4.0:Information of module
se-1
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006355 regulation of transcription, DNA-templat... BP 1.483e-04
GO:1903506 regulation of nucleic acid-templated tra... BP 1.483e-04
GO:2001141 regulation of RNA biosynthetic process BP 1.483e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0072527 pyrimidine-containing compound metabolic... BP 1.567e-04
GO:0009218 pyrimidine ribonucleotide metabolic proc... BP 1.892e-04
GO:0009220 pyrimidine ribonucleotide biosynthetic p... BP 1.892e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
se-1		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 260556_at AT2G43620 [Chitinase family protein] 0.375 0.098
2 262662_at AT1G13920 [Remorin family protein] 0.354 0.122
3 264751_at AT1G23020 ATFRO3, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 0.342 -0.026
4 259423_at AT1G13880 [ELM2 domain-containing protein] 0.341 0.192
5 260334_at AT1G70510 ATK1, ARABIDOPSIS THALIANA KN 1, KNAT2, KNOTTED-like from Arabidopsis thaliana 2 0.338 0.272
6 261261_at AT1G26730 [EXS (ERD1/XPR1/SYG1) family protein] 0.321 -0.032
7 260557_at AT2G43610 [Chitinase family protein] 0.313 0.108
8 266555_at AT2G46270 GBF3, G-box binding factor 3 0.297 0.038
9 247118_at AT5G65890 ACR1, ACT domain repeat 1 0.292 -0.082
10 251512_at AT3G59190 [F-box/RNI-like superfamily protein] 0.291 -0.207
11 266452_at AT2G43320 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.290 0.009
12 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.290 0.056
13 265680_at AT2G32150 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.290 -0.081
14 249362_at AT5G40550 AtSGF29b, SGF29b, SaGa associated Factor 29 b 0.279 0.097
15 246347_at AT3G56830 unknown 0.273 -0.080
16 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] 0.271 -0.058
17 261120_at AT1G75410 BLH3, BEL1-like homeodomain 3 0.267 0.082
18 266313_at AT2G26980 CIPK3, CBL-interacting protein kinase 3, SnRK3.17, SNF1-RELATED PROTEIN KINASE 3.17 0.256 0.080
19 245722_at AT1G73430 [sec34-like family protein] 0.256 0.160
20 246254_at AT4G36450 ATMPK14, mitogen-activated protein kinase 14, MPK14, MPK14, mitogen-activated protein kinase 14 0.253 0.003
21 254201_at AT4G24130 unknown 0.251 0.120
22 248240_at AT5G53950 ANAC098, Arabidopsis NAC domain containing protein 98, ATCUC2, CUP-SHAPED COTYLEDON 2, CUC2, CUP-SHAPED COTYLEDON 2 0.249 0.017
23 254667_at AT4G18280 [glycine-rich cell wall protein-related] 0.249 0.149
24 253689_at AT4G29770 unknown 0.243 0.046
25 264408_at AT1G10240 FRS11, FAR1-related sequence 11 0.239 0.051
26 256284_at AT3G12530 PSF2 0.235 0.018
27 265967_at AT2G37450 UMAMIT13, Usually multiple acids move in and out Transporters 13 0.234 -0.045
28 254232_at AT4G23600 CORI3, CORONATINE INDUCED 1, JR2, JASMONIC ACID RESPONSIVE 2 0.225 -0.344
29 255766_at AT1G16750 unknown 0.222 0.025
30 248276_at AT5G53550 ATYSL3, YELLOW STRIPE LIKE 3, YSL3, YELLOW STRIPE like 3 0.221 -0.026
31 250013_at AT5G18040 unknown 0.218 0.066
32 251928_at AT3G53980 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.217 0.393
33 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.215 -0.311
34 252353_at AT3G48200 unknown 0.213 -0.141
35 254231_at AT4G23810 ATWRKY53, WRKY53 0.211 0.017
36 251176_at AT3G63380 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 0.209 0.023
37 247695_at AT5G59710 AtVIP2, NOT2b, Negative on TATA less2b, VIP2, VIRE2 interacting protein 2 0.207 -0.005
38 251560_at AT3G57920 SPL15, squamosa promoter binding protein-like 15 0.203 0.012
39 266606_at AT2G46310 CRF5, cytokinin response factor 5 0.203 0.041
40 247903_at AT5G57340 unknown 0.198 -0.086
