4.0:Information of module
Laer pretreat GA Flg22 0h
In comparison with aerial organ callus inducing medium 48 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006914 autophagy BP 1.358e-09
GO:0006950 response to stress BP 2.730e-09
GO:0009628 response to abiotic stimulus BP 1.697e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 9.735e-09
GO:0044763 single-organism cellular process BP 2.764e-05
GO:0006325 chromatin organization BP 2.023e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Laer pretreat GA Flg22 0h		 Log2 signal ratio
aerial organ callus inducing medium 48 h
1 259036_at AT3G09220 LAC7, laccase 7 0.704 -0.188
2 259316_at AT3G01175 unknown 0.686 -0.096
3 260492_at AT2G41850 ADPG2, ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, PGAZAT, polygalacturonase abscission zone A. thaliana 0.674 1.156
4 253060_at AT4G37710 [VQ motif-containing protein] 0.654 0.237
5 266232_at AT2G02310 AtPP2-B6, phloem protein 2-B6, PP2-B6, phloem protein 2-B6 0.615 -0.034
6 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 0.597 0.587
7 264425_at AT1G61750 [Receptor-like protein kinase-related family protein] 0.569 -0.020
8 267276_at AT2G30130 ASL5, LBD12, PCK1, PEACOCK 1 0.567 0.243
9 265658_at AT2G13810 ALD1, AGD2-like defense response protein 1, AtALD1, EDTS5, eds two suppressor 5 0.543 -0.033
10 249154_at AT5G43410 [Integrase-type DNA-binding superfamily protein] 0.536 -0.037
11 265342_at AT2G18300 HBI1, HOMOLOG OF BEE2 INTERACTING WITH IBH 1 0.535 -0.245
12 264543_at AT1G55790 [FUNCTIONS IN: metal ion binding] 0.533 0.066
13 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 0.517 0.271
14 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 0.507 0.067
15 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.482 0.136
16 256762_at AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 0.467 0.151
17 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.458 0.244
18 251281_at AT3G61640 AGP20, arabinogalactan protein 20, AtAGP20, Arabinogalactan protein 20 0.455 -0.126
19 261814_at AT1G08310 [alpha/beta-Hydrolases superfamily protein] 0.444 -0.033
20 267026_at AT2G38340 DREB19, dehydration response element-binding protein 19 0.443 0.276
21 261278_at AT1G05800 DGL, DONGLE 0.442 -0.024
22 266271_at AT2G29440 ATGSTU6, glutathione S-transferase tau 6, GST24, GLUTATHIONE S-TRANSFERASE 24, GSTU6, glutathione S-transferase tau 6 0.437 0.547
23 253322_at AT4G33980 unknown 0.436 0.328
24 259251_at AT3G07600 [Heavy metal transport/detoxification superfamily protein ] 0.434 0.114
25 247104_at AT5G66620 DAR6, DA1-related protein 6 0.433 0.010
26 264301_at AT1G78780 [pathogenesis-related family protein] 0.432 0.169
27 262148_at AT1G52560 [HSP20-like chaperones superfamily protein] 0.432 -0.050
28 249893_at AT5G22555 unknown 0.430 -0.048
29 258796_at AT3G04630 WDL1, WVD2-like 1 0.416 -0.270
30 253259_at AT4G34410 RRTF1, redox responsive transcription factor 1 0.415 -0.534
31 255811_at AT4G10250 ATHSP22.0 0.404 0.003
32 261700_at AT1G32690 unknown 0.382 0.165
33 266455_at AT2G22760 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.376 -0.064
34 259442_at AT1G02310 MAN1, endo-beta-mannanase 1 0.367 -0.065
35 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 0.366 0.861
36 259780_at AT1G29630 [5'-3' exonuclease family protein] 0.365 -0.049
37 265723_at AT2G32140 [transmembrane receptors] 0.364 0.007
38 253100_at AT4G37400 CYP81F3, cytochrome P450, family 81, subfamily F, polypeptide 3 0.358 0.201
