4.0:Information of module
pif4pif5 mut dark
In comparison with 2d dark-grown pif1pif3pif4pif5 (pifq) mutant help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0046148 pigment biosynthetic process BP 7.486e-10
GO:0042440 pigment metabolic process BP 1.453e-08
GO:0015979 photosynthesis BP 2.992e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010017 red or far-red light signaling pathway BP 7.210e-04
GO:0071489 cellular response to red or far red ligh... BP 7.210e-04
GO:0006464 cellular protein modification process BP 1.132e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pif4pif5 mut dark		 Log2 signal ratio
2d dark-grown pif1pif3pif4pif5 (pifq) mutant
1 248683_at AT5G48490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.477 0.735
2 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) 0.347 -0.155
3 256497_at AT1G31580 CXC750, ECS1 0.294 0.887
4 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 0.256 0.139
5 266899_at AT2G34620 [Mitochondrial transcription termination factor family protein] 0.254 0.705
6 246783_at AT5G27360 SFP2 0.195 0.477
7 264037_at AT2G03750 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.193 0.492
8 259791_at AT1G29700 [Metallo-hydrolase/oxidoreductase superfamily protein] 0.191 0.399
9 258490_at AT3G02670 [Glycine-rich protein family] 0.189 0.365
10 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 0.188 0.343
11 248807_at AT5G47500 PME5, pectin methylesterase 5 0.182 0.174
12 260041_at AT1G68780 [RNI-like superfamily protein] 0.174 0.156
13 263287_at AT2G36145 unknown 0.173 0.177
14 251827_at AT3G55120 A11, AtCHI, CFI, CHALCONE FLAVANONE ISOMERASE, CHI, chalcone isomerase, TT5, TRANSPARENT TESTA 5 0.156 0.316
15 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -0.893 -0.397
16 249675_at AT5G35940 [Mannose-binding lectin superfamily protein] -0.237 0.152
17 266851_at AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 -0.219 -0.046
18 256702_at AT3G30380 [alpha/beta-Hydrolases superfamily protein] -0.198 0.011
19 265477_at AT2G46480 GAUT2, galacturonosyltransferase 2, LGT2, GALACTURONOSYLTRANSFERASE 2 -0.188 0.058
20 262666_at AT1G14080 ATFUT6, FUT6, fucosyltransferase 6 -0.182 -0.048
21 251291_at AT3G61900 SAUR33, SMALL AUXIN UPREGULATED RNA 33 -0.176 -0.070
22 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 -0.173 -0.248
23 263580_at AT2G17140 [Pentatricopeptide repeat (PPR) superfamily protein] -0.170 0.008
24 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.167 -0.536
25 264571_at AT1G05330 unknown -0.165 -0.035
26 248674_at AT5G48800 [Phototropic-responsive NPH3 family protein] -0.159 -0.230
27 253787_at AT4G28670 [FUNCTIONS IN: kinase activity] -0.156 0.039