4.0:Information of module
ubc13A-es
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 7.066e-10
GO:0016070 RNA metabolic process BP 1.714e-06
GO:0015979 photosynthesis BP 6.220e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043436 oxoacid metabolic process BP 7.495e-09
GO:0006082 organic acid metabolic process BP 8.262e-09
GO:0019752 carboxylic acid metabolic process BP 1.142e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ubc13A-es		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 260813_at AT1G43700 SUE3, sulphate utilization efficiency 3, VIP1, VIRE2-interacting protein 1 0.323 0.638
2 244998_at ATCG00180 RPOC1 0.244 0.197
3 263549_at AT2G21650 ATRL2, ARABIDOPSIS RAD-LIKE 2, MEE3, MATERNAL EFFECT EMBRYO ARREST 3, RSM1, RADIALIS-LIKE SANT/MYB 1 0.235 0.028
4 245047_at ATCG00020 PSBA, photosystem II reaction center protein A 0.225 0.045
5 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H 0.222 0.496
6 267085_at AT2G32620 ATCSLB02, cellulose synthase-like B, ATCSLB2, CELLULOSE SYNTHASE LIKE B2, CSLB02, CELLULOSE SYNTHASE LIKE B2, CSLB02, cellulose synthase-like B 0.209 -0.107
7 255957_at AT1G22160 unknown 0.202 -0.024
8 244995_at ATCG00150 ATPI 0.199 0.482
9 266611_at AT2G14960 GH3.1 0.198 0.083
10 253182_at AT4G35190 LOG5, LONELY GUY 5 0.197 0.204
11 244961_at ATCG01040 YCF5 0.196 -0.018
12 255252_at AT4G04990 unknown 0.188 0.015
13 261428_at AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 0.187 0.053
14 245024_at ATCG00120 ATPA, ATP synthase subunit alpha 0.184 0.064
15 244903_at ATMG00660 ORF149 0.183 -0.091
16 244999_at ATCG00190 RPOB, RNA polymerase subunit beta 0.181 0.070
17 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.181 0.073
18 257274_at AT3G14510 [Polyprenyl synthetase family protein] 0.177 -0.181
19 260007_at AT1G67870 [glycine-rich protein] 0.173 -0.079
20 244971_at ATCG00670 CLPP1, CASEINOLYTIC PROTEASE P 1, PCLPP, plastid-encoded CLP P 0.172 0.095
21 261574_at AT1G01190 CYP78A8, cytochrome P450, family 78, subfamily A, polypeptide 8 0.164 0.027
22 245006_at ATCG00340 PSAB 0.161 0.626
23 264598_at AT1G04610 YUC3, YUCCA 3 0.160 0.323
24 245026_at ATCG00140 ATPH 0.158 0.007
25 265267_at AT2G42920 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.156 0.086
26 253495_at AT4G31850 PGR3, proton gradient regulation 3 0.156 -0.063
27 245947_at AT5G19530 ACL5, ACAULIS 5 0.154 0.215
28 250828_at AT5G05250 unknown 0.149 -0.076
29 267197_at AT2G30960 unknown 0.140 -0.066
30 246891_at AT5G25490 [Ran BP2/NZF zinc finger-like superfamily protein] 0.139 0.035
31 250262_at AT5G13410 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] 0.134 -0.135
32 263909_at AT2G36490 AtROS1, DML1, demeter-like 1, ROS1, REPRESSOR OF SILENCING1 0.130 0.131
33 249986_at AT5G18460 unknown 0.122 0.051
34 247239_at AT5G64640 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.122 0.050
35 245499_at AT4G16480 ATINT4, INT4, inositol transporter 4 0.121 0.147
36 244913_at ATMG00840 ORF121B 0.121 0.054
37 257541_at AT3G25950 [TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein] 0.121 -0.009
38 254034_at AT4G25960 ABCB2, ATP-binding cassette B2, PGP2, P-glycoprotein 2 0.119 -0.125
39 253158_at AT4G35780 STY17, serine/threonine/tyrosine kinase 17 0.119 -0.017
40 264481_at AT1G77200 [Integrase-type DNA-binding superfamily protein] 0.118 -0.161
41 263164_at AT1G03070 AtLFG4, LFG4, LIFEGUARD 4 0.118 0.361
42 263043_at AT1G23350 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.115 0.004
43 264788_at AT2G17880 DJC24, DNA J protein C24 0.114 -0.116
44 251940_at AT3G53450 LOG4, LONELY GUY 4 0.112 0.287
45 258603_at AT3G02990 ATHSFA1E, heat shock transcription factor A1E, HSFA1E, heat shock transcription factor A1E 0.112 0.034
46 257421_at AT1G12030 unknown 0.111 0.108
47 264573_at AT1G05310 [Pectin lyase-like superfamily protein] 0.109 0.066
48 261003_at AT1G26500 [Pentatricopeptide repeat (PPR) superfamily protein] 0.109 0.024
49 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] 0.108 0.064
50 262969_at AT1G75710 [C2H2-like zinc finger protein] 0.108 0.024
51 246792_at AT5G27290 unknown 0.108 -0.051
52 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 0.106 0.093
53 246329_at AT3G43610 [Spc97 / Spc98 family of spindle pole body (SBP) component] 0.104 -0.096
54 255374_at AT4G03770 [gypsy-like retrotransposon family, has a 2.8e-206 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays)] 0.104 -0.112
55 245486_x_at AT4G16240 unknown 0.103 0.020
56 260486_at AT1G51550 [Kelch repeat-containing F-box family protein] 0.103 0.147
57 261331_at AT1G44935 SADHU9-1, sadhu non-coding retrotransposon 9-1 0.103 0.170