39 252537_at AT3G45710 [Major facilitator superfamily protein] 0.356 -0.159
40 266132_at AT2G45130 ATSPX3, ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX3, SPX domain gene 3 0.355 -0.154
41 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 0.350 0.569
42 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 0.349 0.013
43 260179_at AT1G70690 HWI1, HOPW1-1-INDUCED GENE1, PDLP5, PLASMODESMATA-LOCATED PROTEIN 5 0.348 0.313
44 253884_at AT4G27670 HSP21, heat shock protein 21 0.342 -0.038
45 260755_at AT1G48980 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.338 -0.075
46 260706_at AT1G32350 AOX1D, alternative oxidase 1D 0.335 0.343
47 261109_at AT1G75450 ATCKX5, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, ATCKX6, CYTOKININ OXIDASE 6, CKX5, cytokinin oxidase 5 0.335 0.333
48 260023_at AT1G30040 ATGA2OX2, gibberellin 2-oxidase, GA2OX2, gibberellin 2-oxidase, GA2OX2, GIBBERELLIN 2-OXIDASE 2 0.331 0.222
49 251494_at AT3G59350 [Protein kinase superfamily protein] 0.326 -0.010
50 247208_at AT5G64870 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 0.326 -0.037
51 265732_at AT2G01300 unknown 0.325 -0.215
52 252374_at AT3G48100 ARR5, response regulator 5, ATRR2, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, IBC6, INDUCED BY CYTOKININ 6, RR5, response regulator 5 0.322 -0.274
53 264753_at AT1G61490 [S-locus lectin protein kinase family protein] 0.317 0.092
54 264832_at AT1G03660 [Ankyrin-repeat containing protein] 0.315 -0.116
55 259410_at AT1G13340 [Regulator of Vps4 activity in the MVB pathway protein] 0.311 0.583
56 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.310 -0.395
57 249836_at AT5G23420 HMGB6, high-mobility group box 6 0.306 0.051
58 255874_at AT2G40550 ETG1, E2F target gene 1 0.306 -0.115
59 259040_at AT3G09270 ATGSTU8, glutathione S-transferase TAU 8, GSTU8, glutathione S-transferase TAU 8 0.305 0.347
60 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.304 -0.046
61 252200_at AT3G50280 [HXXXD-type acyl-transferase family protein] 0.295 0.125
62 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 0.287 -0.112
63 256833_at AT3G22910 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 0.284 0.113
64 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] 0.283 -0.098
65 249174_at AT5G42900 COR27, cold regulated gene 27 0.280 0.230
66 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.278 -0.040
67 248410_at AT5G51570 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 0.273 0.062
68 259576_at AT1G35330 [RING/U-box superfamily protein] 0.270 -0.058
69 253799_at AT4G28140 [Integrase-type DNA-binding superfamily protein] 0.268 -0.151
70 247691_at AT5G59720 HSP18.2, heat shock protein 18.2 0.265 -0.055
71 260917_at AT1G02700 unknown 0.260 -0.036
72 247431_at AT5G62520 SRO5, similar to RCD one 5 0.245 0.149
73 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.242 0.007
74 264978_at AT1G27120 [Galactosyltransferase family protein] 0.241 -0.382
75 252076_at AT3G51660 [Tautomerase/MIF superfamily protein] 0.241 0.377
76 250024_at AT5G18270 ANAC087, Arabidopsis NAC domain containing protein 87 0.240 0.526
77 247427_at AT5G62580 [ARM repeat superfamily protein] 0.239 -0.037
78 261838_at AT1G16030 Hsp70b, heat shock protein 70B 0.239 0.023
79 262061_at AT1G80110 ATPP2-B11, phloem protein 2-B11, PP2-B11, phloem protein 2-B11 0.239 0.261
80 266421_at AT2G38540 ATLTP1, ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, LP1, lipid transfer protein 1, LTP1, LIPID TRANSFER PROTEIN 1 -0.958 -0.025