41 247055_at AT5G66740 unknown 0.194 -0.092
42 265536_at AT2G15880 [Leucine-rich repeat (LRR) family protein] 0.193 0.330
43 264287_at AT1G61930 unknown 0.192 -0.119
44 267047_at AT2G34370 [Pentatricopeptide repeat (PPR) superfamily protein] 0.191 -0.026
45 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.984 0.123
46 254551_at AT4G19840 ATPP2-A1, phloem protein 2-A1, ATPP2A-1, phloem protein 2-A1, PP2-A1, phloem protein 2-A1 -0.919 0.151
47 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 -0.626 0.039
48 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR -0.598 0.012
49 261807_at AT1G30515 unknown -0.488 -0.103
50 257673_at AT3G20370 [TRAF-like family protein] -0.428 -0.158
51 262831_at AT1G14730 [Cytochrome b561/ferric reductase transmembrane protein family] -0.395 0.147
52 265611_at AT2G25510 unknown -0.383 0.007
53 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.313 -0.055
54 260461_at AT1G10980 [Lung seven transmembrane receptor family protein] -0.300 -0.013
55 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 -0.294 0.074
56 256497_at AT1G31580 CXC750, ECS1 -0.271 -0.047
57 260904_at AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 -0.262 0.032
58 252659_at AT3G44430 unknown -0.260 -0.070
59 257288_at AT3G29670 PMAT2, phenolic glucoside malonyltransferase 2 -0.257 -0.155
60 256150_at AT1G55120 AtcwINV3, 6-fructan exohydrolase, ATFRUCT5, beta-fructofuranosidase 5, FRUCT5, beta-fructofuranosidase 5 -0.250 0.224
61 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 -0.246 -0.040
62 262704_at AT1G16530 ASL9, ASYMMETRIC LEAVES 2-like 9, LBD3, LOB DOMAIN-CONTAINING PROTEIN 3 -0.230 -0.010
63 248592_at AT5G49280 [hydroxyproline-rich glycoprotein family protein] -0.228 -0.024
64 258170_at AT3G21600 [Senescence/dehydration-associated protein-related] -0.228 0.107
65 267371_at AT2G44510 [CDK inhibitor P21 binding protein] -0.221 0.090
66 261596_at AT1G33080 [MATE efflux family protein] -0.219 -0.075
67 247282_at AT5G64240 AtMC3, metacaspase 3, AtMCP1a, metacaspase 1a, MC3, metacaspase 3, MCP1a, metacaspase 1a -0.216 0.029
68 248329_at AT5G52780 unknown -0.209 -0.039
69 247827_at AT5G58500 LSH5, LIGHT SENSITIVE HYPOCOTYLS 5 -0.207 -0.119
70 254362_at AT4G22160 unknown -0.205 -0.133
71 254737_at AT4G13840 CER26, ECERIFERUM 26 -0.197 0.140
72 263840_at AT2G36885 unknown -0.196 0.178
73 257357_at AT2G41050 [PQ-loop repeat family protein / transmembrane family protein] -0.185 0.116
74 264708_at AT1G09740 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.184 0.037
75 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.181 -0.189
76 255059_at AT4G09420 [Disease resistance protein (TIR-NBS class)] -0.178 -0.382
77 252378_at AT3G47570 [Leucine-rich repeat protein kinase family protein] -0.178 0.024
78 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier -0.173 -0.155
79 260150_at AT1G52820 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.170 -0.002
80 256697_at AT3G20660 AtOCT4, organic cation/carnitine transporter4, OCT4, organic cation/carnitine transporter4 -0.169 -0.030
81 263868_at AT2G36840 ACR10, ACT domain repeats 10 -0.164 -0.361
82 255621_at AT4G01390 [TRAF-like family protein] -0.164 0.011
83 264826_at AT1G03410 2A6 -0.163 -0.139
84 246412_at AT5G17530 [phosphoglucosamine mutase family protein] -0.162 0.120
85 258619_at AT3G02780 IDI2, ATISOPENTENYL DIPHOSPHE ISOMERASE 2, IPIAT1, IPP2, isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 -0.160 0.249
86 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 -0.155 -0.026
87 257054_at AT3G15353 ATMT3, MT3, metallothionein 3 -0.152 0.061