58 248350_at AT5G52160 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.101 0.048
59 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 -0.488 -0.254
60 255883_at AT1G20270 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.451 -0.113
61 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 -0.432 0.081
62 264931_at AT1G60590 [Pectin lyase-like superfamily protein] -0.267 -0.009
63 250798_at AT5G05340 PRX52, peroxidase 52 -0.254 0.029
64 257540_at AT3G21520 AtDMP1, Arabidopsis thaliana DUF679 domain membrane protein 1, DMP1, DUF679 domain membrane protein 1 -0.242 -0.118
65 259251_at AT3G07600 [Heavy metal transport/detoxification superfamily protein ] -0.234 -0.006
66 254384_at AT4G21870 [HSP20-like chaperones superfamily protein] -0.224 0.028
67 265796_at AT2G35730 [Heavy metal transport/detoxification superfamily protein ] -0.214 -0.024
68 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 -0.208 -0.060
69 257720_at AT3G18450 [PLAC8 family protein] -0.207 -0.096
70 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 -0.205 0.058
71 254743_at AT4G13420 ATHAK5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, HAK5, high affinity K+ transporter 5 -0.201 -0.161
72 246912_at AT5G25820 [Exostosin family protein] -0.201 -0.110
73 250702_at AT5G06730 [Peroxidase superfamily protein] -0.194 -0.134
74 256522_at AT1G66160 ATCMPG1, CMPG1, CYS, MET, PRO, and GLY protein 1 -0.189 -0.106
75 248130_at AT5G54790 unknown -0.188 -0.150
76 249108_at AT5G43690 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.185 -0.137
77 247899_at AT5G57345 unknown -0.184 0.023
78 260051_at AT1G78210 [alpha/beta-Hydrolases superfamily protein] -0.178 0.123
79 251405_at AT3G60330 AHA7, H(+)-ATPase 7, HA7, H(+)-ATPase 7 -0.177 -0.057
80 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 -0.177 0.198
81 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 -0.173 -0.075
82 254912_at AT4G11230 [Riboflavin synthase-like superfamily protein] -0.169 0.037
83 252510_at AT3G46270 [receptor protein kinase-related] -0.165 -0.008
84 247314_at AT5G64000 ATSAL2, SAL2 -0.159 -0.058
85 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana -0.159 0.082
86 255046_at AT4G09650 ATPD, ATP synthase delta-subunit gene, PDE332, PIGMENT DEFECTIVE 332 -0.153 -0.101
87 254914_at AT4G11290 [Peroxidase superfamily protein] -0.152 0.037
88 265279_at AT2G28460 [Cysteine/Histidine-rich C1 domain family protein] -0.152 0.020
89 251884_at AT3G54150 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.152 0.112
90 265260_at AT2G43000 ANAC042, NAC domain containing protein 42, JUB1, JUNGBRUNNEN 1, NAC042, NAC domain containing protein 42 -0.150 -0.237
91 252859_at AT4G39780 [Integrase-type DNA-binding superfamily protein] -0.149 0.005
92 248537_at AT5G50100 [Putative thiol-disulphide oxidoreductase DCC] -0.147 -0.071
93 248931_at AT5G46040 [Major facilitator superfamily protein] -0.147 0.044
94 258477_at AT3G02680 ATNBS1, NBS1, nijmegen breakage syndrome 1 -0.143 0.177
95 250323_at AT5G12880 [proline-rich family protein] -0.143 0.064
96 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 -0.143 -0.049
97 256788_at AT3G13730 CYP90D1, cytochrome P450, family 90, subfamily D, polypeptide 1 -0.140 -0.017
98 267526_at AT2G30570 PSBW, photosystem II reaction center W -0.139 -0.003
99 262748_at AT1G28610 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.137 -0.057
100 249773_at AT5G24140 SQP2, squalene monooxygenase 2 -0.135 -0.007
101 266123_at AT2G45180 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.134 -0.067
102 262047_at AT1G80160 GLYI7, glyoxylase I 7 -0.134 0.046
103 247670_at AT5G60190 [Cysteine proteinases superfamily protein] -0.134 -0.137
104 250603_at AT5G07820 [Plant calmodulin-binding protein-related] -0.134 0.129
105 252395_at AT3G47950 AHA4, H(+)-ATPase 4, HA4, H(+)-ATPase 4 -0.133 -0.018
106 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] -0.130 -0.300
107 245019_at ATCG00530 YCF10 -0.129 0.282
108 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.129 0.022
109 252403_at AT3G48080 [alpha/beta-Hydrolases superfamily protein] -0.128 0.059
110 250683_x_at AT5G06640 EXT10, extensin 10 -0.128 0.088
111 262305_at AT1G70950 [TPX2 (targeting protein for Xklp2) protein family] -0.126 -0.045
112 253323_at AT4G33920 APD5, Arabidopsis Pp2c clade D 5 -0.126 0.151
113 258342_at AT3G22800 [Leucine-rich repeat (LRR) family protein] -0.126 0.012
114 260060_at AT1G73680 ALPHA DOX2, alpha dioxygenase, alpha-DOX2, alpha-dioxygenase 2 -0.123 0.061
115 247998_at AT5G56200 [C2H2 type zinc finger transcription factor family] -0.121 -0.116