81 263709_at AT1G09310 unknown -0.839 0.021
82 254785_at AT4G12730 FLA2, FASCICLIN-like arabinogalactan 2 -0.673 0.001
83 255604_at AT4G01080 TBL26, TRICHOME BIREFRINGENCE-LIKE 26 -0.664 -0.360
84 260267_at AT1G68530 CER6, ECERIFERUM 6, CUT1, CUTICULAR 1, G2, KCS6, 3-ketoacyl-CoA synthase 6, POP1, POLLEN-PISTIL INCOMPATIBILITY 1 -0.662 0.010
85 259592_at AT1G27950 LTPG1, glycosylphosphatidylinositol-anchored lipid protein transfer 1 -0.641 -0.019
86 259430_at AT1G01610 ATGPAT4, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 4, GPAT4, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 4 -0.638 -0.066
87 250832_at AT5G04950 ATNAS1, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, NAS1, nicotianamine synthase 1 -0.636 -0.527
88 263664_at AT1G04250 AXR3, AUXIN RESISTANT 3, IAA17, indole-3-acetic acid inducible 17 -0.630 0.182
89 260140_at AT1G66390 ATMYB90, MYB90, myb domain protein 90, PAP2, PRODUCTION OF ANTHOCYANIN PIGMENT 2 -0.623 -0.050
90 262281_at AT1G68570 AtNPF3.1, NPF3.1, NRT1/ PTR family 3.1 -0.601 -0.309
91 261191_at AT1G32900 GBSS1, granule bound starch synthase 1 -0.598 -0.544
92 263431_at AT2G22170 PLAT2, PLAT domain protein 2 -0.593 0.049
93 245506_at AT4G15700 [Thioredoxin superfamily protein] -0.578 0.259
94 253372_at AT4G33220 ATPME44, A. THALIANA PECTIN METHYLESTERASE 44, PME44, pectin methylesterase 44 -0.559 0.030
95 252604_at AT3G45060 ATNRT2.6, ARABIDOPSIS THALIANA HIGH AFFINITY NITRATE TRANSPORTER 2.6, NRT2.6, high affinity nitrate transporter 2.6 -0.527 -0.065
96 250261_at AT5G13400 [Major facilitator superfamily protein] -0.525 -0.137
97 264360_at AT1G03310 AtBE2, ATISA2, ARABIDOPSIS THALIANA ISOAMYLASE 2, BE2, BRANCHING ENZYME 2, DBE1, debranching enzyme 1, ISA2 -0.524 -0.142
98 254232_at AT4G23600 CORI3, CORONATINE INDUCED 1, JR2, JASMONIC ACID RESPONSIVE 2 -0.519 0.229
99 255690_at AT4G00360 ATT1, ABERRANT INDUCTION OF TYPE THREE 1, CYP86A2, cytochrome P450, family 86, subfamily A, polypeptide 2 -0.514 -0.073
100 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein -0.489 0.033
101 253411_at AT4G32980 ATH1, homeobox gene 1 -0.485 -0.490
102 249955_at AT5G18840 [Major facilitator superfamily protein] -0.482 -0.007
103 245392_at AT4G15680 [Thioredoxin superfamily protein] -0.481 0.107
104 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 -0.476 0.149
105 251317_at AT3G61490 [Pectin lyase-like superfamily protein] -0.464 0.043
106 245504_at AT4G15660 [Thioredoxin superfamily protein] -0.440 0.252
107 267472_at AT2G02850 ARPN, plantacyanin -0.435 0.231
108 259579_at AT1G28010 ABCB14, ATP-binding cassette B14, ATABCB14, Arabidopsis thaliana ATP-binding cassette B14, MDR12, multi-drug resistance 12, PGP14, P-glycoprotein 14 -0.425 -0.065
109 253215_at AT4G34950 [Major facilitator superfamily protein] -0.420 0.256
110 254041_at AT4G25830 [Uncharacterised protein family (UPF0497)] -0.415 -0.101
111 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 -0.407 0.271
112 248186_at AT5G53880 unknown -0.400 -0.116
113 247563_at AT5G61130 AtPDCB1, PDCB1, plasmodesmata callose-binding protein 1 -0.398 -0.152
114 262563_at AT1G34210 ATSERK2, SERK2, somatic embryogenesis receptor-like kinase 2 -0.393 -0.181
115 257547_at AT3G13000 unknown -0.364 -0.354
116 250936_at AT5G03120 unknown -0.356 -0.086
117 266856_at AT2G26910 ABCG32, ATP-binding cassette G32, AtABCG32, ATPDR4, PLEIOTROPIC DRUG RESISTANCE 4, PDR4, pleiotropic drug resistance 4, PEC1, PERMEABLE CUTICLE 1 -0.354 -0.167
