5G15890 TBL21, TRICHOME BIREFRINGENCE-LIKE 21 -0.342 -0.247
122 245001_at ATCG00220 PSBM, photosystem II reaction center protein M -0.339 0.364
123 251481_at AT3G59730 LecRK-V.6, L-type lectin receptor kinase V.6 -0.337 -0.043
124 259211_at AT3G09020 [alpha 1,4-glycosyltransferase family protein] -0.336 -0.073
125 262254_at AT1G53920 GLIP5, GDSL-motif lipase 5 -0.334 0.072
126 249126_at AT5G43380 TOPP6, type one serine/threonine protein phosphatase 6 -0.334 0.100
127 257206_at AT3G16530 [Legume lectin family protein] -0.329 0.098
128 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 -0.328 -0.193
129 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 -0.327 0.126
130 265075_at AT1G55450 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.325 -0.056
131 245566_at AT4G14610 [pseudogene] -0.324 0.026
132 250771_at AT5G05400 [LRR and NB-ARC domains-containing disease resistance protein] -0.323 -0.208
133 256563_at AT3G29780 RALFL27, ralf-like 27 -0.317 0.102
134 261256_at AT1G05760 RTM1, restricted tev movement 1 -0.315 0.059
135 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] -0.312 0.174
136 255595_at AT4G01700 [Chitinase family protein] -0.312 -0.051
137 260432_at AT1G68150 ATWRKY9, WRKY9, WRKY DNA-binding protein 9 -0.305 0.089
138 254644_at AT4G18510 CLE2, CLAVATA3/ESR-related 2 -0.303 -0.066
139 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.302 0.066
140 261399_at AT1G79620 [Leucine-rich repeat protein kinase family protein] -0.301 0.302
141 249882_at AT5G22890 STOP2, sensitive to proton rhizotoxicity 2 -0.300 -0.212
142 253569_at AT4G31250 [Leucine-rich repeat protein kinase family protein] -0.298 0.033
143 265582_at AT2G20030 [RING/U-box superfamily protein] -0.298 0.101
144 253613_at AT4G30320 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.298 -0.026
145 246777_at AT5G27420 ATL31, Arabidopsis toxicos en levadura 31, CNI1, carbon/nitrogen insensitive 1 -0.293 0.005
146 254041_at AT4G25830 [Uncharacterised protein family (UPF0497)] -0.292 -0.009
147 251420_at AT3G60490 [Integrase-type DNA-binding superfamily protein] -0.292 0.017
148 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 -0.291 0.014
149 257334_at ATMG01370 ORF111D -0.287 0.162
150 246947_at AT5G25120 CYP71B11, ytochrome p450, family 71, subfamily B, polypeptide 11 -0.286 0.047
151 256141_at AT1G48640 [Transmembrane amino acid transporter family protein] -0.285 -0.004
152 259854_at AT1G72200 [RING/U-box superfamily protein] -0.285 0.034
153 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.285 0.119
154 253243_at AT4G34560 unknown -0.283 -0.052
155 250157_at AT5G15180 [Peroxidase superfamily protein] -0.282 -0.099
156 246807_at AT5G27100 ATGLR2.1, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, GLR2.1, glutamate receptor 2.1 -0.280 0.097
157 258178_at AT3G21680 unknown -0.280 0.021
158 257671_at AT3G20450 [B-cell receptor-associated protein 31-like ] -0.279 -0.293
159 256097_at AT1G13670 unknown -0.276 -0.581
160 264434_at AT1G10340 [Ankyrin repeat family protein] -0.275 0.053
161 259774_at AT1G29520 [AWPM-19-like family protein] -0.274 -0.024
162 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.274 0.249
163 252098_at AT3G51330 [Eukaryotic aspartyl protease family protein] -0.271 0.120
164 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 -0.269 0.433
165 251832_at AT3G55150 ATEXO70H1, exocyst subunit exo70 family protein H1, EXO70H1, exocyst subunit exo70 family protein H1 -0.269 -0.239
166 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 -0.269 -0.063
167 259328_at AT3G16440 ATMLP-300B, myrosinase-binding protein-like protein-300B, MEE36, maternal effect embryo arrest 36, MLP-300B, myrosinase-binding protein-like protein-300B -0.269 0.069
168 260332_at AT1G70470 unknown -0.269 -0.078
169 254418_at AT4G21480 STP12, sugar transporter protein 12 -0.268 -0.031
170 262638_at AT1G06650 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.268 -0.055
171 258209_at AT3G14060 unknown -0.267 0.071
172 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] -0.266 0.086
173 259674_at AT1G77700 [Pathogenesis-related thaumatin superfamily protein] -0.265 0.064
174 259479_at AT1G19020 unknown -0.263 -0.010
175 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 -0.261 0.033
176 266140_at AT2G28120 [Major facilitator superfamily protein] -0.261 0.068
177 249766_at AT5G24070 [Peroxidase superfamily protein] -0.261 0.108
178 253454_at AT4G31875 unknown -0.260 0.213
179 261586_at AT1G01640 [BTB/POZ domain-containing protein] -0.260 0.003
180 256283_at AT3G12540 unknown -0.259 0.050
181 250205_at AT5G14020 [Endosomal targeting BRO1-like domain-containing protein] -0.259 -0.167
182 260568_at AT2G43570 CHI, chitinase, putative -0.259 0.036
183 254037_at AT4G25760 ATGDU2, glutamine dumper 2, GDU2, glutamine dumper 2 -0.259 0.032
184 261927_at AT1G22500 AtATL15, Arabidopsis thaliana Arabidopsis toxicos en levadura 15, ATL15, Arabidopsis toxicos en levadura 15 -0.258 0.119
185 251652_at AT3G57380 [Glycosyltransferase family 61 protein] -0.258 -0.088
186 260547_at AT2G43550 [Scorpion toxin-like knottin superfamily protein] -0.257 -0.065
187 256334_at AT1G72125 AtNPF5.13, NPF5.13, NRT1/ PTR family 5.13 -0.253 -0.122
188 254092_at AT4G25090 [Riboflavin synthase-like superfamily protein] -0.253 0.080
189 259134_at AT3G05390 unknown -0.253 -0.118
190 256664_at AT3G12040 [DNA-3-methyladenine glycosylase (MAG)] -0.252 0.061
191 267385_at AT2G44380 [Cysteine/Histidine-rich C1 domain family protein] -0.251 0.104