118 267592_at AT2G39710 [Eukaryotic aspartyl protease family protein] -0.351 0.135
119 253754_at AT4G29020 [glycine-rich protein] -0.348 -0.024
120 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 -0.346 -0.117
121 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 -0.342 -0.057
122 254122_at AT4G24510 CER2, ECERIFERUM 2, VC-2, VC2 -0.329 -0.032
123 253581_at AT4G30660 [Low temperature and salt responsive protein family] -0.317 0.139
124 259608_at AT1G27960 ECT9, evolutionarily conserved C-terminal region 9 -0.311 -0.102
125 258920_at AT3G10520 AHB2, haemoglobin 2, ARATH GLB2, ATGLB2, ARABIDOPSIS HEMOGLOBIN 2, GLB2, HEMOGLOBIN 2, HB2, haemoglobin 2, NSHB2, NON-SYMBIOTIC HAEMOGLOBIN 2 -0.310 -0.230
126 252863_at AT4G39800 ATIPS1, INOSITOL 3-PHOSPHATE SYNTHASE 1, ATMIPS1, MYO-INOSITOL-1-PHOSPHATE SYNTHASE 1, MI-1-P SYNTHASE, MIPS1, D-myo-Inositol 3-Phosphate Synthase 1, MIPS1, myo-inositol-1-phosphate synthase 1 -0.309 -0.150
127 257510_at AT1G55360 unknown -0.298 -0.040
128 255104_at AT4G08685 SAH7 -0.297 0.033
129 262736_at AT1G28570 [SGNH hydrolase-type esterase superfamily protein] -0.293 -0.082
130 263192_at AT1G36160 ACC1, acetyl-CoA carboxylase 1, AT-ACC1, EMB22, EMBRYO DEFECTIVE 22, GK, GURKE, GSD1, GLOSSYHEAD 1, PAS3, PASTICCINO 3, SFR3, SENSITIVE TO FREEZING 3 -0.289 -0.025
131 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.286 -0.115
132 258263_at AT3G15780 unknown -0.277 -0.095
133 262870_at AT1G64710 [GroES-like zinc-binding dehydrogenase family protein] -0.276 0.145
134 250610_at AT5G07550 ATGRP19, GRP19, glycine-rich protein 19 -0.276 0.010
135 256222_at AT1G56210 [Heavy metal transport/detoxification superfamily protein ] -0.274 0.013
136 253749_at AT4G29080 IAA27, indole-3-acetic acid inducible 27, PAP2, phytochrome-associated protein 2 -0.271 -0.064
137 245029_at AT2G26580 YAB5, YABBY5 -0.271 -0.226
138 264200_at AT1G22650 A/N-InvD, alkaline/neutral invertase D -0.271 -0.224
139 245505_at AT4G15690 [Thioredoxin superfamily protein] -0.266 0.176
140 263809_at AT2G04570 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.263 -0.123
141 256304_at AT1G69523 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.261 -0.660
142 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.261 0.588
143 253911_at AT4G27300 [S-locus lectin protein kinase family protein] -0.260 -0.054
144 252023_at AT3G52920 unknown -0.253 -0.098
145 256255_at AT3G11280 [Duplicated homeodomain-like superfamily protein] -0.253 -0.120
146 259528_at AT1G12330 unknown -0.251 -0.201
147 267414_at AT2G34790 EDA28, EMBRYO SAC DEVELOPMENT ARREST 28, MEE23, MATERNAL EFFECT EMBRYO ARREST 23 -0.250 0.383
148 245362_at AT4G17460 HAT1, JAB, JAIBA -0.247 -0.223
149 267006_at AT2G34190 [Xanthine/uracil permease family protein] -0.236 -0.124
150 254110_at AT4G25260 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.235 0.168
151 256192_at AT1G30110 ATNUDX25, nudix hydrolase homolog 25, NUDX25, nudix hydrolase homolog 25 -0.233 0.032
152 251195_at AT3G62930 [Thioredoxin superfamily protein] -0.232 -0.269
153 245637_at AT1G25230 [Calcineurin-like metallo-phosphoesterase superfamily protein] -0.229 0.043
154 259903_at AT1G74160 TRM4, TON1 Recruiting Motif 4 -0.228 -0.095
155 252033_at AT3G51950 [Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein] -0.226 -0.138
156 258270_at AT3G15650 [alpha/beta-Hydrolases superfamily protein] -0.226 0.271
157 245352_at AT4G15490 UGT84A3 -0.225 0.297